المؤلفون: Chloé Dequeker (4966165), Yasser Mohseni Behbahani (12015675), Laurent David (157724), Elodie Laine (140035), Alessandra Carbone (124226)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, work may contribute, specific functional classes, several key ingredients, high discriminative power, ab initio <, protein structural models, characterising protein interactions, significant improvement compared, docking algorithm uses, div >< p, protein structures, protein partners, unexpected partners, unbound conformations, systematically investigated, sometimes contradictory, scoring function, rigid bodies, previous works, past years, molecular cross, large body, large amounts, interface matching, improving medicine

Relation: https://figshare.com/articles/figure/Number_of_putative_partners_predicted_by_CCD2PI_/19089600

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009825.s001

المؤلفون: Chloé Dequeker (4966165), Yasser Mohseni Behbahani (12015675), Laurent David (157724), Elodie Laine (140035), Alessandra Carbone (124226)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, work may contribute, specific functional classes, several key ingredients, high discriminative power, ab initio <, protein structural models, characterising protein interactions, significant improvement compared, docking algorithm uses, div >< p, protein structures, protein partners, unexpected partners, unbound conformations, systematically investigated, sometimes contradictory, scoring function, rigid bodies, previous works, past years, molecular cross, large body, large amounts, interface matching, improving medicine

Relation: https://figshare.com/articles/figure/Comparison_of_cognate_partners_and_competitors_interfaces_/19089606

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009825.s003

المؤلفون: Chloé Dequeker (4966165), Yasser Mohseni Behbahani (12015675), Laurent David (157724), Elodie Laine (140035), Alessandra Carbone (124226)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, work may contribute, specific functional classes, several key ingredients, high discriminative power, ab initio <, protein structural models, characterising protein interactions, significant improvement compared, docking algorithm uses, div >< p, protein structures, protein partners, unexpected partners, unbound conformations, systematically investigated, sometimes contradictory, scoring function, rigid bodies, previous works, past years, molecular cross, large body, large amounts, interface matching, improving medicine

Relation: https://figshare.com/articles/figure/Predicted_interaction_matrices_for_the_PPDBv2_/19089603

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009825.s002

المؤلفون: Chloé Dequeker (4966165), Yasser Mohseni Behbahani (12015675), Laurent David (157724), Elodie Laine (140035), Alessandra Carbone (124226)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, work may contribute, specific functional classes, several key ingredients, high discriminative power, ab initio <, protein structural models, characterising protein interactions, significant improvement compared, docking algorithm uses, div >< p, protein structures, protein partners, unexpected partners, unbound conformations, systematically investigated, sometimes contradictory, scoring function, rigid bodies, previous works, past years, molecular cross, large body, large amounts, interface matching, improving medicine

Relation: https://figshare.com/articles/figure/Properties_of_the_known_interacting_pairs_/19089609

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009825.s004

المؤلفون: Chloé Dequeker (4966165), Yasser Mohseni Behbahani (12015675), Laurent David (157724), Elodie Laine (140035), Alessandra Carbone (124226)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, work may contribute, specific functional classes, several key ingredients, high discriminative power, ab initio <, protein structural models, characterising protein interactions, significant improvement compared, docking algorithm uses, div >< p, protein structures, protein partners, unexpected partners, unbound conformations, systematically investigated, sometimes contradictory, scoring function, rigid bodies, previous works, past years, molecular cross, large body, large amounts, interface matching, improving medicine

Relation: https://figshare.com/articles/figure/Influence_of_the_quality_of_the_interface_predictions_on_partner_identification_/19089621

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009825.s008

المؤلفون: Chloé Dequeker (4966165), Yasser Mohseni Behbahani (12015675), Laurent David (157724), Elodie Laine (140035), Alessandra Carbone (124226)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, work may contribute, specific functional classes, several key ingredients, high discriminative power, ab initio <, protein structural models, characterising protein interactions, significant improvement compared, docking algorithm uses, div >< p, protein structures, protein partners, unexpected partners, unbound conformations, systematically investigated, sometimes contradictory, scoring function, rigid bodies, previous works, past years, molecular cross, large body, large amounts, interface matching, improving medicine

Relation: https://figshare.com/articles/figure/Scoring_schemes_used_to_predict_interfaces_/19089615

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009825.s006

المؤلفون: Chloé Dequeker (4966165), Yasser Mohseni Behbahani (12015675), Laurent David (157724), Elodie Laine (140035), Alessandra Carbone (124226)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, work may contribute, specific functional classes, several key ingredients, high discriminative power, ab initio <, protein structural models, characterising protein interactions, significant improvement compared, docking algorithm uses, div >< p, protein structures, protein partners, unexpected partners, unbound conformations, systematically investigated, sometimes contradictory, scoring function, rigid bodies, previous works, past years, molecular cross, large body, large amounts, interface matching, improving medicine

Relation: https://figshare.com/articles/figure/Examples_of_annotated_and_homology-transferred_interactions_/19089612

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009825.s005

المؤلفون: Chloé Dequeker (4966165), Yasser Mohseni Behbahani (12015675), Laurent David (157724), Elodie Laine (140035), Alessandra Carbone (124226)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, work may contribute, specific functional classes, several key ingredients, high discriminative power, ab initio <, protein structural models, characterising protein interactions, significant improvement compared, docking algorithm uses, div >< p, protein structures, protein partners, unexpected partners, unbound conformations, systematically investigated, sometimes contradictory, scoring function, rigid bodies, previous works, past years, molecular cross, large body, large amounts, interface matching, improving medicine

Relation: https://figshare.com/articles/figure/Detailed_predictive_performance_for_PPDBv2_when_using_the_knowledge_of_the_experimental_interfaces_/19089618

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009825.s007

المؤلفون: Chloé Dequeker (4966165), Yasser Mohseni Behbahani (12015675), Laurent David (157724), Elodie Laine (140035), Alessandra Carbone (124226)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, work may contribute, specific functional classes, several key ingredients, high discriminative power, ab initio <, protein structural models, characterising protein interactions, significant improvement compared, docking algorithm uses, div >< p, protein structures, protein partners, unexpected partners, unbound conformations, systematically investigated, sometimes contradictory, scoring function, rigid bodies, previous works, past years, molecular cross, large body, large amounts, interface matching, improving medicine

Relation: https://figshare.com/articles/figure/Partner_identification_for_proteins_where_the_predicted_and_experimental_interfaces_do_not_match_F1-score_0_2_/19089624

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009825.s009

المؤلفون: Chloé Dequeker (4966165), Yasser Mohseni Behbahani (12015675), Laurent David (157724), Elodie Laine (140035), Alessandra Carbone (124226)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, work may contribute, specific functional classes, several key ingredients, high discriminative power, ab initio <, protein structural models, characterising protein interactions, significant improvement compared, docking algorithm uses, div >< p, protein structures, protein partners, unexpected partners, unbound conformations, systematically investigated, sometimes contradictory, scoring function, rigid bodies, previous works, past years, molecular cross, large body, large amounts, interface matching, improving medicine

Relation: https://figshare.com/articles/figure/Predictive_performance_on_the_PPDBv2_/19089636

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009825.g002

المؤلفون: Chloé Dequeker (4966165), Yasser Mohseni Behbahani (12015675), Laurent David (157724), Elodie Laine (140035), Alessandra Carbone (124226)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, work may contribute, specific functional classes, several key ingredients, high discriminative power, ab initio <, protein structural models, characterising protein interactions, significant improvement compared, docking algorithm uses, div >< p, protein structures, protein partners, unexpected partners, unbound conformations, systematically investigated, sometimes contradictory, scoring function, rigid bodies, previous works, past years, molecular cross, large body, large amounts, interface matching, improving medicine

Relation: https://figshare.com/articles/figure/Assessment_of_CCD2PI_on_an_independent_dataset_/19089627

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009825.s010

المؤلفون: Chloé Dequeker (4966165), Yasser Mohseni Behbahani (12015675), Laurent David (157724), Elodie Laine (140035), Alessandra Carbone (124226)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, work may contribute, specific functional classes, several key ingredients, high discriminative power, ab initio <, protein structural models, characterising protein interactions, significant improvement compared, docking algorithm uses, div >< p, protein structures, protein partners, unexpected partners, unbound conformations, systematically investigated, sometimes contradictory, scoring function, rigid bodies, previous works, past years, molecular cross, large body, large amounts, interface matching, improving medicine

Relation: https://figshare.com/articles/figure/Influence_of_the_parameters_for_PPDBv2_when_considering_predicted_RIs_/19089639

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009825.g003

المؤلفون: Chloé Dequeker (4966165), Yasser Mohseni Behbahani (12015675), Laurent David (157724), Elodie Laine (140035), Alessandra Carbone (124226)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, work may contribute, specific functional classes, several key ingredients, high discriminative power, ab initio <, protein structural models, characterising protein interactions, significant improvement compared, docking algorithm uses, div >< p, protein structures, protein partners, unexpected partners, unbound conformations, systematically investigated, sometimes contradictory, scoring function, rigid bodies, previous works, past years, molecular cross, large body, large amounts, interface matching, improving medicine

Relation: https://figshare.com/articles/figure/Principle_of_the_method_/19089633

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009825.g001

المؤلفون: Chloé Dequeker (4966165), Yasser Mohseni Behbahani (12015675), Laurent David (157724), Elodie Laine (140035), Alessandra Carbone (124226)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, work may contribute, specific functional classes, several key ingredients, high discriminative power, ab initio <, protein structural models, characterising protein interactions, significant improvement compared, docking algorithm uses, div >< p, protein structures, protein partners, unexpected partners, unbound conformations, systematically investigated, sometimes contradictory, scoring function, rigid bodies, previous works, past years, molecular cross, large body, large amounts, interface matching, improving medicine

Relation: https://figshare.com/articles/figure/Comparison_with_DPPI_on_PPDBv2_/19089630

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009825.s011

المؤلفون: Chloé Dequeker (4966165), Yasser Mohseni Behbahani (12015675), Laurent David (157724), Elodie Laine (140035), Alessandra Carbone (124226)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, work may contribute, specific functional classes, several key ingredients, high discriminative power, ab initio <, protein structural models, characterising protein interactions, significant improvement compared, docking algorithm uses, div >< p, protein structures, protein partners, unexpected partners, unbound conformations, systematically investigated, sometimes contradictory, scoring function, rigid bodies, previous works, past years, molecular cross, large body, large amounts, interface matching, improving medicine

Relation: https://figshare.com/articles/figure/Sensitivity_of_partner_identification_to_approximations_in_the_reference_interfaces_/19089642

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009825.g004

المؤلفون: Chloé Dequeker (4966165), Yasser Mohseni Behbahani (12015675), Laurent David (157724), Elodie Laine (140035), Alessandra Carbone (124226)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, work may contribute, specific functional classes, several key ingredients, high discriminative power, ab initio <, protein structural models, characterising protein interactions, significant improvement compared, docking algorithm uses, div >< p, protein structures, protein partners, unexpected partners, unbound conformations, systematically investigated, sometimes contradictory, scoring function, rigid bodies, previous works, past years, molecular cross, large body, large amounts, interface matching, improving medicine

Relation: https://figshare.com/articles/dataset/Main_hyper-parameters_of_CCD2PI_/19089648

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009825.t001

المؤلفون: Chloé Dequeker (4966165), Yasser Mohseni Behbahani (12015675), Laurent David (157724), Elodie Laine (140035), Alessandra Carbone (124226)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, work may contribute, specific functional classes, several key ingredients, high discriminative power, ab initio <, protein structural models, characterising protein interactions, significant improvement compared, docking algorithm uses, div >< p, protein structures, protein partners, unexpected partners, unbound conformations, systematically investigated, sometimes contradictory, scoring function, rigid bodies, previous works, past years, molecular cross, large body, large amounts, interface matching, improving medicine

Relation: https://figshare.com/articles/figure/Assessment_of_CCD2PI_on_an_independent_dataset_and_comparison_with_a_sequence-based_deep_learning_method_/19089645

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009825.g005