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1Academic Journal
المؤلفون: Jing Che, Mao Ye, Qingzhi He, Guoyan Zeng, Miaomiao Li, Weilong Chen, Xiaoting Pan, Jiaorong Qian, Yexin Lv
المصدر: Frontiers in Plant Science, Vol 16 (2025)
مصطلحات موضوعية: biodiversity, species composition, community phylogenetic diversity, community phylogenetic structure, environmental factors, Plant culture, SB1-1110
وصف الملف: electronic resource
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2Academic Journal
المؤلفون: Lei Dong, Ying Zheng, Jian Wang, Jinrong Li, Zhiyong Li, Jinghui Zhang, Lixin Wang, Bailing Miao, Cunzhu Liang
المصدر: Frontiers in Plant Science, Vol 13 (2022)
مصطلحات موضوعية: community phylogenetic structure, extreme climate, Inner Mongolia, interspecies competition, intra-annual dynamics, net relatedness index, Plant culture, SB1-1110
وصف الملف: electronic resource
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3Academic Journal
المؤلفون: Lanier, Hayley C, Edwards, Danielle L, Knowles, L Lacey
المصدر: Journal of Biogeography. 40(6)
مصطلحات موضوعية: Arid zone, Australia, community phylogenetic structure, Ctenotus, Ctenophorus, Diplodactylinae, IBRA regions, Lerista, Pygopodidae, Sminthopsinae, Earth Sciences, Environmental Sciences, Biological Sciences, Ecology
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/19f8q0w2
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4Academic Journal
المؤلفون: Kembel, Steven W., Hubbell, Stephen P.
المصدر: Ecology, 2006 Jul 01. 87(7), S86-S99.
URL الوصول: https://www.jstor.org/stable/20069159
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5Academic Journal
المؤلفون: Webb, Campbell O., Gilbert, Gregory S., Donoghue, Michael J.
المصدر: Ecology, 2006 Jul 01. 87(7), S123-S131.
URL الوصول: https://www.jstor.org/stable/20069162
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6
المؤلفون: Lei Dong, Ying Zheng, Jian Wang, Jinrong Li, Zhiyong Li, Jinghui Zhang, Lixin Wang, Bailing Miao, Cunzhu Liang
مصطلحات موضوعية: Botany, Plant Biology, Plant Systematics and Taxonomy, Plant Cell and Molecular Biology, Plant Developmental and Reproductive Biology, Plant Pathology, Plant Physiology, Plant Biology not elsewhere classified, community phylogenetic structure, extreme climate, Inner Mongolia, interspecies competition, intra-annual dynamics, net relatedness index, steppe
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7
المؤلفون: Daijiang Li, Pamela S. Soltis, Douglas E. Soltis, Robert P. Guralnick, Lauren B. Trotta, Hannah E. Marx, Benjamin Baiser, Miao Sun, Julie M. Allen
المصدر: Ecology
مصطلحات موضوعية: 0106 biological sciences, Beta diversity, Tree of life, Biology, 010603 evolutionary biology, 01 natural sciences, Article, 03 medical and health sciences, community phylogenetic structure, Phylogenetics, Ecology, Evolution, Behavior and Systematics, Phylogeny, 030304 developmental biology, 0303 health sciences, Phylogenetic tree, open tree of life, trait, Ecology, 010604 marine biology & hydrobiology, phylogenetic signal, Articles, alpha diversity, Tree (graph theory), Phylogenetic diversity, Evolutionary biology, Trait, phylogenetic diversity, Pairwise comparison, Alpha diversity, beta diversity, Gene sequence
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8Academic Journal
المؤلفون: Li, Daijiang, Trotta, Lauren, Marx, Hannah E., Allen, Julie M., Sun, Miao, Soltis, Douglas E., Soltis, Pamela S., Guralnick, Robert P., Baiser, Benjamin
مصطلحات موضوعية: phylogenetic signal, trait, alpha diversity, open tree of life, community phylogenetic structure, beta diversity, phylogenetic diversity, Ecology and Evolutionary Biology, Science
وصف الملف: application/pdf
Relation: Li, Daijiang; Trotta, Lauren; Marx, Hannah E.; Allen, Julie M.; Sun, Miao; Soltis, Douglas E.; Soltis, Pamela S.; Guralnick, Robert P.; Baiser, Benjamin (2019). "For common community phylogenetic analyses, go ahead and use synthesis phylogenies." Ecology 100(9): n/a-n/a.; https://hdl.handle.net/2027.42/151322; Ecology; Pons, J., T. G. Barraclough, J. Gomez‐Zurita, A. Cardoso, D. P. Duran, S. Hazell, S. Kamoun, W. D. Sumlin, and A. P. Vogler. 2006. Sequence‐based species delimitation for the DNA taxonomy of undescribed insects. Systematic Biology 55: 595 – 609.; Li, D., and D. M. Waller. 2017. Fire exclusion and climate change interact to affect long‐term changes in the functional composition of plant communities. Diversity and Distributions 23: 496 – 506.; Li, D., A. R. Ives, and D. M. Waller. 2017. Can functional traits account for phylogenetic signal in community composition? New Phytologist 214: 607 – 618.; Lozupone, C., and R. Knight. 2005. UniFrac: A new phylogenetic method for comparing microbial communities. Applied and Environmental Microbiology 71: 8228 – 8235.; Maherali, H., and J. N. Klironomos. 2007. Influence of phylogeny on fungal community assembly and ecosystem functioning. Science 316: 1746 – 1748.; Marx, H. E., C. Dentant, J. Renaud, R. Delunel, D. C. Tank, and S. Lavergne. 2017. Riders in the sky (islands): Using a mega‐phylogenetic approach to understand plant species distribution and coexistence at the altitudinal limits of angiosperm plant life. Journal of Biogeography 44: 2618 – 2630.; Miller, E. T., D. R. Farine, and C. H. Trisos. 2017. Phylogenetic community structure metrics and null models: A review with new methods and software. Ecography 40: 461 – 477.; Molina‐Venegas, R., and M. Á. Rodriguez. 2017. Revisiting phylogenetic signal; strong or negligible impacts of polytomies and branch length information? BMC Evolutionary Biology 17: 53.; Münkemüller, T., S. Lavergne, B. Bzeznik, S. Dray, T. Jombart, K. Schiffers, and W. Thuiller. 2012. How to measure and test phylogenetic signal. Methods in Ecology and Evolution 3: 743 – 756.; Pagel, M. 1999. Inferring the historical patterns of biological evolution. Nature 401: 877.; Paradis, E., J. Claude, and K. Strimmer. 2004. APE: Analyses of phylogenetics and evolution in R language. Bioinformatics 20: 289 – 290.; Park, D. S., S. Worthington, and Z. Xi. 2018. Taxon sampling effects on the quantification and comparison of community phylogenetic diversity. Molecular Ecology 27: 1296 – 1308.; Patrick, L. E., and R. D. Stevens. 2014. Investigating sensitivity of phylogenetic community structure metrics using North American desert bats. Journal of Mammalogy 95: 1240 – 1253.; Pearse, W. D., and A. Purvis. 2013. PhyloGenerator: An automated phylogeny generation tool for ecologists. Methods in Ecology and Evolution 4: 692 – 698.; Stamatakis, A. 2014. RAxML version 8: A tool for phylogenetic analysis and post‐analysis of large phylogenies. Bioinformatics 30: 1312 – 1313.; Qian, H., and J. Zhang. 2016. Are phylogenies derived from family‐level supertrees robust for studies on macroecological patterns along environmental gradients? Journal of Systematics and Evolution 54: 29 – 36.; R Core Team. 2017. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. www.r-project.org; Rabosky, D. L., F. Santini, J. Eastman, S. A. Smith, B. Sidlauskas, J. Chang, and M. E. Alfaro. 2013. Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation. Nature Communications 4: 1958.; Ronquist, F., and J. P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572 – 1574.; Smith, M. A., W. Hallwachs, and D. H. Janzen. 2014. Diversity and phylogenetic community structure of ants along a Costa Rican elevational gradient. Ecography 37: 720 – 731.; Smith, S. A., J. M. Beaulieu, and M. J. Donoghue. 2009. Mega‐phylogeny approach for comparative biology: An alternative to supertree and supermatrix approaches. BMC Evolutionary Biology 9: 37.; Smith, S. A., and J. W. Brown. 2018. Constructing a broadly inclusive seed plant phylogeny. American Journal of Botany 105: 302 – 314.; Swenson, N. G. 2009. Phylogenetic resolution and quantifying the phylogenetic diversity and dispersion of communities. PLoS ONE 4: e4390.; Trotta, L., B. Baiser, J. Possley, D. Li, J. Lange, S. Martin, and E. Sessa. 2018. Community phylogeny of the globally critically imperiled pine rockland ecosystem. American Journal of Botany 105: 1735 – 1747.; Tsirogiannis, C., and B. Sandel. 2016. PhyloMeasures: A package for computing phylogenetic biodiversity measures and their statistical moments. Ecography 39: 709 – 714.; Tucker, C. M., M. W. Cadotte, S. B. Carvalho, T. J. Davies, S. Ferrier, S. A. Fritz, R. Grenyer, M. R. Helmus, L. S. Jin, and A. O. Mooers. 2017. A guide to phylogenetic metrics for conservation, community ecology and macroecology. Biological Reviews 92: 698 – 715.; Vamosi, S., S. Heard, J. Vamosi, and C. Webb. 2009. Emerging patterns in the comparative analysis of phylogenetic community structure. Molecular Ecology 18: 572 – 592.; Webb, C. O., D. D. Ackerly, M. A. McPeek, and M. J. Donoghue. 2002. Phylogenies and community ecology. Annual Review of Ecology and Systematics 33: 475 – 505.; Webb, C. O., D. D. Ackerly, and S. W. Kembel. 2008. Phylocom: Software for the analysis of phylogenetic community structure and trait evolution. Bioinformatics 24: 2098 – 2100.; Webb, C. O., and M. J. Donoghue. 2005. Phylomatic: Tree assembly for applied phylogenetics. Molecular Ecology Resources 5: 181 – 183.; Wikström, N., V. Savolainen, and M. W. Chase. 2001. Evolution of the angiosperms: Calibrating the family tree. Proceedings of the Royal Society B 268: 2211 – 2220.; Zanne, A. E., D. C. Tank, W. K. Cornwell, J. M. Eastman, S. A. Smith, R. G. FitzJohn, D. J. McGlinn, B. C. O’Meara, A. T. Moles, and P. B. Reich. 2014. Three keys to the radiation of angiosperms into freezing environments. Nature 506: 89 – 92.; Forest, F., R. Grenyer, M. Rouget, T. J. Davies, R. M. Cowling, D. P. Faith, A. Balmford, J. C. Manning, Ş. Procheş, and M. van der Bank. 2007. Preserving the evolutionary potential of floras in biodiversity hotspots. Nature 445: 757 – 760.; Fritz, S. A., O. R. Bininda‐Emonds, and A. Purvis. 2009. Geographical variation in predictors of mammalian extinction risk: Big is bad, but only in the tropics. Ecology Letters 12: 538 – 549.; Hebert, P. D., E. H. Penton, J. M. Burns, D. H. Janzen, and W. Hallwachs. 2004. Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly astraptes fulgerator. Proceedings of the National Academy of Sciences of the United States of America 101: 14812 – 14817.; Allen, J. M. et al. 2019. Spatial phylogenetics of florida vascular plants: The effects of calibration and uncertainty on diversity estimates. IScience 11: 57 – 70.; Antonelli, A., H. Hettling, F. L. Condamine, K. Vos, R. H. Nilsson, M. J. Sanderson, H. Sauquet, R. Scharn, D. Silvestro, and M. Töpel. 2017. Toward a self‐updating platform for estimating rates of speciation and migration, ages, and relationships of taxa. Systematic Biology 66: 152 – 166.; APG III. 2009. An update of the angiosperm phylogeny group classification for the orders and families of flowering plants: APG III. Botanical Journal of the Linnean Society 161: 105 – 121.; APG IV et al. 2016. An update of the angiosperm phylogeny group classification for the orders and families of flowering plants: APG IV. Botanical Journal of the Linnean Society 181: 1 – 20.; Baum, D. A., and S. D. Smith. 2012. Tree thinking: An introduction to phylogenetic biology. Roberts Co., Greenwood Village, Colorado, USA.; Bininda‐Emonds, O. R., M. Cardillo, K. E. Jones, R. D. MacPhee, R. M. Beck, R. Grenyer, S. A. Price, R. A. Vos, J. L. Gittleman, and A. Purvis. 2007. The delayed rise of present‐day mammals. Nature 446: 507.; Blomberg, S. P., T. Garland, and A. R. Ives. 2003. Testing for phylogenetic signal in comparative data: Behavioral traits are more labile. Evolution 57: 717 – 745.; Boyle, E. E., and S. J. Adamowicz. 2015. Community phylogenetics: Assessing tree reconstruction methods and the utility of DNA barcodes. PLoS ONE 10: e0126662.; Cadotte, M. W. 2015. Phylogenetic diversity–ecosystem function relationships are insensitive to phylogenetic edge lengths. Functional Ecology 29: 718 – 723.; Cardillo, M. 2011. Phylogenetic structure of mammal assemblages at large geographical scales: Linking phylogenetic community ecology with macroecology. Philosophical Transactions of the Royal Society B 366: 2545 – 2553.; Cavender‐Bares, J., and P. B. Reich. 2012. Shocks to the system: Community assembly of the oak savanna in a 40‐year fire frequency experiment. Ecology 93: S52 – S69.; Cavender‐Bares, J., A. Keen, and B. Miles. 2006. Phylogenetic structure of Floridian plant communities depends on taxonomic and spatial scale. Ecology 87: S109 – S122.; Cavender‐Bares, J., K. H. Kozak, P. V. Fine, and S. W. Kembel. 2009. The merging of community ecology and phylogenetic biology. Ecology Letters 12: 693 – 715.; Davies, T. J., N. J. Kraft, N. Salamin, and E. M. Wolkovich. 2012. Incompletely resolved phylogenetic trees inflate estimates of phylogenetic conservatism. Ecology 93: 242 – 247.; Drummond, A. J., and A. Rambaut. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7: 214.; Eastman, J. M., L. J. Harmon, and D. C. Tank. 2013. Congruification: Support for time scaling large phylogenetic trees. Methods in Ecology and Evolution 4: 688 – 691.; Edgar, R. C. 2004. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792 – 1797.; Faith, D. P. 1992. Conservation evaluation and phylogenetic diversity. Biological Conservation 61: 1 – 10.; Helmus, M. R., K. Savage, M. W. Diebel, J. T. Maxted, and A. R. Ives. 2007. Separating the determinants of phylogenetic community structure. Ecology Letters 10: 917 – 925.; Hinchliff, C. E., S. A. Smith, J. F. Allman, J. G. Burleigh, R. Chaudhary, L. M. Coghill, K. A. Crandall, J. Deng, B. T. Drew, and R. Gazis. 2015. Synthesis of phylogeny and taxonomy into a comprehensive tree of life. Proceedings of the National Academy of Sciences 112: 12764 – 12769.; Ives, A. R., and M. R. Helmus. 2010. Phylogenetic metrics of community similarity. American Naturalist 176: E128 – E142.; Jetz, W., G. Thomas, J. Joy, K. Hartmann, and A. Mooers. 2012. The global diversity of birds in space and time. Nature 491: 444 – 448.; Kumar, S., G. Stecher, M. Suleski, and S. B. Hedges. 2017. TimeTree: A resource for timelines, timetrees, and divergence times. Molecular Biology and Evolution 34: 1812 – 1819.; Lanfear, R., B. Calcott, S. Y. Ho, and S. Guindon. 2012. PartitionFinder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution 29: 1695 – 1701.; Lavergne, S., N. Mouquet, W. Thuiller, and O. Ronce. 2010. Biodiversity and climate change: Integrating evolutionary and ecological responses of species and communities. Annual Review of Ecology, Evolution, and Systematics 41: 321 – 350.
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9Report
المؤلفون: Yakimov, Basil N., Gerasimova, Alina S., Zhang, Shuang, Ma, Keming, Zhang, Yuxin
مصطلحات موضوعية: Community phylogenetic structure, Diversity, Herbaceous plants, Null-model analysis, Phylogenetic turnover, Woody plants
Relation: ACTA OECOLOGICA-INTERNATIONAL JOURNAL OF ECOLOGY; http://ir.rcees.ac.cn/handle/311016/44407
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10Report
مصطلحات موضوعية: Community assembly mechanism, Community phylogenetic structure, Neutral process, Competitive interaction, Environmental filtering, The middle reaches of the Yangtze river, 群落构建机制, 系统发育群落结构, 中性作用, 竞争作用, 环境过滤, 长江中游
Relation: 水生生物学报; http://ir.ihb.ac.cn/handle/342005/40938
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11
المؤلفون: Tianhua He, Xiuqin Ci, Caiyun Song, Wumei Xu, Wenfu Zhang, Qiao-Ming Li, Jie Li
المصدر: Ecology and Evolution
مصطلحات موضوعية: 0106 biological sciences, 0301 basic medicine, tropical forest, chemistry.chemical_element, Rainforest, Biology, 010603 evolutionary biology, 01 natural sciences, nitrogen, 03 medical and health sciences, community phylogenetic structure, phosphorus, Ecology, Evolution, Behavior and Systematics, Nature and Landscape Conservation, Original Research, Ecology, Phylogenetic tree, species diversity, Phosphorus, Species diversity, Interspecific competition, Spatial heterogeneity, 030104 developmental biology, chemistry, Alpha diversity, heterogeneity, Neutral theory of molecular evolution, human activities
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12
المؤلفون: Eiserhardt, Wolf L., Borchsenius, Finn, Sandel, Brody Steven, Kissling, W. Daniel, Svenning, Jens-Christian
المصدر: Eiserhardt, W L, Borchsenius, F, Sandel, B S, Kissling, W D & Svenning, J-C 2015, ' Late Cenozoic climate and the phylogenetic structure of regional conifer floras world-wide ', Global Ecology and Biogeography, vol. 24, no. 10, pp. 1136-1148 . https://doi.org/10.1111/geb.12350
مصطلحات موضوعية: disequilibrium, Podocarpaceae, gymnosperms, SPECIES RICHNESS, DIVERSITY, Cupressaceae, Pinaceae, EVOLUTIONARY DYNAMICS, palaeoclimate, net relatedness index, community phylogenetic structure, macroecology, PATTERNS, TREES, EXTINCTIONS, BIODIVERSITY, DIVERSIFICATION, COMMUNITY ECOLOGY, ASSEMBLAGES, Araucariaceae
URL الوصول: https://explore.openaire.eu/search/publication?articleId=pure_au_____::08a40c86a50864c62c5724b89ae0f1a2
https://pure.au.dk/portal/da/publications/late-cenozoic-climate-and-the-phylogenetic -structure -of-regional-conifer-floras-worldwide(3090f177-1876-4602-b3c7-a24b4d67f45e).html -
13Academic Journal
المؤلفون: Lanier, Hayley C., Edwards, Danielle L., Knowles, L. Lacey
مصطلحات موضوعية: Arid zone, community phylogenetic structure, IBRA regions, nexus files, species distributions
جغرافية الموضوع: Australia
Time: Miocene, Pliocene, Pleistocene, Recent
Relation: Lanier HC, Edwards DL, Knowles LL (2013) Phylogenetic structure of vertebrate communities across the Australian arid zone. Journal of Biogeography, online in advance of print.; http://hdl.handle.net/10255/dryad.44670
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14Academic Journal
المؤلفون: Merwin, L., He, Tianhua, Lamont, Byron
مصطلحات موضوعية: community phylogenetic structure, Banksia, phylogenetic signal, SWAFR, species coexistence, phenotypic dispersion, habitat specialization
وصف الملف: restricted
Relation: http://hdl.handle.net/20.500.11937/32589
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15
المؤلفون: Lanier, Hayley C., Edwards, Danielle L., Knowles, L. Lacey
مصطلحات موضوعية: Arid zone, Australia, community phylogenetic structure, IBRA regions, nexus files
جغرافية الموضوع: Australia
Time: Miocene, Pliocene, Pleistocene, Recent
Relation: http://hdl.handle.net/10255/dryad.44711
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16
المؤلفون: Lanier, Hayley C., Edwards, Danielle L., Knowles, L. Lacey
مصطلحات موضوعية: Arid zone, Australia, community phylogenetic structure
جغرافية الموضوع: Australia
Time: Miocene, Pliocene, Pleistocene, Recent
Relation: http://hdl.handle.net/10255/dryad.44715
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17
المؤلفون: Lanier, Hayley C., Edwards, Danielle L., Knowles, L. Lacey
مصطلحات موضوعية: Arid zone, Australia, community phylogenetic structure, IBRA regions, species distributions
جغرافية الموضوع: Australia
Time: Miocene, Pliocene, Pleistocene, Recent
Relation: http://hdl.handle.net/10255/dryad.44706
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18
المؤلفون: Lanier, Hayley C., Edwards, Danielle L., Knowles, L. Lacey
مصطلحات موضوعية: Arid zone, Australia, community phylogenetic structure
جغرافية الموضوع: Australia
Time: Miocene, Pliocene, Pleistocene, Recent
Relation: http://hdl.handle.net/10255/dryad.44712
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19
المؤلفون: Lanier, Hayley C., Edwards, Danielle L., Knowles, L. Lacey
مصطلحات موضوعية: Arid zone, Australia, community phylogenetic structure
جغرافية الموضوع: Australia
Time: Miocene, Pliocene, Pleistocene, Recent
Relation: http://hdl.handle.net/10255/dryad.44714
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20
المؤلفون: Lanier, Hayley C., Edwards, Danielle L., Knowles, L. Lacey
مصطلحات موضوعية: Arid zone, Australia, community phylogenetic structure
جغرافية الموضوع: Australia
Time: Miocene, Pliocene, Pleistocene, Recent
Relation: http://hdl.handle.net/10255/dryad.44713