-
1Academic Journal
المؤلفون: Patrik Wikman, Viljami Salmela, Eetu Sjöblom, Miika Leminen, Matti Laine, Kimmo Alho
مصطلحات موضوعية: Biophysics, Medicine, Neuroscience, Physiology, Sociology, Infectious Diseases, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, ultimately aiding discrimination, predictable temporal profiles, performed representational dissimilarity, neural tracking fluctuated, limited spatial resolution, high temporal resolution, findings support models, analysed neural tracking, hierarchically organised nodes, separating relevant speech, irrelevant background speech, related iterative feedforward, speech using, relevant sounds, irrelevant ones, feedforward loops, different nodes, attended speech, related enhancement, significant role, respective techniques, plastic properties
-
2Academic Journal
المؤلفون: Singhania, Rajat, Tyson, John J.
مصطلحات موضوعية: perfect adaptation, molecular regulatory networks, evolutionary algorithm, evolutionary stability, incoherent feedforward loops
وصف الملف: application/pdf
Relation: Singhania, R.; Tyson, J.J. Evolutionary Stability of Small Molecular Regulatory Networks That Exhibit Near-Perfect Adaptation. Biology 2023, 12, 841.; http://hdl.handle.net/10919/115535; https://doi.org/10.3390/biology12060841
-
3Academic Journal
المصدر: Applied Sciences; Volume 12; Issue 16; Pages: 8292
مصطلحات موضوعية: feedforward loops, network motif, synthetic circuit, pulse generator
جغرافية الموضوع: agris
وصف الملف: application/pdf
Relation: Applied Biosciences and Bioengineering; https://dx.doi.org/10.3390/app12168292
الاتاحة: https://doi.org/10.3390/app12168292
-
4Dissertation/ Thesis
المؤلفون: Velásquez Rojas, Rafael Enrique
المساهمون: Pedraza Leal, Juan Manuel, Botero Mejía, Alonso, Facultad de Ciencias::Biofísica
مصطلحات موضوعية: Redes transcripcionales, Procesos estocásticos, Teoría de información, Biología de sistemas, Redes de retroalimentación directa, Transcriptional networks, Stochastic processes, Information theory, Systems biology, Feedforward loops networks, Física
وصف الملف: 83 páginas; application/pdf
Relation: [1] P. Vesely, “Molecular biology of the cell. by bruce alberts, alexander johnson, julian lewis, martin raff, keith roberts and peter walter. isbn 0-8153-3218-1; hardback; 1,616 pages; 110,00garlandscienceinc.,newyork,2002, 2004.; [2] U. Alon, An introduction to systems biology: design principles of biological circuits.CRC press, 2019.; [3] D. T. Suzuki, A. J. Griffiths, et al., An introduction to genetic analysis. WH Freeman and Com- pany., 1976.; [4] P. J. Russell and K. Gordey, IGenetics. No. QH430 R87, Benjamin Cummings San Francisco, 2002.; [5] R. Milo, S. Shen-Orr, S. Itzkovitz, N. Kashtan, D. Chklovskii, and U. Alon, “Network motifs: simple building blocks of complex networks,” Science, vol. 298, no. 5594, pp. 824–827, 2002.; [6] P.Erdos,“Onrandomgraphs,”Mathematicae,vol.6,pp.290–297,1959.; [7] M.Serban,“Exploringmodularityinbiologicalnetworks,”PhilosophicalTransactionsofthe Royal Society B, vol. 375, no. 1796, p. 20190316, 2020.; [8] S. Mangan and U. Alon, “Structure and function of the feed-forward loop network motif,” Proceedings of the National Academy of Sciences, vol. 100, no. 21, pp. 11980–11985, 2003.; [9] T.J.StevensandI.T.Arkin,“Domorecomplexorganismshaveagreaterproportionofmem- brane proteins in their genomes?,” Proteins: Structure, Function, and Bioinformatics, vol. 39, no. 4, pp. 417–420, 2000.; [10] A.Narayan,S.Gopi,D.Fushman,andA.N.Naganathan,“Abindingcooperativityswitchdriven by synergistic structural swelling of an osmo-regulatory protein pair,” Nature communications, vol. 10, no. 1, p. 1995, 2019.; [11] T.R.SorrellsandA.D.Johnson,“Makingsenseoftranscriptionnetworks,”Cell,vol.161,no.4, pp. 714–723, 2015.; [12] D.S.Latchman,“Transcriptionfactors:anoverview,”Theinternationaljournalofbiochemistry & cell biology, vol. 29, no. 12, pp. 1305–1312, 1997.; [13] B. Alberts, R. Heald, A. Johnson, D. Morgan, M. Raff, K. Roberts, and P. Walter, Molecular Biology of the Cell: Seventh International Student Edition with Registration Card. WW Norton & Company, 2022.; [14] J.Paulsson,“Summingupthenoiseingenenetworks,”Nature,vol.427,no.6973,pp.415–418, 2004.; [15] C. W. Gardiner et al., Handbook of stochastic methods, vol. 3. springer Berlin, 1985.; [16] D.Lavalette,M.A.Hink,M.Tourbez,C.Tétreau,andA.J.Visser,“Proteinsasmicroviscosimeters: Brownian motion revisited,” European Biophysics Journal, vol. 35, pp. 517–522, 2006.; [17] M.ThattaiandA.VanOudenaarden,“Intrinsicnoiseingeneregulatorynetworks,”Proceedings of the National Academy of Sciences, vol. 98, no. 15, pp. 8614–8619, 2001.; [18] P.S.Swain,M.B.Elowitz,andE.D.Siggia,“Intrinsicandextrinsiccontributionstostochasticity in gene expression,” Proceedings of the National Academy of Sciences, vol. 99, no. 20, pp. 12795– 12800, 2002.; [19] S.S.Shen-Orr,R.Milo,S.Mangan,andU.Alon,“Networkmotifsinthetranscriptionalregula- tion network of escherichia coli,” Nature genetics, vol. 31, no. 1, pp. 64–68, 2002.; [20] M.A.Rowland,A.Abdelzaher,P.Ghosh,andM.L.Mayo,“Crosstalkandthedynamicalmodula- rity of feed-forward loops in transcriptional regulatory networks,” Biophysical Journal, vol. 112, no. 8, pp. 1539–1550, 2017.; [21] D. S. Lemons and A. Gythiel, “Paul langevin’s 1908 paper “on the theory of brownian mo- tion”[“sur la théorie du mouvement brownien,” cr acad. sci.(paris) 146, 530–533 (1908)],” American Journal of Physics, vol. 65, no. 11, pp. 1079–1081, 1997.; [22] L.Ham,M.A.Coomer,andM.P.Stumpf,“Thechemicallangevinequationforbiochemical systems in dynamic environments,” The Journal of Chemical Physics, vol. 157, no. 9, p. 094105, 2022.; [23] M.P.Hui,P.L.Foley,andJ.G.Belasco,“Messengerrnadegradationinbacterialcells,”Annual review of genetics, vol. 48, pp. 537–559, 2014.; [24] S.Goutelle,M.Maurin,F.Rougier,X.Barbaut,L.Bourguignon,M.Ducher,andP.Maire,“The hill equation: a review of its capabilities in pharmacological modelling,” Fundamental & clinical pharmacology, vol. 22, no. 6, pp. 633–648, 2008.; [25] M. Santillán, “On the use of the hill functions in mathematical models of gene regulatory networks,” Mathematical Modelling of Natural Phenomena, vol. 3, no. 2, pp. 85–97, 2008.; [26] R.Silva-RochaandV.deLorenzo,“Mininglogicgatesinprokaryotictranscriptionalregulation networks,” FEBS letters, vol. 582, no. 8, pp. 1237–1244, 2008.; [27] R.Grima,“Linear-noiseapproximationandthechemicalmasterequationagreeuptosecond- order moments for a class of chemical systems,” Physical Review E, vol. 92, no. 4, p. 042124, 2015.; [28] P. C. Parks, “Am lyapunov’s stability theory—100 years on,” IMA journal of Mathematical Control and Information, vol. 9, no. 4, pp. 275–303, 1992.; [29] T. S. Roy, M. Nandi, A. Biswas, P. Chaudhury, and S. K. Banik, “Information transmission in a two-step cascade: interplay of activation and repression,” Theory in Biosciences, vol. 140, pp. 295–306, 2021.; [30] D. J. MacKay, Information theory, inference and learning algorithms. Cambridge university press, 2003.; [31] A. Lyon, “Why are normal distributions normal?,” The British Journal for the Philosophy of Science, 2014.; [32] F.A.Haight,“Handbookofthepoissondistribution,”(NoTitle),1967.; [33] A.PapoulisandS.UnnikrishnaPillai,Probability,randomvariablesandstochasticprocesses. 2002.; [34] A. Rényi, “On measures of entropy and information,” in Proceedings of the Fourth Berkeley Symposium on Mathematical Statistics and Probability, Volume 1: Contributions to the Theory of Statistics, vol. 4, pp. 547–562, University of California Press, 1961.; [35] S.KullbackandR.A.Leibler,“Oninformationandsufficiency,”Theannalsofmathematical statistics, vol. 22, no. 1, pp. 79–86, 1951.; [36] T.M.Cover,Elementsofinformationtheory.JohnWiley&Sons,1999.; [37] A. B. Barrett, “Exploration of synergistic and redundant information sharing in static and dynamical gaussian systems,” Physical Review E, vol. 91, no. 5, p. 052802, 2015.; [38] D.M.Bieretal.,“Theenergycostsofproteinmetabolism:leanandmeanonunclesam’steam,” The role of protein and amino acids in sustaining and enhancing performance, pp. 109–119, 1999.; [39] R.W.King,R.J.Deshaies,J.-M.Peters,andM.W.Kirschner,“Howproteolysisdrivesthecell cycle,” Science, vol. 274, no. 5293, pp. 1652–1659, 1996.; [40] H.A.Orr,“Fitnessanditsroleinevolutionarygenetics,”NatureReviewsGenetics,vol.10,no.8, pp. 531–539, 2009.; [41] D. T. Gillespie, “Exact stochastic simulation of coupled chemical reactions,” The journal of physical chemistry, vol. 81, no. 25, pp. 2340–2361, 1977.; [42] M. Nandi, A. Biswas, S. K. Banik, and P. Chaudhury, “Information processing in a simple one-step cascade,” Physical Review E, vol. 98, no. 4, p. 042310, 2018.; [43] M.S.A.Momin,A.Biswas,andS.K.Banik,“Coherentfeed-forwardloopactsasanefficient information transmitting motif,” Physical Review E, vol. 101, no. 2, p. 022407, 2020.; [44] M.S.A.MominandA.Biswas,“Extrinsicnoiseofthetargetgenegovernsabundancepattern of feed-forward loop motifs,” Physical Review E, vol. 101, no. 5, p. 052411, 2020.; [45] W. R. Inc., “Mathematica, Version 13.3.” Champaign, IL, 2023.; [46] S.J.BryantandB.B.Machta,“Physicalconstraintsinintracellularsignaling:thecostofsending a bit,” Physical Review Letters, vol. 131, no. 6, p. 068401, 2023.; [47] S. Iyer Biswas, Applications of methods of non-equilibrium statistical physics to models of stochastic gene expression. PhD thesis, The Ohio State University, 2009.; [48] J. Grandell, Mixed poisson processes, vol. 77. CRC Press, 1997.; https://hdl.handle.net/1992/73900; instname:Universidad de los Andes; reponame:Repositorio Institucional Séneca; repourl:https://repositorio.uniandes.edu.co/
الاتاحة: https://hdl.handle.net/1992/73900
-
5
المؤلفون: Patrik Wikman, Viljami Salmela, Eetu Sjöblom, Miika Leminen, Matti Laine, Kimmo Alho
مصطلحات موضوعية: Biophysics, Medicine, Neuroscience, Physiology, Sociology, Infectious Diseases, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, ultimately aiding discrimination, predictable temporal profiles, performed representational dissimilarity, neural tracking fluctuated, limited spatial resolution, high temporal resolution, findings support models, analysed neural tracking, hierarchically organised nodes, separating relevant speech, irrelevant background speech, related iterative feedforward, speech using, relevant sounds, irrelevant ones, feedforward loops, different nodes, attended speech, related enhancement, significant role, respective techniques, plastic properties
-
6
المؤلفون: Patrik Wikman, Viljami Salmela, Eetu Sjöblom, Miika Leminen, Matti Laine, Kimmo Alho
مصطلحات موضوعية: Biophysics, Medicine, Neuroscience, Physiology, Sociology, Infectious Diseases, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, ultimately aiding discrimination, predictable temporal profiles, performed representational dissimilarity, neural tracking fluctuated, limited spatial resolution, high temporal resolution, findings support models, analysed neural tracking, hierarchically organised nodes, separating relevant speech, irrelevant background speech, related iterative feedforward, speech using, relevant sounds, irrelevant ones, feedforward loops, different nodes, attended speech, related enhancement, significant role, respective techniques, plastic properties
-
7
المؤلفون: Patrik Wikman, Viljami Salmela, Eetu Sjöblom, Miika Leminen, Matti Laine, Kimmo Alho
مصطلحات موضوعية: Biophysics, Medicine, Neuroscience, Physiology, Sociology, Infectious Diseases, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, ultimately aiding discrimination, predictable temporal profiles, performed representational dissimilarity, neural tracking fluctuated, limited spatial resolution, high temporal resolution, findings support models, analysed neural tracking, hierarchically organised nodes, separating relevant speech, irrelevant background speech, related iterative feedforward, speech using, relevant sounds, irrelevant ones, feedforward loops, different nodes, attended speech, related enhancement, significant role, respective techniques, plastic properties
-
8Image
المؤلفون: Patrik Wikman, Viljami Salmela, Eetu Sjöblom, Miika Leminen, Matti Laine, Kimmo Alho
مصطلحات موضوعية: Biophysics, Medicine, Neuroscience, Physiology, Sociology, Infectious Diseases, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, ultimately aiding discrimination, predictable temporal profiles, performed representational dissimilarity, neural tracking fluctuated, limited spatial resolution, high temporal resolution, findings support models, analysed neural tracking, hierarchically organised nodes, separating relevant speech, irrelevant background speech, related iterative feedforward, speech using, relevant sounds, irrelevant ones, feedforward loops, different nodes, attended speech, related enhancement, significant role, respective techniques, plastic properties
-
9Image
المؤلفون: Patrik Wikman, Viljami Salmela, Eetu Sjöblom, Miika Leminen, Matti Laine, Kimmo Alho
مصطلحات موضوعية: Biophysics, Medicine, Neuroscience, Physiology, Sociology, Infectious Diseases, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, ultimately aiding discrimination, predictable temporal profiles, performed representational dissimilarity, neural tracking fluctuated, limited spatial resolution, high temporal resolution, findings support models, analysed neural tracking, hierarchically organised nodes, separating relevant speech, irrelevant background speech, related iterative feedforward, speech using, relevant sounds, irrelevant ones, feedforward loops, different nodes, attended speech, related enhancement, significant role, respective techniques, plastic properties
-
10Image
المؤلفون: Patrik Wikman, Viljami Salmela, Eetu Sjöblom, Miika Leminen, Matti Laine, Kimmo Alho
مصطلحات موضوعية: Biophysics, Medicine, Neuroscience, Physiology, Sociology, Infectious Diseases, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, ultimately aiding discrimination, predictable temporal profiles, performed representational dissimilarity, neural tracking fluctuated, limited spatial resolution, high temporal resolution, findings support models, analysed neural tracking, hierarchically organised nodes, separating relevant speech, irrelevant background speech, related iterative feedforward, speech using, relevant sounds, irrelevant ones, feedforward loops, different nodes, attended speech, related enhancement, significant role, respective techniques, plastic properties
-
11
المؤلفون: Patrik Wikman, Viljami Salmela, Eetu Sjöblom, Miika Leminen, Matti Laine, Kimmo Alho
مصطلحات موضوعية: Biophysics, Medicine, Neuroscience, Physiology, Sociology, Infectious Diseases, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, ultimately aiding discrimination, predictable temporal profiles, performed representational dissimilarity, neural tracking fluctuated, limited spatial resolution, high temporal resolution, findings support models, analysed neural tracking, hierarchically organised nodes, separating relevant speech, irrelevant background speech, related iterative feedforward, speech using, relevant sounds, irrelevant ones, feedforward loops, different nodes, attended speech, related enhancement, significant role, respective techniques, plastic properties
-
12Image
المؤلفون: Patrik Wikman, Viljami Salmela, Eetu Sjöblom, Miika Leminen, Matti Laine, Kimmo Alho
مصطلحات موضوعية: Biophysics, Medicine, Neuroscience, Physiology, Sociology, Infectious Diseases, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, ultimately aiding discrimination, predictable temporal profiles, performed representational dissimilarity, neural tracking fluctuated, limited spatial resolution, high temporal resolution, findings support models, analysed neural tracking, hierarchically organised nodes, separating relevant speech, irrelevant background speech, related iterative feedforward, speech using, relevant sounds, irrelevant ones, feedforward loops, different nodes, attended speech, related enhancement, significant role, respective techniques, plastic properties
-
13Image
المؤلفون: Patrik Wikman, Viljami Salmela, Eetu Sjöblom, Miika Leminen, Matti Laine, Kimmo Alho
مصطلحات موضوعية: Biophysics, Medicine, Neuroscience, Physiology, Sociology, Infectious Diseases, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, ultimately aiding discrimination, predictable temporal profiles, performed representational dissimilarity, neural tracking fluctuated, limited spatial resolution, high temporal resolution, findings support models, analysed neural tracking, hierarchically organised nodes, separating relevant speech, irrelevant background speech, related iterative feedforward, speech using, relevant sounds, irrelevant ones, feedforward loops, different nodes, attended speech, related enhancement, significant role, respective techniques, plastic properties
-
14Image
المؤلفون: Patrik Wikman, Viljami Salmela, Eetu Sjöblom, Miika Leminen, Matti Laine, Kimmo Alho
مصطلحات موضوعية: Biophysics, Medicine, Neuroscience, Physiology, Sociology, Infectious Diseases, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, ultimately aiding discrimination, predictable temporal profiles, performed representational dissimilarity, neural tracking fluctuated, limited spatial resolution, high temporal resolution, findings support models, analysed neural tracking, hierarchically organised nodes, separating relevant speech, irrelevant background speech, related iterative feedforward, speech using, relevant sounds, irrelevant ones, feedforward loops, different nodes, attended speech, related enhancement, significant role, respective techniques, plastic properties
-
15Image
المؤلفون: Patrik Wikman, Viljami Salmela, Eetu Sjöblom, Miika Leminen, Matti Laine, Kimmo Alho
مصطلحات موضوعية: Biophysics, Medicine, Neuroscience, Physiology, Sociology, Infectious Diseases, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, ultimately aiding discrimination, predictable temporal profiles, performed representational dissimilarity, neural tracking fluctuated, limited spatial resolution, high temporal resolution, findings support models, analysed neural tracking, hierarchically organised nodes, separating relevant speech, irrelevant background speech, related iterative feedforward, speech using, relevant sounds, irrelevant ones, feedforward loops, different nodes, attended speech, related enhancement, significant role, respective techniques, plastic properties
-
16Image
المؤلفون: Patrik Wikman, Viljami Salmela, Eetu Sjöblom, Miika Leminen, Matti Laine, Kimmo Alho
مصطلحات موضوعية: Biophysics, Medicine, Neuroscience, Physiology, Sociology, Infectious Diseases, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, ultimately aiding discrimination, predictable temporal profiles, performed representational dissimilarity, neural tracking fluctuated, limited spatial resolution, high temporal resolution, findings support models, analysed neural tracking, hierarchically organised nodes, separating relevant speech, irrelevant background speech, related iterative feedforward, speech using, relevant sounds, irrelevant ones, feedforward loops, different nodes, attended speech, related enhancement, significant role, respective techniques, plastic properties
-
17
المؤلفون: Patrik Wikman, Viljami Salmela, Eetu Sjöblom, Miika Leminen, Matti Laine, Kimmo Alho
مصطلحات موضوعية: Biophysics, Medicine, Neuroscience, Physiology, Sociology, Infectious Diseases, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, ultimately aiding discrimination, predictable temporal profiles, performed representational dissimilarity, neural tracking fluctuated, limited spatial resolution, high temporal resolution, findings support models, analysed neural tracking, hierarchically organised nodes, separating relevant speech, irrelevant background speech, related iterative feedforward, speech using, relevant sounds, irrelevant ones, feedforward loops, different nodes, attended speech, related enhancement, significant role, respective techniques, plastic properties
-
18
المؤلفون: Patrik Wikman, Viljami Salmela, Eetu Sjöblom, Miika Leminen, Matti Laine, Kimmo Alho
مصطلحات موضوعية: Biophysics, Medicine, Neuroscience, Physiology, Sociology, Infectious Diseases, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, ultimately aiding discrimination, predictable temporal profiles, performed representational dissimilarity, neural tracking fluctuated, limited spatial resolution, high temporal resolution, findings support models, analysed neural tracking, hierarchically organised nodes, separating relevant speech, irrelevant background speech, related iterative feedforward, speech using, relevant sounds, irrelevant ones, feedforward loops, different nodes, attended speech, related enhancement, significant role, respective techniques, plastic properties
-
19Conference
المؤلفون: Borri, A, Palumbo, P, Singh, A
المساهمون: Borri, A, Palumbo, P, Singh, A
مصطلحات موضوعية: Metabolic pathway, Enzymatic Reaction, Systems Biology, Feedback/Feedforward loops, ING-INF/04 - AUTOMATICA
Relation: info:eu-repo/semantics/altIdentifier/isbn/978-153861395-5; info:eu-repo/semantics/altIdentifier/wos/WOS:000458114802084; ispartofbook:57th IEEE Conference on Decision and Control, CDC 2018; IEEE Conference on Decision and Control (CDC); firstpage:2679; lastpage:2684; numberofpages:6; serie:PROCEEDINGS OF THE IEEE CONFERENCE ON DECISION & CONTROL; http://hdl.handle.net/10281/246891; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85062169780
-
20
المؤلفون: Stratmann, Johannes, Ekman, Helen, 1976, Thor, Stefan
المصدر: Development. 146(6)
مصطلحات موضوعية: Cell fate specification, Terminal selector, Axon pathfinding, Genetic cascades, Feedforward loops
وصف الملف: electronic