المؤلفون: Jeongyun Lee, Sang-Hoon Kim, Sangkee Rhee

المصدر: RNA Biology, Vol 21, Iss 1, Pp 157-166 (2024)

مصطلحات موضوعية: Crystal structure, C-nucleoside, metalloenzyme, conformational changes, substrate fidelity, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1547-6286; https://doaj.org/toc/1555-8584

URL الوصول: https://doaj.org/article/87246b171f314d798a57a33e88aace42

المؤلفون: Tarikul I. Milon, Krishna Rauniyar, Sara Furman, Khairum H. Orthi, Yingchun Wang, Vijay Raghavan, Wu Xu

المصدر: Kinases and Phosphatases, Vol 2, Iss 4, Pp 315-339 (2024)

مصطلحات موضوعية: TSR-based method, kinases, phosphatases, phosphorylation, conformational changes, 3D structures, Biochemistry, QD415-436, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://www.mdpi.com/2813-3757/2/4/21; https://doaj.org/toc/2813-3757

URL الوصول: https://doaj.org/article/1aafaabb99d74167b1694d5b013eaa89

المؤلفون: Vibhu Jha, Leif A. Eriksson

المصدر: Scientific Reports, Vol 14, Iss 1, Pp 1-20 (2024)

مصطلحات موضوعية: Diaminopyrimidine-based inhibitors, Molecular dynamics simulation, Molecular docking, Substrate binding site, Conformational changes, Medicine, Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2045-2322

URL الوصول: https://doaj.org/article/c7b319449a7e40df8795f0d51351fc2e

المؤلفون: Motycka, Bettina, Csarman, Florian, Tscheliessnig, Rupert, Hammel, Michal, Ludwig, Roland

المصدر: The FEBS Journal. 290(19)

مصطلحات موضوعية: Biochemistry and Cell Biology, Chemical Sciences, Biological Sciences, Scattering, Small Angle, X-Rays, X-Ray Diffraction, Cytochromes, Carbohydrate Dehydrogenases, Polysaccharides, Ions, Cellobiose, cellobiose dehydrogenase, conformational changes, interdomain electron transfer, multistate modelling, small angle X-ray scattering, Sordariales, Medicinal and Biomolecular Chemistry, Medical Biochemistry and Metabolomics, Biochemistry & Molecular Biology, Biochemistry and cell biology, Medical biochemistry and metabolomics, Medicinal and biomolecular chemistry

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/4v724760
https://escholarship.org/content/qt4v724760/qt4v724760.pdf

المؤلفون: Vineeta Kaushik, Luca Gessa, Nelam Kumar, Matyáš Pinkas, Mariusz Czarnocki-Cieciura, Krzysztof Palczewski, Jiří Nováček, Humberto Fernandes

المصدر: Open Biology, Vol 15, Iss 1 (2025)

مصطلحات موضوعية: RBP3, cryoEM structure, SAXS, conformational changes, molecular docking, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2046-2441

URL الوصول: https://doaj.org/article/294bcd2d1ffb4382aa030ee3a38e3e8a

المؤلفون: Benjamin McMaster, Christopher J. Thorpe, Jamie Rossjohn, Charlotte M. Deane, Hashem Koohy

المصدر: Frontiers in Immunology, Vol 15 (2024)

مصطلحات موضوعية: TCR, MHC, peptide, HLA, conformational changes, T cell antigen specificity, Immunologic diseases. Allergy, RC581-607

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2024.1491656/full; https://doaj.org/toc/1664-3224

URL الوصول: https://doaj.org/article/2331d3c5d2894b149ead1b291cba1917

المؤلفون: Ivana Fenoglio, Shagufta Gul, Francesco Barbero, Enrica Mecarelli, Claudio Medana, Angelo Gallo, Carlotta Polizzi

المصدر: Heliyon, Vol 10, Iss 23, Pp e40587- (2024)

مصطلحات موضوعية: Carbon nanomaterials, Cytochrome c, Peroxidase activity, Heme iron, Electron transfer, Conformational changes, Science (General), Q1-390, Social sciences (General), H1-99

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2405844024166182; https://doaj.org/toc/2405-8440

URL الوصول: https://doaj.org/article/f2e91be94c604a23af1ccf359447f921

المؤلفون: Yao Hu, Hao Yang, Mingwei Li, Zhicheng Zhong, Yongqi Zhou, Fang Bai, Qian Wang

المصدر: Advanced Science, Vol 11, Iss 44, Pp n/a-n/a (2024)

مصطلحات موضوعية: conformational changes, deep learning, proteins, transition pathway, Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2198-3844

URL الوصول: https://doaj.org/article/f8b0bf1b3c494124945007c66190b7ab

المؤلفون: Meng Cui, Yongcheng Lu, Xinyi Ma, Diomedes E. Logothetis

المصدر: Frontiers in Physiology, Vol 15 (2024)

مصطلحات موضوعية: GIRK channel, cholesterol, MD simulations, protein-ligand interactions, ion channel activation, conformational changes, Physiology, QP1-981

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fphys.2024.1486362/full; https://doaj.org/toc/1664-042X

URL الوصول: https://doaj.org/article/8b8aa5de513e43bbb29f62a2663a4772

المؤلفون: Zhao, Yizhen, Zhao, Yifan, Xie, Linke, Li, Qian, Zhang, Yuze, Zang, Yongjian, Li, Xuhua, Zhang, Lei, Yang, Zhiwei

المصدر: International Journal of Molecular Sciences. 24(7)

مصطلحات موضوعية: Macromolecular and Materials Chemistry, Medicinal and Biomolecular Chemistry, Chemical Sciences, Pneumonia & Influenza, Infectious Diseases, Biodefense, Vaccine Related, Emerging Infectious Diseases, Prevention, 5.1 Pharmaceuticals, Development of treatments and therapeutic interventions, Good Health and Well Being, Humans, SARS-CoV-2, COVID-19, Molecular Dynamics Simulation, Ligands, Protein Binding, Antiviral Agents, Molecular Docking Simulation, spike trimer, in situ full-length structure, dynamic conformational changes, molecular dynamics simulations, SARS-CoV-2 inhibitors, Other Chemical Sciences, Genetics, Other Biological Sciences, Chemical Physics, Biochemistry and cell biology, Microbiology, Medicinal and biomolecular chemistry

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/3748n3w1
https://escholarship.org/content/qt3748n3w1/qt3748n3w1.pdf

المؤلفون: Roya Gholami, Khaled Azizi, Mokhtar Ganjali Koli

المصدر: Scientific Reports, Vol 14, Iss 1, Pp 1-15 (2024)

مصطلحات موضوعية: Inclusion complex, Cyclodextrin derivatives, Molecular dynamics simulation, Drug delivery systems, Thermodynamic properties, Conformational changes, Medicine, Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2045-2322

URL الوصول: https://doaj.org/article/b4909f82ae884f93b70a9c1406accfaf

المؤلفون: Knecht, Wolfgang, Fisher, S. Z., Lou, Jiaqi, Sele, Céleste, Ma, Shumeng, Rasmussen, Anna A., Pinotsis, Nikos, Kozielski, Frank

المصدر: International Journal of Molecular Sciences. 24(17)

مصطلحات موضوعية: SARS-CoV-2, COVID-19, non-structural proteins, nsp10, SAXS, oligomeric state, conformational changes, Naturvetenskap, Biologi, Biokemi och molekylärbiologi, Natural Sciences, Biological Sciences, Biochemistry and Molecular Biology

URL الوصول: https://lup.lub.lu.se/record/eceb5dd6-9e84-428d-8235-55e13b6ee2fc
http://dx.doi.org/10.3390/ijms241713649

المؤلفون: Olga V. Kryukova, Igor O. Islanov, Elena V. Zaklyazminskaya, Dmitry O. Korostin, Vera A. Belova, Valery V. Cheranev, Zhanna A. Repinskaia, Svetlana A. Tonevitskaya, Pavel A. Petukhov, Steven M. Dudek, Olga A. Kost, Denis V. Rebrikov, Sergei M. Danilov

المصدر: Biomedicines, Vol 12, Iss 10, p 2410 (2024)

مصطلحات موضوعية: angiotensin-I-converting enzyme, mutations, conformational changes, blood ACE, screening, Alzheimer’s disease, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://www.mdpi.com/2227-9059/12/10/2410; https://doaj.org/toc/2227-9059

URL الوصول: https://doaj.org/article/fec2d51505614ad39c00be20888d461e

المؤلفون: Meng Cui, Yongcheng Lu, Mihaly Mezei, Diomedes E. Logothetis

المصدر: Molecules, Vol 29, Iss 20, p 4935 (2024)

مصطلحات موضوعية: G-protein-coupled receptor (GPCR), 5HT2A receptor, MD simulations, protein−ligand interactions, receptor activation, conformational changes, Organic chemistry, QD241-441

وصف الملف: electronic resource

Relation: https://www.mdpi.com/1420-3049/29/20/4935; https://doaj.org/toc/1420-3049

URL الوصول: https://doaj.org/article/7fdcad8696aa41799e900a4ea3c36d53

المؤلفون: Ignacio de la Mora-de la Mora, Itzhel García-Torres, Luis Antonio Flores-López, Gabriel López-Velázquez, Gloria Hernández-Alcántara, Saúl Gómez-Manzo, Sergio Enríquez-Flores

المصدر: Molecules, Vol 29, Iss 21, p 5047 (2024)

مصطلحات موضوعية: spectroscopic analysis, protein structure–function relationship, molecular dysfunction, conformational changes, molecular wear, catalytic aging, Organic chemistry, QD241-441

وصف الملف: electronic resource

Relation: https://www.mdpi.com/1420-3049/29/21/5047; https://doaj.org/toc/1420-3049

URL الوصول: https://doaj.org/article/af710411fdd9494393713ce2d7fc65e9

المؤلفون: Saba Ghasemlou, Herma M. Cuppen

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Physiology, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, one direction appear, whether conformational changes, conformational changes appear, free energy involved, structural changes draw, state phase transition, concerted phase change, conformational changes occur, conformational change, phase transition, phase transitions, perpendicular direction, packing changes, less concerted, transition occurs, structural inspection, structural features, two perspectives, two directions, system size, scaling behavior, molecular conformation, likely applicable

Relation: https://figshare.com/articles/journal_contribution/Mechanism_of_Phase_Transition_in_dl-Methionine_Determining_Cooperative_and_Molecule-by-Molecule_Transformations/24963857

الاتاحة: https://doi.org/10.1021/acsomega.3c04846.s001
https://figshare.com/articles/journal_contribution/Mechanism_of_Phase_Transition_in_dl-Methionine_Determining_Cooperative_and_Molecule-by-Molecule_Transformations/24963857

المؤلفون: Fangchen Hu, Yiqiu Wang, Juan Zeng, Xianming Deng, Fei Xia, Xin Xu

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Sociology, Hematology, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, provide crucial information, guanosine triphosphate hydrolysis, stable states involved, conformational changes involved, inactive state 1, active state 2, two distinct states, detailed simulation study, state transition mechanisms, conformational changes, state transition, state 2, state 1, two states, simulation results, mechanisms underlying, state transitions, product state, intermediate state, valuable reference

Relation: https://figshare.com/articles/journal_contribution/Unveiling_the_State_Transition_Mechanisms_of_Ras_Proteins_through_Enhanced_Sampling_and_QM_MM_Simulations/25161332

الاتاحة: https://doi.org/10.1021/acs.jpcb.3c07666.s001
https://figshare.com/articles/journal_contribution/Unveiling_the_State_Transition_Mechanisms_of_Ras_Proteins_through_Enhanced_Sampling_and_QM_MM_Simulations/25161332

المؤلفون: Rahul Yadav, Atanu Nandy, Asim Bisoi, Saptarshi Mukherjee

مصطلحات موضوعية: Biophysics, Biochemistry, Molecular Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, two bile salts, displays pronounced esterase, dimethylammonio ]- 1, could reversibly tune, amino acids surrounding, >- nitrophenyl acetate, 3 -[( 3, receptor binding ), three sequestrating agents, mixed micelles formed, human serum transferrin, like structure using, effective catalytic activity, like activity toward, induced denatured fe, induced conformational changes, metal binding center, sequestrating agents, mixed micelles, conformational changes, like structure, catalytic activity, metal ion, ligand binding

Relation: https://figshare.com/articles/journal_contribution/Exploring_the_Specific_Role_of_Iron_Center_in_the_Catalytic_Activity_of_Human_Serum_Transferrin_CTAB-Induced_Conformational_Changes_and_Sequestration_by_Mixed_Micelles/25388479

الاتاحة: https://doi.org/10.1021/acs.langmuir.3c03414.s001

المؤلفون: Ryan E. Odstrcil, Prashanta Dutta, Jin Liu

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, positively charged residues, closely packed cluster, nthl1 mutant demonstrates, stable ), closed, dna repair pathway, protein conformational changes, dna repair, conformational changes, unstable ), protein conformations, human nthl1, reaction coordinate, proteins rely, molecular mechanisms, many processes, linker could, genetic abnormalities, extremely challenging, enhanced sampling, better modulation

Relation: https://figshare.com/articles/journal_contribution/Enhanced_Sampling_for_Conformational_Changes_and_Molecular_Mechanisms_of_Human_NTHL1/25408368

الاتاحة: https://doi.org/10.1021/acs.jpclett.4c00161.s001

المؤلفون: Emma J. Walker, Carlin J. Hamill, Rory Crean, Michael S. Connolly, Annmaree K. Warrender, Kirsty L. Kraakman, Erica J. Prentice, Alistair Steyn-Ross, Moira Steyn-Ross, Christopher R. Pudney, Marc W. van der Kamp, Louis A. Schipper, Adrian J. Mulholland, Vickery L. Arcus

مصطلحات موضوعية: Biophysics, Biochemistry, Sociology, Computational Biology, Astronomical and Space Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, thermophilic alcohol dehydrogenase, restricted conformational landscape, ray crystal structure, conformational landscape traversed, appreciable negative values, 10 å ), curved arrhenius plots, cooperative conformational transition, catalyzed reactions occur, cooperative conformational changes, conformational space along, conformational changes required, reaction coordinate ), fewer data points, activation heat capacity, transition state stabilization, transition state complex, wide temperature interval, transition state conformation, linear temperature dependence, reaction coordinate, heat capacity, transition state

Relation: https://figshare.com/articles/journal_contribution/Cooperative_Conformational_Transitions_Underpin_the_Activation_Heat_Capacity_in_the_Temperature_Dependence_of_Enzyme_Catalysis/25370252

الاتاحة: https://doi.org/10.1021/acscatal.3c05584.s001