يعرض 1 - 20 نتائج من 54 نتيجة بحث عن '"community phylogenetic structure"', وقت الاستعلام: 0.61s تنقيح النتائج
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    وصف الملف: application/pdf

    Relation: Li, Daijiang; Trotta, Lauren; Marx, Hannah E.; Allen, Julie M.; Sun, Miao; Soltis, Douglas E.; Soltis, Pamela S.; Guralnick, Robert P.; Baiser, Benjamin (2019). "For common community phylogenetic analyses, go ahead and use synthesis phylogenies." Ecology 100(9): n/a-n/a.; https://hdl.handle.net/2027.42/151322; Ecology; Pons, J., T. G. Barraclough, J. Gomez‐Zurita, A. Cardoso, D. P. Duran, S. Hazell, S. Kamoun, W. D. Sumlin, and A. P. Vogler. 2006. Sequence‐based species delimitation for the DNA taxonomy of undescribed insects. Systematic Biology 55: 595 – 609.; Li, D., and D. M. Waller. 2017. Fire exclusion and climate change interact to affect long‐term changes in the functional composition of plant communities. Diversity and Distributions 23: 496 – 506.; Li, D., A. R. Ives, and D. M. Waller. 2017. Can functional traits account for phylogenetic signal in community composition? New Phytologist 214: 607 – 618.; Lozupone, C., and R. Knight. 2005. UniFrac: A new phylogenetic method for comparing microbial communities. Applied and Environmental Microbiology 71: 8228 – 8235.; Maherali, H., and J. N. Klironomos. 2007. Influence of phylogeny on fungal community assembly and ecosystem functioning. Science 316: 1746 – 1748.; Marx, H. E., C. Dentant, J. Renaud, R. Delunel, D. C. Tank, and S. Lavergne. 2017. Riders in the sky (islands): Using a mega‐phylogenetic approach to understand plant species distribution and coexistence at the altitudinal limits of angiosperm plant life. Journal of Biogeography 44: 2618 – 2630.; Miller, E. T., D. R. Farine, and C. H. Trisos. 2017. Phylogenetic community structure metrics and null models: A review with new methods and software. Ecography 40: 461 – 477.; Molina‐Venegas, R., and M. Á. Rodriguez. 2017. Revisiting phylogenetic signal; strong or negligible impacts of polytomies and branch length information? BMC Evolutionary Biology 17: 53.; Münkemüller, T., S. Lavergne, B. Bzeznik, S. Dray, T. Jombart, K. Schiffers, and W. Thuiller. 2012. How to measure and test phylogenetic signal. Methods in Ecology and Evolution 3: 743 – 756.; Pagel, M. 1999. Inferring the historical patterns of biological evolution. Nature 401: 877.; Paradis, E., J. Claude, and K. Strimmer. 2004. APE: Analyses of phylogenetics and evolution in R language. Bioinformatics 20: 289 – 290.; Park, D. S., S. Worthington, and Z. Xi. 2018. Taxon sampling effects on the quantification and comparison of community phylogenetic diversity. Molecular Ecology 27: 1296 – 1308.; Patrick, L. E., and R. D. Stevens. 2014. Investigating sensitivity of phylogenetic community structure metrics using North American desert bats. Journal of Mammalogy 95: 1240 – 1253.; Pearse, W. D., and A. Purvis. 2013. PhyloGenerator: An automated phylogeny generation tool for ecologists. Methods in Ecology and Evolution 4: 692 – 698.; Stamatakis, A. 2014. RAxML version 8: A tool for phylogenetic analysis and post‐analysis of large phylogenies. Bioinformatics 30: 1312 – 1313.; Qian, H., and J. Zhang. 2016. Are phylogenies derived from family‐level supertrees robust for studies on macroecological patterns along environmental gradients? Journal of Systematics and Evolution 54: 29 – 36.; R Core Team. 2017. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. www.r-project.org; Rabosky, D. L., F. Santini, J. Eastman, S. A. Smith, B. Sidlauskas, J. Chang, and M. E. Alfaro. 2013. Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation. Nature Communications 4: 1958.; Ronquist, F., and J. P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572 – 1574.; Smith, M. A., W. Hallwachs, and D. H. Janzen. 2014. Diversity and phylogenetic community structure of ants along a Costa Rican elevational gradient. Ecography 37: 720 – 731.; Smith, S. A., J. M. Beaulieu, and M. J. Donoghue. 2009. Mega‐phylogeny approach for comparative biology: An alternative to supertree and supermatrix approaches. BMC Evolutionary Biology 9: 37.; Smith, S. A., and J. W. Brown. 2018. Constructing a broadly inclusive seed plant phylogeny. American Journal of Botany 105: 302 – 314.; Swenson, N. G. 2009. Phylogenetic resolution and quantifying the phylogenetic diversity and dispersion of communities. PLoS ONE 4: e4390.; Trotta, L., B. Baiser, J. Possley, D. Li, J. Lange, S. Martin, and E. Sessa. 2018. Community phylogeny of the globally critically imperiled pine rockland ecosystem. American Journal of Botany 105: 1735 – 1747.; Tsirogiannis, C., and B. Sandel. 2016. PhyloMeasures: A package for computing phylogenetic biodiversity measures and their statistical moments. Ecography 39: 709 – 714.; Tucker, C. M., M. W. Cadotte, S. B. Carvalho, T. J. Davies, S. Ferrier, S. A. Fritz, R. Grenyer, M. R. Helmus, L. S. Jin, and A. O. Mooers. 2017. A guide to phylogenetic metrics for conservation, community ecology and macroecology. Biological Reviews 92: 698 – 715.; Vamosi, S., S. Heard, J. Vamosi, and C. Webb. 2009. Emerging patterns in the comparative analysis of phylogenetic community structure. Molecular Ecology 18: 572 – 592.; Webb, C. O., D. D. Ackerly, M. A. McPeek, and M. J. Donoghue. 2002. Phylogenies and community ecology. Annual Review of Ecology and Systematics 33: 475 – 505.; Webb, C. O., D. D. Ackerly, and S. W. Kembel. 2008. Phylocom: Software for the analysis of phylogenetic community structure and trait evolution. Bioinformatics 24: 2098 – 2100.; Webb, C. O., and M. J. Donoghue. 2005. Phylomatic: Tree assembly for applied phylogenetics. Molecular Ecology Resources 5: 181 – 183.; Wikström, N., V. Savolainen, and M. W. Chase. 2001. Evolution of the angiosperms: Calibrating the family tree. Proceedings of the Royal Society B 268: 2211 – 2220.; Zanne, A. E., D. C. Tank, W. K. Cornwell, J. M. Eastman, S. A. Smith, R. G. FitzJohn, D. J. McGlinn, B. C. O’Meara, A. T. Moles, and P. B. Reich. 2014. Three keys to the radiation of angiosperms into freezing environments. Nature 506: 89 – 92.; Forest, F., R. Grenyer, M. Rouget, T. J. Davies, R. M. Cowling, D. P. Faith, A. Balmford, J. C. Manning, Ş. Procheş, and M. van der Bank. 2007. Preserving the evolutionary potential of floras in biodiversity hotspots. Nature 445: 757 – 760.; Fritz, S. A., O. R. Bininda‐Emonds, and A. Purvis. 2009. Geographical variation in predictors of mammalian extinction risk: Big is bad, but only in the tropics. Ecology Letters 12: 538 – 549.; Hebert, P. D., E. H. Penton, J. M. Burns, D. H. Janzen, and W. Hallwachs. 2004. Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly astraptes fulgerator. Proceedings of the National Academy of Sciences of the United States of America 101: 14812 – 14817.; Allen, J. M. et al. 2019. Spatial phylogenetics of florida vascular plants: The effects of calibration and uncertainty on diversity estimates. IScience 11: 57 – 70.; Antonelli, A., H. Hettling, F. L. Condamine, K. Vos, R. H. Nilsson, M. J. Sanderson, H. Sauquet, R. Scharn, D. Silvestro, and M. Töpel. 2017. Toward a self‐updating platform for estimating rates of speciation and migration, ages, and relationships of taxa. Systematic Biology 66: 152 – 166.; APG III. 2009. An update of the angiosperm phylogeny group classification for the orders and families of flowering plants: APG III. Botanical Journal of the Linnean Society 161: 105 – 121.; APG IV et al. 2016. An update of the angiosperm phylogeny group classification for the orders and families of flowering plants: APG IV. Botanical Journal of the Linnean Society 181: 1 – 20.; Baum, D. A., and S. D. Smith. 2012. Tree thinking: An introduction to phylogenetic biology. Roberts Co., Greenwood Village, Colorado, USA.; Bininda‐Emonds, O. R., M. Cardillo, K. E. Jones, R. D. MacPhee, R. M. Beck, R. Grenyer, S. A. Price, R. A. Vos, J. L. Gittleman, and A. Purvis. 2007. The delayed rise of present‐day mammals. Nature 446: 507.; Blomberg, S. P., T. Garland, and A. R. Ives. 2003. Testing for phylogenetic signal in comparative data: Behavioral traits are more labile. Evolution 57: 717 – 745.; Boyle, E. E., and S. J. Adamowicz. 2015. Community phylogenetics: Assessing tree reconstruction methods and the utility of DNA barcodes. PLoS ONE 10: e0126662.; Cadotte, M. W. 2015. Phylogenetic diversity–ecosystem function relationships are insensitive to phylogenetic edge lengths. Functional Ecology 29: 718 – 723.; Cardillo, M. 2011. Phylogenetic structure of mammal assemblages at large geographical scales: Linking phylogenetic community ecology with macroecology. Philosophical Transactions of the Royal Society B 366: 2545 – 2553.; Cavender‐Bares, J., and P. B. Reich. 2012. Shocks to the system: Community assembly of the oak savanna in a 40‐year fire frequency experiment. Ecology 93: S52 – S69.; Cavender‐Bares, J., A. Keen, and B. Miles. 2006. Phylogenetic structure of Floridian plant communities depends on taxonomic and spatial scale. Ecology 87: S109 – S122.; Cavender‐Bares, J., K. H. Kozak, P. V. Fine, and S. W. Kembel. 2009. The merging of community ecology and phylogenetic biology. Ecology Letters 12: 693 – 715.; Davies, T. J., N. J. Kraft, N. Salamin, and E. M. Wolkovich. 2012. Incompletely resolved phylogenetic trees inflate estimates of phylogenetic conservatism. Ecology 93: 242 – 247.; Drummond, A. J., and A. Rambaut. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7: 214.; Eastman, J. M., L. J. Harmon, and D. C. Tank. 2013. Congruification: Support for time scaling large phylogenetic trees. Methods in Ecology and Evolution 4: 688 – 691.; Edgar, R. C. 2004. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792 – 1797.; Faith, D. P. 1992. Conservation evaluation and phylogenetic diversity. Biological Conservation 61: 1 – 10.; Helmus, M. R., K. Savage, M. W. Diebel, J. T. Maxted, and A. R. Ives. 2007. Separating the determinants of phylogenetic community structure. Ecology Letters 10: 917 – 925.; Hinchliff, C. E., S. A. Smith, J. F. Allman, J. G. Burleigh, R. Chaudhary, L. M. Coghill, K. A. Crandall, J. Deng, B. T. Drew, and R. Gazis. 2015. Synthesis of phylogeny and taxonomy into a comprehensive tree of life. Proceedings of the National Academy of Sciences 112: 12764 – 12769.; Ives, A. R., and M. R. Helmus. 2010. Phylogenetic metrics of community similarity. American Naturalist 176: E128 – E142.; Jetz, W., G. Thomas, J. Joy, K. Hartmann, and A. Mooers. 2012. The global diversity of birds in space and time. Nature 491: 444 – 448.; Kumar, S., G. Stecher, M. Suleski, and S. B. Hedges. 2017. TimeTree: A resource for timelines, timetrees, and divergence times. Molecular Biology and Evolution 34: 1812 – 1819.; Lanfear, R., B. Calcott, S. Y. Ho, and S. Guindon. 2012. PartitionFinder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution 29: 1695 – 1701.; Lavergne, S., N. Mouquet, W. Thuiller, and O. Ronce. 2010. Biodiversity and climate change: Integrating evolutionary and ecological responses of species and communities. Annual Review of Ecology, Evolution, and Systematics 41: 321 – 350.

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    المصدر: Eiserhardt, W L, Borchsenius, F, Sandel, B S, Kissling, W D & Svenning, J-C 2015, ' Late Cenozoic climate and the phylogenetic structure of regional conifer floras world-wide ', Global Ecology and Biogeography, vol. 24, no. 10, pp. 1136-1148 . https://doi.org/10.1111/geb.12350

    URL الوصول: https://explore.openaire.eu/search/publication?articleId=pure_au_____::08a40c86a50864c62c5724b89ae0f1a2
    https://pure.au.dk/portal/da/publications/late-cenozoic-climate-and-the-phylogenetic-structure-of-regional-conifer-floras-worldwide(3090f177-1876-4602-b3c7-a24b4d67f45e).html

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    جغرافية الموضوع: Australia

    Time: Miocene, Pliocene, Pleistocene, Recent

    Relation: Lanier HC, Edwards DL, Knowles LL (2013) Phylogenetic structure of vertebrate communities across the Australian arid zone. Journal of Biogeography, online in advance of print.; http://hdl.handle.net/10255/dryad.44670

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