المؤلفون: Weisberg, Alexandra, Lee, Namil, Chang, Jeff, Shih, Patrick, Waldburger, Lucas, Keasling, Jay, Thompson, Mitchell

المصدر: mSystems. 8(4)

مصطلحات موضوعية: agrobacterium, comparative transcriptomics, differential RNA-seq, evolution, pathogenesis, transcription start sites, Transcriptome, Promoter Regions, Genetic, Genomics, Gene Expression Regulation, Nucleotides

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/4xv8r59v
https://escholarship.org/content/qt4xv8r59v/qt4xv8r59v.pdf

المؤلفون: Lucas Waldburger, Mitchell G. Thompson, Alexandra J. Weisberg, Namil Lee, Jeff H. Chang, Jay D. Keasling, Patrick M. Shih

المصدر: mSystems, Vol 8, Iss 4 (2023)

مصطلحات موضوعية: agrobacterium, transcription start sites, differential RNA-seq, evolution, pathogenesis, comparative transcriptomics, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2379-5077

URL الوصول: https://doaj.org/article/9d88026871ca43c5854a4552a1ea73b5

المؤلفون: Thais Louise G. Carvalho, Aline C. Rosman, Clícia Grativol, Eduardo de M. Nogueira, José Ivo Baldani, Adriana S. Hemerly

المصدر: Plants; Volume 11; Issue 15; Pages: 1971

مصطلحات موضوعية: endophytic diazotrophic bacteria, nitrogen-fixing bacteria, differential RNA-seq transcriptome, nitrogen metabolism, plant receptors, auxin signaling

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Plant Protection and Biotic Interactions; https://dx.doi.org/10.3390/plants11151971

الاتاحة: https://doi.org/10.3390/plants11151971

المؤلفون: Carsten Haupka, Luciana F. Brito, Tobias Busche, Daniel Wibberg, Volker F. Wendisch

المصدر: Frontiers in Microbiology, Vol 12 (2021)

مصطلحات موضوعية: Bacillus methanolicus, physiology, 5-aminovalerate, bioplastics, differential RNA-Seq, whole-genome sequencing, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2021.664598/full; https://doaj.org/toc/1664-302X

URL الوصول: https://doaj.org/article/136312fb2a7649528dbcc09d0a3a47d2

المؤلفون: Haupka, Carsten, Fernandes de Brito, Luciana, Busche, Tobias, Wibberg, Daniel, Wendisch, Volker F.

مصطلحات موضوعية: Bacillus methanolicus, physiology, 5-aminovalerate, bioplastics, differential RNA-Seq, whole-genome sequencing, adaptive laboratory evolution, methylotroph, ddc:570

Relation: info:eu-repo/semantics/altIdentifier/issn/1664-302X; info:eu-repo/semantics/altIdentifier/wos/000649930400001; info:eu-repo/semantics/altIdentifier/pmid/33995329; https://nbn-resolving.org/urn:nbn:de:0070-pub-29530165; https://pub.uni-bielefeld.de/record/2953016; https://pub.uni-bielefeld.de/download/2953016/2954326

الاتاحة: https://nbn-resolving.org/urn:nbn:de:0070-pub-29530165
https://pub.uni-bielefeld.de/record/2953016
https://pub.uni-bielefeld.de/download/2953016/2954326

المؤلفون: Fuchs, Manuela, Lamm-Schmidt, Vanessa, Sulzer, Johannes, Ponath, Falk, Jenniches, Laura, Kirk, Joseph A, Fagan, Robert P, Barquist, Lars, Vogel, Jörg, Faber, Franziska

المساهمون: HIRI, Helmholtz-Institut für RNA-basierte Infektionsforschung, Josef-Shneider Strasse 2, 97080 Würzburg, Germany.

المصدر: 118 ; 25 ; Proceedings of the National Academy of Sciences of the United States of America ; United Kingdom ; United States

مصطلحات موضوعية: C. difficile, Hfq, differential RNA-seq, small RNA, transcript termination site

Relation: Proc Natl Acad Sci U S A. 2021 Jun 22;118(25):e2103579118. doi:10.1073/pnas.2103579118.; http://hdl.handle.net/10033/622979; Proceedings of the National Academy of Sciences of the United States of America

الاتاحة: http://hdl.handle.net/10033/622979
https://doi.org/10.1073/pnas.2103579118

المؤلفون: Almeida, João Paulo Pereira de

Thesis Advisors: Koide, Tie

مصطلحات موضوعية: Antisense RNAs (asRNAs), Archaea, Differential RNA-seq (dRNA-seq), Double-strand RNAs (dsRNAs), Halobacterium salinarum, Inícios de transcrição primários (TSSs), LSm, Lsm, Non-coding RNAs (ncRNAs), RNAs antisense (asRNAs), RNAs dupla fita (dsRNAs), RNAs não codificantes (ncRNAs), RNAse R, Sistemas toxinas-antitoxinas (TAs), Toxins-antitoxins systems (TAs), Transcription start sites (TSSs)

وصف الملف: application/pdf

الاتاحة: http://www.teses.usp.br/teses/disponiveis/17/17131/tde-15012019-101127/

المؤلفون: Mitschke, Jan, Vioque Peña, Agustín, Haas, Fabian, Hess, Wolfgang R., Muro Pastor, Alicia María

المساهمون: Universidad de Sevilla. Departamento de Bioquímica Vegetal y Biología Molecular

مصطلحات موضوعية: Prokaryotic cell differentiation, Antisense transcription, Heterocyst, Nitrogen fixation, Differential RNA-seq

Relation: Proceedings of the National Academy of Sciences of the United States of America, 108, 20130-20135.; SPP1258; 0313921; BFU2007-60651; BFU2010-14821; http://dx.doi.org/10.1073/pnas.1112724108; https://idus.us.es/handle/11441/68025

الاتاحة: https://idus.us.es/handle/11441/68025

المؤلفون: ARVALHO, T. G., ROSMAN, A. C., GRAVITOL, C., NOGUEIRA, E. de M., BALDANI, J. I., HEMERLY, A. S.

المساهمون: THAIS LOUISE G. CARVALHO, UFRJ, ALINE CARDOZO ROSMAN, UFRJ, CLICIA GRATIVOL, UENF, EDUARDO DE M. NOGUEIRA, UFRJ, JOSE IVO BALDANI, CNPAB, ADRIANA S. HEMERLY, UFRJ.

المصدر: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA-Alice)
Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA

مصطلحات موضوعية: Differential RNA seq, Nitrogen fixing bacteria, Nitrogen metabolism, Endophytic diazotrophic bacteria, Transcriptome

URL الوصول: https://explore.openaire.eu/search/publication?articleId=od______3056::8eae069ebc6999d40102c02079b3efef
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1147564

المؤلفون: Livia S. Zaramela, Tie Koide, Alan P. R. Lorenzetti, Ricardo Z N Vêncio, Ana Carolina Santana, Felipe ten-Caten

المصدر: RNA Biology
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP

مصطلحات موضوعية: 0301 basic medicine, Gene isoform, differential RNA-seq, Halobacterium salinarum, archaea, fusA, LUCA, Reading frame, gvpC, Computational biology, Biology, Genome, 03 medical and health sciences, dRNA-seq, aEF-2, orc4, dnaK, cydA, Molecular Biology, Gene, internal RNA, overlapping coding RNA, alternative protein, Alternative splicing, isoform, Cell Biology, IntraRNA, kef1, biology.organism_classification, dRNAseq, ancient phenomenon, Elongation factor, Open reading frame, intraORF, 030104 developmental biology, acs3, protein isoforms, alternative transcript, SEQUENCIAMENTO GENÉTICO, intraORFeome, Research Paper, uORF

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0bb8796009d3ceeec4118135ff56863f
http://europepmc.org/articles/PMC6161675

المؤلفون: Carsten Haupka (10727553), Luciana F. Brito (7107362), Tobias Busche (3067695), Daniel Wibberg (839038), Volker F. Wendisch (1739545)

مصطلحات موضوعية: Microbiology, Microbial Genetics, Microbial Ecology, Mycology, Bacillus methanolicus, physiology, 5-aminovalerate, bioplastics, differential RNA-Seq, whole-genome sequencing, adaptive laboratory evolution, methylotroph

Relation: https://figshare.com/articles/dataset/Data_Sheet_1_Genomic_and_Transcriptomic_Investigation_of_the_Physiological_Response_of_the_Methylotroph_Bacillus_methanolicus_to_5-Aminovalerate_PDF/14516985

الاتاحة: https://doi.org/10.3389/fmicb.2021.664598.s001

المؤلفون: João Paulo Pereira de Almeida

Thesis Advisors: Tie Koide, Angela Kaysel Cruz, Marilis do Valle Marques

المصدر: Biblioteca Digital de Teses e Dissertações da USPUniversidade de São PauloUSP.

مصطلحات موضوعية: Archaea, Differential RNA-seq (dRNA-seq), Halobacterium salinarum, Inícios de transcrição primários (TSSs), Lsm, RNAs antisense (asRNAs), RNAs dupla fita (dsRNAs), RNAs não codificantes (ncRNAs), RNAse R, Sistemas toxinas-antitoxinas (TAs), Antisense RNAs (asRNAs), Double-strand RNAs (dsRNAs), LSm, Non-coding RNAs (ncRNAs), Toxins-antitoxins systems (TAs), Transcription start sites (TSSs)

الاتاحة: http://www.teses.usp.br/teses/disponiveis/17/17131/tde-15012019-101127/

المؤلفون: Wolfgang R. Hess, Matthias Kopf

المصدر: FEMS Microbiology Reviews

مصطلحات موضوعية: differential RNA-seq, Review Article, Environment, Regulatory Sequences, Ribonucleic Acid, Cyanobacteria, Microbiology, 03 medical and health sciences, Bacterial Proteins, Stress, Physiological, Botany, 030304 developmental biology, Regulation of gene expression, 0303 health sciences, photosynthesis, biology, 030306 microbiology, Anabaena, Synechocystis, gene expression regulation, Gene Expression Regulation, Bacterial, Biotic stress, biology.organism_classification, Synechococcus, comparative transcriptome analysis, Cell biology, sRNAs, RNA, Bacterial, Infectious Diseases, Photosynthetic bacteria, Prochlorococcus, Transcriptome, Energy source

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::576b95e229028fba627b0a3e6eb733de
https://doi.org/10.1093/femsre/fuv017

المؤلفون: Papenfort, Kai M., Förstner, Konrad U., Cong, Jian-Ping, Sharma, Cynthia M., Bassler, Bonnie L.

مصطلحات موضوعية: RNA-Seq, differential RNA-Seq, Vibrio cholerae

Relation: https://doi.org/10.1073/pnas.1500203112; https://pubmed.ncbi.nlm.nih.gov/25646441; https://www.ncbi.nlm.nih.gov/pmc/PMC4343088; https://doi.org/; https://doi.org/10.5281/zenodo.13136; oai:zenodo.org:13136

الاتاحة: https://doi.org/10.5281/zenodo.13136

المؤلفون: Bischler, Thorsten, Kopf, Matthias, Voß, Björn

مصطلحات موضوعية: RNA-seq, Differential RNA-seq, Segmentation, Transcriptional unit, Transcriptome, Transcriptional start site, Dynamic programming

Relation: http://www.biomedcentral.com/1471-2105/15/122

الاتاحة: http://www.biomedcentral.com/1471-2105/15/122

المؤلفون: Alicia M. Muro-Pastor, Jan Mitschke, Fabian B. Haas, Wolfgang R. Hess, Agustín Vioque

المساهمون: Universidad de Sevilla. Departamento de Bioquímica Vegetal y Biología Molecular

المصدر: idUS. Depósito de Investigación de la Universidad de Sevilla
instname
Digital.CSIC. Repositorio Institucional del CSIC

مصطلحات موضوعية: RNA, Untranslated, Nitrogen, Cellular differentiation, Molecular Sequence Data, Regulon, Bacterial Proteins, Nitrogen fixation, Stress, Physiological, Antisense transcription, Nucleotide Motifs, Differential RNA-seq, Promoter Regions, Genetic, Heterocyst, Nostocales, Genetics, Binding Sites, Multidisciplinary, Base Sequence, biology, Anabaena, Chromosome Mapping, Promoter, Sequence Analysis, DNA, Biological Sciences, Chromosomes, Bacterial, biology.organism_classification, Fold change, Cell biology, Genes, Bacterial, Transcription Initiation Site, Prokaryotic cell differentiation

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c11351e90c59138ed664a395155ed256
http://hdl.handle.net/10261/75790

المؤلفون: Almeida, João Paulo Pereira de

المساهمون: Koide, Tie

مصطلحات موضوعية: Lsm, RNAs dupla fita (dsRNAs), RNAs não codificantes (ncRNAs), Inícios de transcrição primários (TSSs), Halobacterium salinarum, RNAs antisense (asRNAs), RNAse R, Differential RNA-seq (dRNA-seq), Sistemas toxinas-antitoxinas (TAs), Archaea, Toxins-antitoxins systems (TAs), Non-coding RNAs (ncRNAs), Antisense RNAs (asRNAs), Double-strand RNAs (dsRNAs), Transcription start sites (TSSs)

وصف الملف: application/pdf

Relation: http://www.teses.usp.br/teses/disponiveis/17/17131/tde-15012019-101127/

الاتاحة: http://www.teses.usp.br/teses/disponiveis/17/17131/tde-15012019-101127/
https://doi.org/10.11606/D.17.2019.tde-15012019-101127

المؤلفون: Waldburger, Lucas, Thompson, Mitchell G., Weisberg, Alexandra J., Lee, Namil, Chang, Jeff H. H., Keasling, Jay D., Shih, Patrick M. M.

المصدر: Waldburger , L , Thompson , M G , Weisberg , A J , Lee , N , Chang , J H H , Keasling , J D & Shih , P M M 2023 , ' Transcriptome architecture of the three main lineages of agrobacteria ' , mSystems , vol. 8 , no. 4 , e0033323 .

مصطلحات الفهرس: Agrobacterium, Transcription start sites, Differential RNA-seq, Evolution, Pathogenesis, Comparative transcriptomics, article

URL: https://orbit.dtu.dk/en/publications/6aac63e2-d0bc-4156-b7d5-2f55c5776232
https://doi.org/10.1128/msystems.00333-23
https://backend.orbit.dtu.dk/ws/files/335064102/msystems.00333-23.pdf

المؤلفون: Universidad de Sevilla. Departamento de Bioquímica Vegetal y Biología Molecular, Mitschke, Jan, Vioque Peña, Agustín, Haas, Fabian, Hess, Wolfgang R., Muro Pastor, Alicia María

مصطلحات الفهرس: Prokaryotic cell differentiation, Antisense transcription, Heterocyst, Nitrogen fixation, Differential RNA-seq, info:eu-repo/semantics/article

URL: http://hdl.handle.net/11441/68025
Proceedings of the National Academy of Sciences of the United States of America, 108, 20130-20135.
SPP1258
0313921
BFU2007-60651
BFU2010-14821
http://dx.doi.org/10.1073/pnas.1112724108