المؤلفون: Alisa Mikhaylina, Natalia Lekontseva, Victor Marchenkov, Viktoria Kolesnikova, Albina Khairetdinova, Oleg Nikonov, Vitalii Balobanov

المصدر: Molecules; Volume 28; Issue 17; Pages: 6196

مصطلحات موضوعية: protein engineering, domain rearrangement, chaperone, hybrid protein

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Chemical Biology; https://dx.doi.org/10.3390/molecules28176196

الاتاحة: https://doi.org/10.3390/molecules28176196

المؤلفون: Qin Huang, Jing Yang, Changcheng Li, Yingjie Song, Yibo Zhu, Ninglin Zhao, Xingyu Mou, Xinyue Tang, Guihua Luo, Aiping Tong, Bo Sun, Hong Tang, Hong Li, Lang Bai, Rui Bao

المصدر: Computational and Structural Biotechnology Journal, Vol 19, Iss , Pp 2460-2467 (2021)

مصطلحات موضوعية: FKBP-type protein, Chaperone activity, Crystal structure, Inter-domain rearrangement, Pseudomonas aeruginosa, Biotechnology, TP248.13-248.65

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2001037021001574; https://doaj.org/toc/2001-0370

URL الوصول: https://doaj.org/article/d2a5d21d24264e789859989cd3bf84c7

المؤلفون: Danial Pourjafar-Dehkordi (7165523), Martin Zacharias (9025)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Immunology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, thermus thermophilus <, many regulatory processes, hamiltonian replica exchange, complex formation results, 16 base pairs, specific biasing potential, much broader distribution, regular md simulations, opening upon guide, div >< p, accelerate domain motions, target mrna molecules, argonaute domain motion, ternary complexes compared, domain motions, domain distribution, target mrna, specific cleavage, paz domain, domain rearrangement

Relation: https://figshare.com/articles/journal_contribution/Root_Mean_Square_Deviation_RMSD_and_conformations_during_cMD_simulations_of_apo_Argonoute_and_binary_and_ternary_complexes_/17095613

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009625.s001

المؤلفون: Danial Pourjafar-Dehkordi (7165523), Martin Zacharias (9025)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Immunology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, thermus thermophilus <, many regulatory processes, hamiltonian replica exchange, complex formation results, 16 base pairs, specific biasing potential, much broader distribution, regular md simulations, opening upon guide, div >< p, accelerate domain motions, target mrna molecules, argonaute domain motion, ternary complexes compared, domain motions, domain distribution, target mrna, specific cleavage, paz domain, domain rearrangement

Relation: https://figshare.com/articles/journal_contribution/Definition_of_the_CV_for_the_H-REMD_simulations_/17095616

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009625.s002

المؤلفون: Danial Pourjafar-Dehkordi (7165523), Martin Zacharias (9025)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Immunology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, thermus thermophilus <, many regulatory processes, hamiltonian replica exchange, complex formation results, 16 base pairs, specific biasing potential, much broader distribution, regular md simulations, opening upon guide, div >< p, accelerate domain motions, target mrna molecules, argonaute domain motion, ternary complexes compared, domain motions, domain distribution, target mrna, specific cleavage, paz domain, domain rearrangement

Relation: https://figshare.com/articles/journal_contribution/Convergence_of_the_H-REMD_simulations_/17095619

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009625.s003

المؤلفون: Danial Pourjafar-Dehkordi (7165523), Martin Zacharias (9025)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Immunology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, thermus thermophilus <, many regulatory processes, hamiltonian replica exchange, complex formation results, 16 base pairs, specific biasing potential, much broader distribution, regular md simulations, opening upon guide, div >< p, accelerate domain motions, target mrna molecules, argonaute domain motion, ternary complexes compared, domain motions, domain distribution, target mrna, specific cleavage, paz domain, domain rearrangement

Relation: https://figshare.com/articles/journal_contribution/Conformational_fluctuations_RMSF_/17095625

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009625.s005

المؤلفون: Danial Pourjafar-Dehkordi (7165523), Martin Zacharias (9025)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Immunology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, thermus thermophilus <, many regulatory processes, hamiltonian replica exchange, complex formation results, 16 base pairs, specific biasing potential, much broader distribution, regular md simulations, opening upon guide, div >< p, accelerate domain motions, target mrna molecules, argonaute domain motion, ternary complexes compared, domain motions, domain distribution, target mrna, specific cleavage, paz domain, domain rearrangement

Relation: https://figshare.com/articles/journal_contribution/RMSD_vs_simulation_time_for_H-REMD_simulations_/17095628

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009625.s006

المؤلفون: Danial Pourjafar-Dehkordi (7165523), Martin Zacharias (9025)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Immunology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, thermus thermophilus <, many regulatory processes, hamiltonian replica exchange, complex formation results, 16 base pairs, specific biasing potential, much broader distribution, regular md simulations, opening upon guide, div >< p, accelerate domain motions, target mrna molecules, argonaute domain motion, ternary complexes compared, domain motions, domain distribution, target mrna, specific cleavage, paz domain, domain rearrangement

Relation: https://figshare.com/articles/journal_contribution/Cluster_populations_and_cluster_representatives_/17095631

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009625.s007

المؤلفون: Danial Pourjafar-Dehkordi (7165523), Martin Zacharias (9025)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Immunology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, thermus thermophilus <, many regulatory processes, hamiltonian replica exchange, complex formation results, 16 base pairs, specific biasing potential, much broader distribution, regular md simulations, opening upon guide, div >< p, accelerate domain motions, target mrna molecules, argonaute domain motion, ternary complexes compared, domain motions, domain distribution, target mrna, specific cleavage, paz domain, domain rearrangement

Relation: https://figshare.com/articles/journal_contribution/Cluster_populations_and_cluster_representatives_for_ternary_complexes_with_15_and_16_bp_guide-targed_duplexes_/17095634

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009625.s008

المؤلفون: Trasvinã-Arenas, Carlos H., Lopez-Castillo, Laura M., Sanchez Sandoval, Maria Eugenia, 1985, Brieba, Luis G.

المساهمون: Göteborgs universitet, Sahlgrenska akademin, Core Facilities, Bioinformatics, Gothenburg University, Sahlgrenska Academy, Core Facilities, Bioinformatics

المصدر: FEBS Journal. 283:521-540

مصطلحات موضوعية: Medicinsk bioteknologi, Medical Biotechnology, adenine glycosylase, DNA repair, domain rearrangement, [4Fe-4S] cluster

URL الوصول: https://gup.ub.gu.se/publication/333594

المؤلفون: Qin, Huang, Jing, Yang, Changcheng, Li, Yingjie, Song, Yibo, Zhu, Ninglin, Zhao, Xingyu, Mou, Xinyue, Tang, Guihua, Luo, Aiping, Tong, Bo, Sun, Hong, Tang, Hong, Li, Lang, Bai, Rui, Bao

المصدر: Computational and Structural Biotechnology Journal

مصطلحات موضوعية: Inter-domain rearrangement, Chaperone activity, Crystal structure, Pseudomonas aeruginosa, FKBP-type protein, ComputingMethodologies_COMPUTERGRAPHICS, Research Article

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::3ee67802f533075970fd21917e7762ad
https://pubmed.ncbi.nlm.nih.gov/34025936

المؤلفون: Danial Pourjafar-Dehkordi (7165523), Martin Zacharias (9025)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Immunology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, thermus thermophilus <, many regulatory processes, hamiltonian replica exchange, complex formation results, 16 base pairs, specific biasing potential, much broader distribution, regular md simulations, opening upon guide, div >< p, accelerate domain motions, target mrna molecules, argonaute domain motion, ternary complexes compared, domain motions, domain distribution, target mrna, specific cleavage, paz domain, domain rearrangement

Relation: https://figshare.com/articles/figure/Adaptive_H-REMD_simulation_algorithm_/17095637

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009625.g001

المؤلفون: Danial Pourjafar-Dehkordi (7165523), Martin Zacharias (9025)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Immunology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, thermus thermophilus <, many regulatory processes, hamiltonian replica exchange, complex formation results, 16 base pairs, specific biasing potential, much broader distribution, regular md simulations, opening upon guide, div >< p, accelerate domain motions, target mrna molecules, argonaute domain motion, ternary complexes compared, domain motions, domain distribution, target mrna, specific cleavage, paz domain, domain rearrangement

Relation: https://figshare.com/articles/figure/H-REMD_simulations_on_ternary_complexes_with_14_15_or_16_bp_between_guide_and_target_DNA_strands_/17095649

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009625.g005

المؤلفون: Danial Pourjafar-Dehkordi (7165523), Martin Zacharias (9025)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Immunology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, thermus thermophilus <, many regulatory processes, hamiltonian replica exchange, complex formation results, 16 base pairs, specific biasing potential, much broader distribution, regular md simulations, opening upon guide, div >< p, accelerate domain motions, target mrna molecules, argonaute domain motion, ternary complexes compared, domain motions, domain distribution, target mrna, specific cleavage, paz domain, domain rearrangement

Relation: https://figshare.com/articles/figure/Domain_mobility_during_H-REMD_with_domain-domain_center-of-mass_a_biasing_potentials_/17095643

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009625.g003

المؤلفون: Danial Pourjafar-Dehkordi (7165523), Martin Zacharias (9025)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Immunology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, thermus thermophilus <, many regulatory processes, hamiltonian replica exchange, complex formation results, 16 base pairs, specific biasing potential, much broader distribution, regular md simulations, opening upon guide, div >< p, accelerate domain motions, target mrna molecules, argonaute domain motion, ternary complexes compared, domain motions, domain distribution, target mrna, specific cleavage, paz domain, domain rearrangement

Relation: https://figshare.com/articles/figure/Guide_3_-end_released_observed_in_H-REMD_of_ternary_TtAgo_with_bound_15_and_16_bp_target-guide_duplexes_/17095652

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009625.g006

المؤلفون: Danial Pourjafar-Dehkordi (7165523), Martin Zacharias (9025)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Immunology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, thermus thermophilus <, many regulatory processes, hamiltonian replica exchange, complex formation results, 16 base pairs, specific biasing potential, much broader distribution, regular md simulations, opening upon guide, div >< p, accelerate domain motions, target mrna molecules, argonaute domain motion, ternary complexes compared, domain motions, domain distribution, target mrna, specific cleavage, paz domain, domain rearrangement

Relation: https://figshare.com/articles/figure/DNA_cluster_representatives_obtained_from_the_simulation_trajectories_/17095646

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009625.g004

المؤلفون: Raimundo, João Alexandre Pereira, Sobral, Rómulo Sacramento, Laranjeira, Sara, Costa, Maria Manuela Ribeiro

مصطلحات موضوعية: MYB, RADIALIS, DIVARICATA, DRIF, Protein evolution, Protein-protein interaction, Domain earrangement, Molecular antagonism, Small interfering peptide, Flower asymmetry, Antirrhinum majus, Domain rearrangement, Engenharia e Tecnologia::Biotecnologia Industrial, Science & Technology

وصف الملف: application/pdf

Relation: https://academic.oup.com/mbe/article/35/12/2873/5092475?login=true; Raimundo, J., Sobral, R., Laranjeira, S., & Costa, M. M. R. (2018). Successive domain rearrangements underlie the evolution of a regulatory module controlled by a small interfering peptide. Molecular biology and evolution, 35(12), 2873-2885; http://hdl.handle.net/1822/72765

الاتاحة: http://hdl.handle.net/1822/72765
https://doi.org/10.1093/molbev/msy178

المؤلفون: Rómulo Sacramento Sobral, João Raimundo, Maria Manuela Ribeiro Costa, Sara Laranjeira

المساهمون: Universidade do Minho

المصدر: Molecular Biology and Evolution
Repositório Científico de Acesso Aberto de Portugal
Repositório Científico de Acesso Aberto de Portugal (RCAAP)
instacron:RCAAP

مصطلحات موضوعية: 0301 basic medicine, Domain earrangement, Lineage (genetic), Protein family, Engenharia e Tecnologia::Biotecnologia Industrial, Protein domain, DRIF, MYB, Biology, Flower asymmetry, Protein–protein interaction, Evolution, Molecular, 03 medical and health sciences, Protein-protein interaction, Protein Domains, Gene Expression Regulation, Plant, Biotecnologia Industrial [Engenharia e Tecnologia], Molecular antagonism, Domain rearrangement, Genetics, DIVARICATA, Small interfering peptide, Molecular Biology, Phylogeny, Discoveries, Ecology, Evolution, Behavior and Systematics, Plant Proteins, Regulation of gene expression, RADIALIS, Science & Technology, Plants, Phenotype, Cell biology, Antirrhinum majus, protein–protein interaction, 030104 developmental biology, Transcription preinitiation complex, Protein evolution

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::548de7042a8a0c4c4725dd89a833a0b4
https://hdl.handle.net/1822/72765

المؤلفون: Simon Gladman, Steven M. Cleal, Eric C. Reynolds, Christine A. Seers, Stuart G. Dashper, Dieter M. Bulach, P. Scott Chandry, Keith J. Cross, Torsten Seemann, Helen L. Mitchell

المصدر: Frontiers in Microbiology

مصطلحات موضوعية: 0301 basic medicine, Whole genome sequencing, Genetics, Microbiology (medical), Phylogenetic tree, biology, 030106 microbiology, Virulence, genetic diversity, biology.organism_classification, Microbiology, Virulence factor, specific domain rearrangement, Bacterial adhesin, 03 medical and health sciences, periodontal pathogen, Phylogenetics, Horizontal gene transfer, surface virulence factors, Porphyromonas gingivalis, Original Research

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b26e23e4b7e5f2a90be87251f2f16f5c

المؤلفون: Olechnovič, Kliment, Kulberkytė, Eleonora, Venclovas, Česlovas

المصدر: Proteins: structure, function, and bioinformatics, Hoboken : John Wiley & Sons, Inc, 2013, vol. 81, no 1, p. 149-162 ; ISSN 0887-3585

مصطلحات موضوعية: Protein structure, Model accuracy, Residue-residue contacts, Physical realism, Domain rearrangement, Multi-subunit structures, CASP, GDT

Relation: http://vu.lvb.lt/VU:ELABAPDB6160183&prefLang=en_US

الاتاحة: http://vu.lvb.lt/VU:ELABAPDB6160183&prefLang=en_US