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1Academic Journal
المؤلفون: Zulfiqar, Mahnoor, Crusoe, Michael R., König-Ries, Birgitta, Steinbeck, Christoph, Peters, Kristian, Gadelha, Luiz
المساهمون: Kim, Seongho
مصطلحات موضوعية: article, ScholarlyArticle, ddc:540, workflow, FAIR, cheminformatics, metabolomics, CWL, CommonWL, Workflow RO-Crate, Docker, WorkflowHub, Bioschemas
وصف الملف: 16 Seiten
Relation: Metabolites -- 2218-1989; https://doi.org/10.3390/metabo14020118
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2Academic Journal
المؤلفون: Rusdiana Priatna Wijaya
المصدر: Malaysian Journal of Syariah and Law, Vol 11, Iss 2 (2023)
مصطلحات موضوعية: CWL-FRA, Cash Waqf, DINFRA, Economy Recovery, Islamic law, KBP1-4860, Law
وصف الملف: electronic resource
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3Conference
المؤلفون: Simone Leo, Laura Rodríguez-Navas, José M. Fernández, Paul De Geest, Luca Pireddu, Michael R. Crusoe, Daniel Garijo, Iacopo Colonnelli, Raül Sirvent, Stian Soiland-Reyes
المصدر: Elixir All Hands 2023, Dublin, Ireland, 2023-06-05 / --08
مصطلحات موضوعية: workflow, scientific workflow, provenance, FAIR, RO-Crate, CWL, Galaxy, Nextflow
Relation: https://f1000research.com/posters/12-592; https://www.researchobject.org/workflow-run-crate/profiles/; https://trefx.uk/; https://w3id.org/trusted-wfrun-crate/0.3; https://w3id.org/ro/wfrun/; https://schema.org/Action; https://zenodo.org/communities/ro; https://zenodo.org/communities/esciencelab; https://zenodo.org/communities/eu; https://doi.org/10.5281/zenodo.7996433; https://doi.org/10.5281/zenodo.7996434; oai:zenodo.org:7996434
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4Conference
مصطلحات موضوعية: workflow preservation, CWL, emulation, container
Relation: https://zenodo.org/communities/pv2023; https://doi.org/10.5281/zenodo.10280931; https://doi.org/10.5281/zenodo.10280932; oai:zenodo.org:10280932
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5Academic Journal
المؤلفون: Zafeiropoulos, Haris, Beracochea, Martin, Ninidakis, Stelios, Exter, Katrina, Potirakis, Antonis, De Moro, Gianluca, Richardson, Lorna, Corre, Erwan, Machado, João Paulo, Pafilis, Evangelos, Kotoulas, Georgios, Santi, Ioulia, Finn, Robert D, J. Cox, Cymon, Pavloudi, Christina
مصطلحات موضوعية: Shotgun metagenomics, MGnify, Common Workflow Language (CWL), Containers, Provenance, RO-Crate
Relation: info:eu-repo/grantAgreement/EC/H2020/824087/EU; info:eu-repo/grantAgreement/FCT/POCI-2010/SFRH%2FBD%2F14325%2F2003/PT; http://hdl.handle.net/10400.1/20624
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6Conference
المساهمون: Computational Algorithms for Protein Structures and Interactions (CAPSID), Inria Nancy - Grand Est, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Department of Complex Systems, Artificial Intelligence & Robotics (LORIA - AIS), Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), European Project: 813239,H2020-EU.1.3. - EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions / H2020-EU.1.3.1. - Fostering new skills by means of excellent initial training of researchers,10.3030/813239,RNAct(2019)
المصدر: ECCB2022- 21st European Conference on Computational Biology ; https://hal.science/hal-03789541 ; ECCB2022- 21st European Conference on Computational Biology, Sep 2022, Sitges, Spain. ⟨10.48546/WORKFLOWHUB.WORKFLOW.390.1⟩
مصطلحات موضوعية: Protein domains, CWL, Database integration, 3-D STRUCTURE, Pfam, CATH, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM], [INFO.INFO-DB]Computer Science [cs]/Databases [cs.DB]
Relation: info:eu-repo/grantAgreement//813239/EU/Enabling proteins with RNA recognition motifs for synthetic biology and bio-analytics/RNAct
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7Academic Journal
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8Academic Journal
المؤلفون: Amstutz, Peter, Andeer, Robin, Chapman, Brad, Chilton, John, Crusoe, Michael R, Valls Guimera, Roman, Carrasco Hernandez, Guillermo, Ivkovic, Sinisa, Kartashov, Andrey, Kern, John, Leehr, Dan, Ménager, Hervé, Mikheev, Maxim, Pierce, Tim, Randall, Josh, Soiland-Reyes, Stian, Stojanovic, Luka, Tijanić, Nebojša
URL الوصول: https://escholarship.org/uc/item/6wd8h2z1
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9Academic Journal
المؤلفون: Pengfei Ge, Xintong Ling, Jiaheng Wang, Xiao Liang, Shuo Li, Chunming Zhao
المصدر: IEEE Photonics Journal, Vol 13, Iss 1, Pp 1-19 (2021)
مصطلحات موضوعية: Center wavelength (CWL) shift, linear transceiver design, optical filter bank, precoder, visible light communication, Applied optics. Photonics, TA1501-1820, Optics. Light, QC350-467
وصف الملف: electronic resource
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10Academic JournalMethods Included:Standardizing Computational Reuse and Portability with the Common Workflow Language
المؤلفون: Crusoe, Michael R., Abeln, Sanne, Iosup, Alexandru, Amstutz, Peter, Chilton, John, Tijanić, Nebojša, Ménager, Hervé, Soiland-Reyes, Stian, Gavrilović, Bogdan, Goble, Carole A., The CWL Community
المصدر: Crusoe , M R , Abeln , S , Iosup , A , Amstutz , P , Chilton , J , Tijanić , N , Ménager , H , Soiland-Reyes , S , Gavrilović , B , Goble , C A & The CWL Community 2022 , ' Methods Included : Standardizing Computational Reuse and Portability with the Common Workflow Language ' , Communications of the ACM , vol. 65 , no. 6 , pp. 54–63 . https://doi.org/10.48550/arXiv.2105.07028 , https://doi.org/10.1145/3486897
مصطلحات موضوعية: workflows, computational data analysis, CWL, scientific workflows, standards
وصف الملف: application/pdf
الاتاحة: https://research.manchester.ac.uk/en/publications/df12f1a3-8af0-40fa-8989-c5e4eb1beea5
https://doi.org/10.48550/arXiv.2105.07028
https://pure.manchester.ac.uk/ws/files/218742952/3486897.pdf
https://www.commonwl.org/
https://cacm.acm.org/magazines/2022/6/261172-methods-included/fulltext
https://s11.no/2022/phd/methods-included/ -
11Academic Journal
المؤلفون: Crusoe, Michael R., Abeln, Sanne, Iosup, Alexandru, Amstutz, Peter, Chilton, John, Tijanić, Nebojša, Ménager, Hervé, Soiland-Reyes, Stian, Gavrilović, Bogdan, Goble, Carole, Community, The Cwl
المساهمون: Vrije Universiteit Amsterdam Amsterdam (VU), Software Freedom Conservancy, Pennsylvania State University (Penn State), Penn State System, Seven Bridges genomics, Hub Bioinformatique et Biostatistique - Bioinformatics and Biostatistics HUB, Institut Pasteur Paris (IP)-Université Paris Cité (UPCité), University of Manchester Manchester, University of Amsterdam Amsterdam = Universiteit van Amsterdam (UvA), European Commission grants BioExcel-2 (SSR) H2020-IN-FRAEDI-02-2018 823830, BioExcel (SSR) H2020-EINFRA-2015-1 675728, EOSC-Life (SSR) H2020-INFRAEOSC-2018-2 824087, EOSCPilot (MRC) H2020-IN-FRADEV-2016-2 739563, IBISBA 1.0 (SSR) H2020-INFRAIA-2017-1-two-stage 730976, ELIXIR-EXCELERATE (SSR, HM) H2020-INFRADEV-1-2015-1 676559, ASTERICS (MRC) INFRADEV-4-2014-2015. ELIXIR the research infrastructure for life-science data, Interoperability Platform Implementation Study (MRC). 2018-CWL. Various universities have also co-sponsored this project. We thank Vrije Universiteit of Amsterdam, the Netherlands, where the first three authors have their primary affiliation., The CWL project is immensely grateful to the following self-identified CWL Community members and their contributions to the project: Miguel d’Arcangues Boland (Software, Bug Reports, Maintenance), Alain Domissy (Conceptualization, Answering Questions, Tools), Andrey Kislyuk (Software, Bug Reports), Brandi Davis-Dusenbery (Conceptualization, Funding acquisition, Investigation, Project Administration, Resources, Su- pervision, Business Development, Event Organizing, Talks), Niels Drost (Funding Acquisition, Blogposts, Event Organizing, Tutorials, Talks), Robert Finn (Data acquisition, Funding acquisition, Investigation, Resources, Su- pervision), Michael Franklin (Software, Bug Reports, Documentation, Event Organizing, Maintenance, Tools, Answering Questions, Talks), (), Manabu Ishii (Blogposts, Documentation, Examples, Event Organizing, Maintenance, Tools, Answering Questions, Translation, Tutorials, Talks), Sinisa Ivkovic (Software, Validation, Bug Reports, Tools), Alexander Kanitz (Software, Business Development, Tools, Talks), Sehrish Kanwal (Conceptualization, Formal Analysis, Investigation, Software, Validation, Bug Reports, Blogposts, Content, Event Organizing, Maintenance, Answering Questions, Tools, Tutorials, Talks, User Testing), Andrey Kartashov (Conceptualization, Software, Validation, Examples, Tools, Answering Ques tions), Farah Khan (Conceptualization, Formal Analysis, Funding Acquisition, Software), Michael Kotliar (Software, Validation, Bug Reports, Blogposts, Examples, Maintenance, Answering Questions, Reviewed Contri butions, Tools, Talks, User Testing), Folker Meyer (Tools), Rupert Nash (Software, Bug Reports, Talks, Videos), Maya Nedeljkovich (Software, Validation, Visualization, Writing -- review & editing, Bug Reports, Tools, Talks), Tazro Ohta (Formal Analysis, Funding Acquisition, Resources, Val idation, Bug Reports, Blogposts, Content, Documentation, Examples, Event Organizing, Answering Questions, Tools, Translation, Tutorials, Talks, User Testing), Pjotr Prins (Blogposts, Packaging, Bug Reports), Manvendra Singh (Software, Blogposts, Packaging, Tools, Reviewed Contributions), Andrey Tovchigrechko (Conceptualization, Software, Bug Reports), Alan Williams (Investigation), Denis Yuen (Software, Bug Reports, Documentation, Tools), Alexander (Sasha) Wait Zaranek (Conceptualization, Funding Acquisition), Sarah Wait Zaranek (Conceptualization, Funding Acquisition, Project Administration, Resources, Software, Accessibility, Bug Reports, Business Development, Content, Examples, Event Organizing, Answering Questions, Tutorials, Talks)., European Project: 823830,H2020-EU.1.4.1.3. Development, deployment and operation of ICT-based e-infrastructures, H2020-EU.1.4. EXCELLENT SCIENCE - Research Infrastructures ,BioExcel-2(2019), European Project: 675728,H2020,H2020-EINFRA-2015-1,BioExcel(2015), European Project: 824087,EOSC-Life(2019), European Project: 676559,H2020,H2020-INFRADEV-1-2015-1,ELIXIR-EXCELERATE(2015), European Project: 653477,H2020,H2020-INFRADEV-1-2014-1,ASTERICS(2015)
المصدر: ISSN: 0001-0782.
مصطلحات موضوعية: Earth and atmospheric sciences, Enterprise interoperability, Enterprise computing infrastructures, Life and medical sciences, Bioinformatics, Transcriptomics, Computational proteomics, Population genetics, Systems biology, Computational biology, Computational genomics, Imaging, Computational transcriptomics, • Computer systems organization → Distributed architectures, Cloud computing, Grid computing, Data flow architectures workflows, computational data analysis, CWL, scientific workflows, standards, CCS CONCEPTS • Computing methodologies → Distributed computing methodologies, • General and reference → Computing standards, RFCs and guidelines, • Applied computing → Astronomy, [INFO]Computer Science [cs]
Relation: info:eu-repo/grantAgreement//823830/EU/BioExcel Centre of Excellence for ComputationalBiomolecular Research/BioExcel-2; info:eu-repo/grantAgreement//675728/EU/Centre of Excellence for Biomolecular Research/BioExcel; info:eu-repo/grantAgreement//824087/EU/Providing an open collaborative space for digital biology in Europe/EOSC-Life; info:eu-repo/grantAgreement//676559/EU/ELIXIR-EXCELERATE: Fast-track ELIXIR implementation and drive early user exploitation across the life-sciences./ELIXIR-EXCELERATE; info:eu-repo/grantAgreement//653477/EU/Astronomy ESFRI and Research Infrastructure Cluster/ASTERICS
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12
المؤلفون: Charette-Migneault, Francis
المساهمون: Computer Research Institute of Montréal, Charette-Migneault, Francis, Byrns, David, Caron, David, Pelletier, Francis, Gagnon-Grenier, Félix, Azeli, Nazim, Perron, Louis-David, Cummings, Charles-William, Trapsida, Nadir, Lacoursière, Éric, Schwartz, Misha
مصطلحات موضوعية: OGC, OGC API - Processes, CWL, Common Workflow Language, WPS, Web Processing Service, Workflow, Remote Execution, Web API, bird-house
Relation: https://doi.org/10.5281/zenodo.14210717; https://github.com/crim-ca/weaver; https://osf.io/d3esv/; https://pavics-weaver.readthedocs.io/; https://github.com/crim-ca/weaver/tree/6.0.0-post; https://zenodo.org/communities/crim; https://doi.org/10.5281/zenodo.14270893; oai:zenodo.org:14270893
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13
المؤلفون: Amstutz, Peter, Bértoli, Javier, Cesar, Nico, Clegg, Tom, Di Pentima, Lucas, Kutyla, Daniel, Li, Jiayong, Smith, Stephen, Vandewege, Ward, Wait Zaranek, Alexander, Wait Zaranek, Sarah, Knox, Lisa
مصطلحات موضوعية: CWL, Bioinformatics, Plaform, Big Data, Scientifc Wofklows
Relation: https://doi.org/10.5281/zenodo.6382942; https://doi.org/10.5281/zenodo.14164138; oai:zenodo.org:14164138
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14Book
المؤلفون: Strozzi, Francesco, Janssen, Roel, Wurmus, Ricardo, Crusoe, Michael R., Githinji, George, Di Tommaso, Paolo, Belhachemi, Dominique, Möller, Steffen, Smant, Geert, de Ligt, Joep, Prins, Pjotr
المصدر: Evolutionary Genomics ; ISBN: 9781493990733
مصطلحات موضوعية: Big data, Bioconda, Bioinformatics, CWL, Cloud computing, Cluster computing, Common Workflow Language, Debian Linux, Evolutionary biology, GNU Guix, Guix Workflow Language, MPI, MrBayes, Nextflow, Parallelization, Snakemake, Virtual machine
وصف الملف: application/pdf
Relation: https://edepot.wur.nl/497185
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15Academic Journal
المؤلفون: Sehrish Kanwal, Farah Zaib Khan, Andrew Lonie, Richard O. Sinnott
المصدر: BMC Bioinformatics, Vol 18, Iss 1, Pp 1-14 (2017)
مصطلحات موضوعية: Reproducibility, Provenance, Workflow, Galaxy, Cpipe, Common Workflow Language (CWL), Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5
وصف الملف: electronic resource
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16Conference
المصدر: BOSC, Bioinformatics Open Source Conference, Portland, Oregon, 2018-06-25 / 2018-06-30
مصطلحات موضوعية: research object, scientific workflow, workflow, provenance, prov, cwl, interoperability, linked data
Relation: https://doi.org/10.5281/zenodo.1215611; https://w3id.org/cwl/view/git/886df9de6713e06228d2560c40f451155a196383/tools/tRNA_selection.cwl; https://github.com/common-workflow-language/cwltool; https://f1000research.com/posters/7-916; https://slides.com/farahzkhan/cwlprov; https://github.com/common-workflow-language/cwltool/pull/676; https://doi.org/10.3390/informatics5010011; https://doi.org/10.1101/191783; https://doi.org/10.6084/m9.figshare.3115156.v2; https://doi.org/10.1016/j.future.2011.08.004; http://ceur-ws.org/Vol-903/paper-01.pdf; https://doi.org/10.1016/j.websem.2015.01.003; https://doi.org/10.1371/journal.pone.0080278; https://doi.org/10.1016/j.future.2017.01.008; https://doi.org/10.1186/2041-1480-5-41; https://doi.org/10.1186/s12859-017-1747-0; https://tools.ietf.org/id/draft-kunze-bagit-16; https://doi.org/10.1101/268755; https://doi.org/10.1093/nar/gkx967; https://doi.org/10.17061/phrp2541541; https://doi.org/10.1016/j.ascom.2014.09.002; https://doi.org/10.1371/journal.pcbi.1003285; https://doi.org/10.1126/science.aah6168; https://doi.org/10.1093/nar/gkw1032; https://doi.org/10.1007/11890850_16; https://doi.org/10.1109/eScience.2012.6404482; https://doi.org/10.1016/j.future.2013.09.018; https://zenodo.org/communities/ro; https://zenodo.org/communities/eu; https://zenodo.org/communities/bioexcel; https://doi.org/10.7490/f1000research.1115721.1; oai:zenodo.org:1304969
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17Academic Journal
المؤلفون: Farah Zaib Khan, Stian Soiland-Reyes, Richard O. Sinnott, Andrew Lonie, Carole Goble, Michael R. Crusoe
المساهمون: Peter Amstutz, Pau Ruiz Safont, Pjotr Prins, Brad Chapman, Christopher Ball, Lon Blauvelt, Tomoya Tanjo, Alban Gaignard
المصدر: GigaScience, 8(11), giz095, (2019-11-01)
مصطلحات موضوعية: Provenance, Common Workflow Language, CWL, Research Object, RO, BagIt, Interoperability, Scientific Workflows, Containers
Relation: https://doi.org/10.1109/BigData.2016.7840618; https://doi.org/10.5281/zenodo.592090; https://doi.org/10.5281/zenodo.51314; https://zenodo.org/record/1304969; https://doi.org/10.17632/xnwncxpw42.1; https://doi.org/10.17632/6wtpgr3kbj.1; https://doi.org/10.17632/97hj93mkfd.3; https://doi.org/10.5281/zenodo.1471376; https://doi.org/10.5281/zenodo.1471585; https://doi.org/10.5281/zenodo.1471589; https://zenodo.org/record/2841641; https://zenodo.org/record/2632836; https://zenodo.org/record/2838898; https://doi.org/10.5524/100625; https://github.com/stain/cwlprov-paper-gigascience; https://doi.org/10.1093/gigascience/giz095; https://zenodo.org/communities/ro; https://zenodo.org/communities/linkeddata; https://zenodo.org/communities/eu; https://doi.org/10.5281/zenodo.1208477; https://doi.org/10.5281/zenodo.3528059; oai:zenodo.org:3528059
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18Academic Journal
المؤلفون: Venkatesh R. Kulkarni, Piyush K. Bhandari, N. M. Mulik, Ayan A. Sengupta, Bhimaji D. Kanawade
المصدر: Journal of Water Resource Engineering & Pollution Studies, 4(3), 1-16, (2019-09-30)
مصطلحات موضوعية: CWL, wastewater, micro-organisms, pollution, plant species, aesthetics
Relation: https://zenodo.org/communities/mantechpublications; https://doi.org/10.5281/zenodo.3465396; https://doi.org/10.5281/zenodo.3465397; oai:zenodo.org:3465397
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19Conference
المصدر: BOSC, 18th Annual Bioinformatics Open Source Conference (BOSC 2017), ISMB/ECCB, ISMB/ECCB 2017, Prague, 2017-07-22/2017-07-23
مصطلحات موضوعية: CWL, common workflow language, visualization, web, workflow, scientific workflow
Relation: https://doi.org/10.5281/zenodo.823295; https://doi.org/10.5281/zenodo.823535; https://view.commonwl.org/; https://github.com/common-workflow-language/cwlviewer; https://zenodo.org/communities/eu; https://zenodo.org/communities/bioexcel; https://doi.org/10.7490/f1000research.1114375.1; oai:zenodo.org:826827
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20Conference
المصدر: Robinson , M , Soiland-Reyes , S , Crusoe , M R & Goble , C 2017 , ' Common Workflow Language Viewer : (Talk) ' , Bioinformatics Open Source Conference (BOSC) 2017 , Prague , Czech Republic , 22/07/17 - 23/07/17 . https://doi.org/10.7490/f1000research.1114453.1
مصطلحات موضوعية: cwl, workflows, scientific workflows, research object, visualization
وصف الملف: application/pdf
الاتاحة: https://research.manchester.ac.uk/en/publications/d4c2e0be-3f4e-436b-ab3b-a4ad7fbaba04
https://doi.org/10.7490/f1000research.1114453.1
https://pure.manchester.ac.uk/ws/files/58595733/BOSC_2017_paper_27.pdf
https://view.commonwl.org/
https://www.youtube.com/watch?v=iB_0l-Bm4nA
http://slides.com/markrobinson/cwlviewer