المؤلفون: Kathryn M. Barth, David A. Hiller, Scott A. Strobel

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Cell Biology, Genetics, Molecular Biology, Biotechnology, Cancer, Infectious Diseases, Computational Biology, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, throughput mutational analysis, subtle sequence differences, quantitatively assess thousands, common structural motif, chemically similar ligands, predict promiscuous sequences, variant riboswitches utilize, distal nucleotides could, direct ligand contact, impact ligand specificity, variant riboswitch, direct contact, ligand specificity, ligand contact, variants discriminate, terminator helix, single nucleotide, shell nucleotides

Relation: https://figshare.com/articles/journal_contribution/The_Impact_of_Second-Shell_Nucleotides_on_Ligand_Specificity_in_Cyclic_Dinucleotide_Riboswitches/25174887

الاتاحة: https://doi.org/10.1021/acs.biochem.3c00586.s002
https://figshare.com/articles/journal_contribution/The_Impact_of_Second-Shell_Nucleotides_on_Ligand_Specificity_in_Cyclic_Dinucleotide_Riboswitches/25174887

المؤلفون: Vasilina Zayats (138896), Agata P. Perlinska (8893289), Aleksandra I. Jarmolinska (11948108), Borys Jastrzebski (11948111), Stanislaw Dunin-Horkawicz (21359), Joanna I. Sulkowska (580353)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, unknotted monovalent cation, domain membrane transporters, proton antiporters evolved, phylogenetic analysis suggests, unknotted proteins share, unknotted membrane proteins, common structural motif, studied evolved, comprehensive analysis, %22">xlink ">, slipknot motif, several families, sequential level, results suggest, evolutionary origin, current diversity, allows us

Relation: https://figshare.com/articles/journal_contribution/Methods_/18394142

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009502.s012

المؤلفون: Yangyang Shen (1939252), Tomislav Rovis (1308306)

مصطلحات موضوعية: Biochemistry, Sociology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, photoredox dual catalysis, pharmaceutical compounds bearing, mechanistic studies indicate, complex amine architectures, common structural motif, amino radical undergoes, amino radicals, wide range, wide availability, unconventional behavior, successful cross, rapid construction, n <, mild conditions, ideal sources, coupling process

Relation: https://figshare.com/articles/journal_contribution/Late-Stage_i_N_i_Me_Selective_Arylation_of_Trialkylamines_Enabled_by_Ni_Photoredox_Dual_Catalysis/16709291

الاتاحة: https://doi.org/10.1021/jacs.1c08157.s001

المؤلفون: Wilson, Keith S., Appelt, Krzysztof, Badger, John, Tanaka, Isao, White, Stephen W.

المصدر: Proceedings of the National Academy of Sciences of the United States of America, 1986 Oct 01. 83(19), 7251-7255.

URL الوصول: https://www.jstor.org/stable/28448

المؤلفون: Vasilina Zayats (138896), Agata P. Perlinska (8893289), Aleksandra I. Jarmolinska (11948108), Borys Jastrzebski (11948111), Stanislaw Dunin-Horkawicz (21359), Joanna I. Sulkowska (580353)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, unknotted monovalent cation, domain membrane transporters, proton antiporters evolved, phylogenetic analysis suggests, unknotted proteins share, unknotted membrane proteins, common structural motif, studied evolved, comprehensive analysis, %22">xlink ">, slipknot motif, several families, sequential level, results suggest, evolutionary origin, current diversity, allows us

Relation: https://figshare.com/articles/figure/Sequence_logos_of_both_slipknotted_and_unknotted_protein_families_/18394109

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009502.s001

المؤلفون: Vasilina Zayats (138896), Agata P. Perlinska (8893289), Aleksandra I. Jarmolinska (11948108), Borys Jastrzebski (11948111), Stanislaw Dunin-Horkawicz (21359), Joanna I. Sulkowska (580353)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, unknotted monovalent cation, domain membrane transporters, proton antiporters evolved, phylogenetic analysis suggests, unknotted proteins share, unknotted membrane proteins, common structural motif, studied evolved, comprehensive analysis, %22">xlink ">, slipknot motif, several families, sequential level, results suggest, evolutionary origin, current diversity, allows us

Relation: https://figshare.com/articles/figure/The_linkers_connecting_two_domains_in_slipknotted_and_unknotted_structures_/18394112

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009502.s002

المؤلفون: Vasilina Zayats (138896), Agata P. Perlinska (8893289), Aleksandra I. Jarmolinska (11948108), Borys Jastrzebski (11948111), Stanislaw Dunin-Horkawicz (21359), Joanna I. Sulkowska (580353)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, unknotted monovalent cation, domain membrane transporters, proton antiporters evolved, phylogenetic analysis suggests, unknotted proteins share, unknotted membrane proteins, common structural motif, studied evolved, comprehensive analysis, %22">xlink ">, slipknot motif, several families, sequential level, results suggest, evolutionary origin, current diversity, allows us

Relation: https://figshare.com/articles/figure/Comparison_of_unaligned_full-length_sequences_in_CLANS_/18394136

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009502.s010

المؤلفون: Vasilina Zayats (138896), Agata P. Perlinska (8893289), Aleksandra I. Jarmolinska (11948108), Borys Jastrzebski (11948111), Stanislaw Dunin-Horkawicz (21359), Joanna I. Sulkowska (580353)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, unknotted monovalent cation, domain membrane transporters, proton antiporters evolved, phylogenetic analysis suggests, unknotted proteins share, unknotted membrane proteins, common structural motif, studied evolved, comprehensive analysis, %22">xlink ">, slipknot motif, several families, sequential level, results suggest, evolutionary origin, current diversity, allows us

Relation: https://figshare.com/articles/figure/Profile-profile_comparison_of_the_domains_/18394115

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009502.s003

المؤلفون: Vasilina Zayats (138896), Agata P. Perlinska (8893289), Aleksandra I. Jarmolinska (11948108), Borys Jastrzebski (11948111), Stanislaw Dunin-Horkawicz (21359), Joanna I. Sulkowska (580353)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, unknotted monovalent cation, domain membrane transporters, proton antiporters evolved, phylogenetic analysis suggests, unknotted proteins share, unknotted membrane proteins, common structural motif, studied evolved, comprehensive analysis, %22">xlink ">, slipknot motif, several families, sequential level, results suggest, evolutionary origin, current diversity, allows us

Relation: https://figshare.com/articles/figure/Multiple_sequence_alignment_of_the_domains_profiles_/18394118

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009502.s004

المؤلفون: Vasilina Zayats (138896), Agata P. Perlinska (8893289), Aleksandra I. Jarmolinska (11948108), Borys Jastrzebski (11948111), Stanislaw Dunin-Horkawicz (21359), Joanna I. Sulkowska (580353)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, unknotted monovalent cation, domain membrane transporters, proton antiporters evolved, phylogenetic analysis suggests, unknotted proteins share, unknotted membrane proteins, common structural motif, studied evolved, comprehensive analysis, %22">xlink ">, slipknot motif, several families, sequential level, results suggest, evolutionary origin, current diversity, allows us

Relation: https://figshare.com/articles/figure/Parsimony_phylogenetic_tree_/18394130

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009502.s008

المؤلفون: Vasilina Zayats (138896), Agata P. Perlinska (8893289), Aleksandra I. Jarmolinska (11948108), Borys Jastrzebski (11948111), Stanislaw Dunin-Horkawicz (21359), Joanna I. Sulkowska (580353)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, unknotted monovalent cation, domain membrane transporters, proton antiporters evolved, phylogenetic analysis suggests, unknotted proteins share, unknotted membrane proteins, common structural motif, studied evolved, comprehensive analysis, %22">xlink ">, slipknot motif, several families, sequential level, results suggest, evolutionary origin, current diversity, allows us

Relation: https://figshare.com/articles/figure/Bayesian_phylogenetic_tree_4_/18394127

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009502.s007

المؤلفون: Vasilina Zayats (138896), Agata P. Perlinska (8893289), Aleksandra I. Jarmolinska (11948108), Borys Jastrzebski (11948111), Stanislaw Dunin-Horkawicz (21359), Joanna I. Sulkowska (580353)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, unknotted monovalent cation, domain membrane transporters, proton antiporters evolved, phylogenetic analysis suggests, unknotted proteins share, unknotted membrane proteins, common structural motif, studied evolved, comprehensive analysis, %22">xlink ">, slipknot motif, several families, sequential level, results suggest, evolutionary origin, current diversity, allows us

Relation: https://figshare.com/articles/figure/Bayesian_phylogenetic_tree_3_/18394124

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009502.s006

المؤلفون: Vasilina Zayats (138896), Agata P. Perlinska (8893289), Aleksandra I. Jarmolinska (11948108), Borys Jastrzebski (11948111), Stanislaw Dunin-Horkawicz (21359), Joanna I. Sulkowska (580353)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, unknotted monovalent cation, domain membrane transporters, proton antiporters evolved, phylogenetic analysis suggests, unknotted proteins share, unknotted membrane proteins, common structural motif, studied evolved, comprehensive analysis, %22">xlink ">, slipknot motif, several families, sequential level, results suggest, evolutionary origin, current diversity, allows us

Relation: https://figshare.com/articles/figure/Projection_of_the_phylogenetic_tree_of_all_17_families_studied_here_on_the_Tree_of_Life_/18394133

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009502.s009

المؤلفون: Vasilina Zayats (138896), Agata P. Perlinska (8893289), Aleksandra I. Jarmolinska (11948108), Borys Jastrzebski (11948111), Stanislaw Dunin-Horkawicz (21359), Joanna I. Sulkowska (580353)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, unknotted monovalent cation, domain membrane transporters, proton antiporters evolved, phylogenetic analysis suggests, unknotted proteins share, unknotted membrane proteins, common structural motif, studied evolved, comprehensive analysis, %22">xlink ">, slipknot motif, several families, sequential level, results suggest, evolutionary origin, current diversity, allows us

Relation: https://figshare.com/articles/dataset/Multiple_sequence_alignment_of_domain_sequences_/18394145

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009502.s013

المؤلفون: Vasilina Zayats (138896), Agata P. Perlinska (8893289), Aleksandra I. Jarmolinska (11948108), Borys Jastrzebski (11948111), Stanislaw Dunin-Horkawicz (21359), Joanna I. Sulkowska (580353)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, unknotted monovalent cation, domain membrane transporters, proton antiporters evolved, phylogenetic analysis suggests, unknotted proteins share, unknotted membrane proteins, common structural motif, studied evolved, comprehensive analysis, %22">xlink ">, slipknot motif, several families, sequential level, results suggest, evolutionary origin, current diversity, allows us

Relation: https://figshare.com/articles/dataset/Output_from_clustering_of_the_domain_sequences_/18394148

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009502.s014

المؤلفون: Vasilina Zayats (138896), Agata P. Perlinska (8893289), Aleksandra I. Jarmolinska (11948108), Borys Jastrzebski (11948111), Stanislaw Dunin-Horkawicz (21359), Joanna I. Sulkowska (580353)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, unknotted monovalent cation, domain membrane transporters, proton antiporters evolved, phylogenetic analysis suggests, unknotted proteins share, unknotted membrane proteins, common structural motif, studied evolved, comprehensive analysis, %22">xlink ">, slipknot motif, several families, sequential level, results suggest, evolutionary origin, current diversity, allows us

Relation: https://figshare.com/articles/figure/Schematic_representation_of_the_knotted_A_and_slipknotted_B_chains_/18394154

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009502.g001

المؤلفون: Vasilina Zayats (138896), Agata P. Perlinska (8893289), Aleksandra I. Jarmolinska (11948108), Borys Jastrzebski (11948111), Stanislaw Dunin-Horkawicz (21359), Joanna I. Sulkowska (580353)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, unknotted monovalent cation, domain membrane transporters, proton antiporters evolved, phylogenetic analysis suggests, unknotted proteins share, unknotted membrane proteins, common structural motif, studied evolved, comprehensive analysis, %22">xlink ">, slipknot motif, several families, sequential level, results suggest, evolutionary origin, current diversity, allows us

Relation: https://figshare.com/articles/dataset/Phylogenetic_tree_from_MrBayes_/18394151

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009502.s015

المؤلفون: Vasilina Zayats (138896), Agata P. Perlinska (8893289), Aleksandra I. Jarmolinska (11948108), Borys Jastrzebski (11948111), Stanislaw Dunin-Horkawicz (21359), Joanna I. Sulkowska (580353)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, unknotted monovalent cation, domain membrane transporters, proton antiporters evolved, phylogenetic analysis suggests, unknotted proteins share, unknotted membrane proteins, common structural motif, studied evolved, comprehensive analysis, %22">xlink ">, slipknot motif, several families, sequential level, results suggest, evolutionary origin, current diversity, allows us

Relation: https://figshare.com/articles/figure/Identified_structural_differences_between_the_slipknotted_and_unknotted_proteins_/18394163

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009502.g004

المؤلفون: Vasilina Zayats (138896), Agata P. Perlinska (8893289), Aleksandra I. Jarmolinska (11948108), Borys Jastrzebski (11948111), Stanislaw Dunin-Horkawicz (21359), Joanna I. Sulkowska (580353)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, unknotted monovalent cation, domain membrane transporters, proton antiporters evolved, phylogenetic analysis suggests, unknotted proteins share, unknotted membrane proteins, common structural motif, studied evolved, comprehensive analysis, %22">xlink ">, slipknot motif, several families, sequential level, results suggest, evolutionary origin, current diversity, allows us

Relation: https://figshare.com/articles/figure/Conserved_helical_region_core_found_in_the_monovalent_cation-proton_antiporter_superfamily_/18394157

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009502.g002

المؤلفون: Vasilina Zayats (138896), Agata P. Perlinska (8893289), Aleksandra I. Jarmolinska (11948108), Borys Jastrzebski (11948111), Stanislaw Dunin-Horkawicz (21359), Joanna I. Sulkowska (580353)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, unknotted monovalent cation, domain membrane transporters, proton antiporters evolved, phylogenetic analysis suggests, unknotted proteins share, unknotted membrane proteins, common structural motif, studied evolved, comprehensive analysis, %22">xlink ">, slipknot motif, several families, sequential level, results suggest, evolutionary origin, current diversity, allows us

Relation: https://figshare.com/articles/figure/Sequence_and_phylogenetic_analysis_of_the_domains_suggests_a_common_evolutionary_origin_/18394166

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009502.g005