المؤلفون: Aaron L. Phillips, Scott Ferguson, Rachel A. Burton, Nathan S. Watson-Haigh

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Plant Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, inadequate error reporting, field settings alike, dna sequencing becomes, div >< p, complex installation steps, collecting vast swathes, automated snakemake workflow, additional resource useful, use snakemake tool, specific use cases, several tools exist, crop improvement studies, read sequencing data, tissue read libraries, read second generation, assemble chloroplast genomes, genome sequence data, chloroplast genome assembly, read data, read libraries, chloroplast genomes, make use, chloroplast genome

Relation: https://figshare.com/articles/journal_contribution/Supplementary_Alignments_/25199006

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011870.s001
https://figshare.com/articles/journal_contribution/Supplementary_Alignments_/25199006

المؤلفون: Aaron L. Phillips, Scott Ferguson, Rachel A. Burton, Nathan S. Watson-Haigh

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Plant Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, inadequate error reporting, field settings alike, dna sequencing becomes, div >< p, complex installation steps, collecting vast swathes, automated snakemake workflow, additional resource useful, use snakemake tool, specific use cases, several tools exist, crop improvement studies, read sequencing data, tissue read libraries, read second generation, assemble chloroplast genomes, genome sequence data, chloroplast genome assembly, read data, read libraries, chloroplast genomes, make use, chloroplast genome

Relation: https://figshare.com/articles/journal_contribution/Information_on_ONT_long_reads_used_as_input_for_i_CLAW_i_and_the_Unicycler-generated_chloroplast_genome_assembly_statistics_/25199009

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011870.s002
https://figshare.com/articles/journal_contribution/Information_on_ONT_long_reads_used_as_input_for_i_CLAW_i_and_the_Unicycler-generated_chloroplast_genome_assembly_statistics_/25199009

المؤلفون: Aaron L. Phillips, Scott Ferguson, Rachel A. Burton, Nathan S. Watson-Haigh

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Plant Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, inadequate error reporting, field settings alike, dna sequencing becomes, div >< p, complex installation steps, collecting vast swathes, automated snakemake workflow, additional resource useful, use snakemake tool, specific use cases, several tools exist, crop improvement studies, read sequencing data, tissue read libraries, read second generation, assemble chloroplast genomes, genome sequence data, chloroplast genome assembly, read data, read libraries, chloroplast genomes, make use, chloroplast genome

Relation: https://figshare.com/articles/journal_contribution/Information_on_PacBio_long_reads_used_as_input_for_i_CLAW_i_and_the_Flye-generated_chloroplast_genome_assembly_statistics_/25199012

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011870.s003
https://figshare.com/articles/journal_contribution/Information_on_PacBio_long_reads_used_as_input_for_i_CLAW_i_and_the_Flye-generated_chloroplast_genome_assembly_statistics_/25199012

المؤلفون: Aaron L. Phillips, Scott Ferguson, Rachel A. Burton, Nathan S. Watson-Haigh

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Plant Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, inadequate error reporting, field settings alike, dna sequencing becomes, div >< p, complex installation steps, collecting vast swathes, automated snakemake workflow, additional resource useful, use snakemake tool, specific use cases, several tools exist, crop improvement studies, read sequencing data, tissue read libraries, read second generation, assemble chloroplast genomes, genome sequence data, chloroplast genome assembly, read data, read libraries, chloroplast genomes, make use, chloroplast genome

Relation: https://figshare.com/articles/journal_contribution/Information_on_PacBio_long_reads_used_as_input_for_i_CLAW_i_and_the_Unicycler-generated_chloroplast_genome_assembly_statistics_/25199015

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011870.s004
https://figshare.com/articles/journal_contribution/Information_on_PacBio_long_reads_used_as_input_for_i_CLAW_i_and_the_Unicycler-generated_chloroplast_genome_assembly_statistics_/25199015

المؤلفون: Albediwi, Albatool Suliman, Ali, Mohammad Ajmal, Alwahibi, Mona Solaiman, Ahmed, Sheikh Sunzid, Rahman, M Oliur, Kim, Soo Yong, Elshikh, Mohamed S, Alsuhaimi, Nadia Mohammad

المصدر: Bangladesh Journal of Plant Taxonomy; Vol. 31 No. 1 (2024); 1-14 ; 2224-7297 ; 1028-2092

مصطلحات موضوعية: Chloroplast genome assembly, Tribulus macropterus var. arabicus, Simple sequence repeats, Nucleotide diversity, Phylogenetics, Zygophyllaceae

جغرافية الموضوع: Saudi Arabia, Republic of Korea

وصف الملف: application/pdf

Relation: https://www.banglajol.info/index.php/BJPT/article/view/74370/49095; https://www.banglajol.info/index.php/BJPT/article/view/74370

الاتاحة: https://www.banglajol.info/index.php/BJPT/article/view/74370

المؤلفون: Hyunjin Koo, Ah-Young Shin, Seongmin Hong, Yong-Min Kim

المصدر: Frontiers in Plant Science, Vol 14 (2023)

مصطلحات موضوعية: long-read sequencing platform, complete chloroplast genome assembly, Hibiscus syriacus, comparative analysis, Hibisceae, Plant culture, SB1-1110

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2023.1111968/full; https://doaj.org/toc/1664-462X

URL الوصول: https://doaj.org/article/26692a7b540a4fb296357dc4231572f8

المؤلفون: Yanhong Song, Chaochao Li, Lifeng Liu, Panpan Hu, Gang Li, Xia Zhao, Houcheng Zhou

المصدر: Frontiers in Plant Science, Vol 13 (2023)

مصطلحات موضوعية: Fragaria, chloroplast genome assembly, population structure, diversity, evolutionary, Plant culture, SB1-1110

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2022.1065218/full; https://doaj.org/toc/1664-462X

URL الوصول: https://doaj.org/article/e170457520dd4f34993c2c8f3c32e73b

المؤلفون: Aaron L. Phillips, Scott Ferguson, Rachel A. Burton, Nathan S. Watson-Haigh

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Plant Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, inadequate error reporting, field settings alike, dna sequencing becomes, div >< p, complex installation steps, collecting vast swathes, automated snakemake workflow, additional resource useful, use snakemake tool, specific use cases, several tools exist, crop improvement studies, read sequencing data, tissue read libraries, read second generation, assemble chloroplast genomes, genome sequence data, chloroplast genome assembly, read data, read libraries, chloroplast genomes, make use, chloroplast genome

Relation: https://figshare.com/articles/figure/Repeat_graphs_for_the_19_chloroplast_genomes_4_algal_species_4_monocot_species_and_11_eudicot_species_assembled_by_i_CLAW_i_using_ONT_long_reads_as_input_for_i_Flye_i_/25199036

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011870.g004
https://figshare.com/articles/figure/Repeat_graphs_for_the_19_chloroplast_genomes_4_algal_species_4_monocot_species_and_11_eudicot_species_assembled_by_i_CLAW_i_using_ONT_long_reads_as_input_for_i_Flye_i_/25199036

المؤلفون: Aaron L. Phillips, Scott Ferguson, Rachel A. Burton, Nathan S. Watson-Haigh

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Plant Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, inadequate error reporting, field settings alike, dna sequencing becomes, div >< p, complex installation steps, collecting vast swathes, automated snakemake workflow, additional resource useful, use snakemake tool, specific use cases, several tools exist, crop improvement studies, read sequencing data, tissue read libraries, read second generation, assemble chloroplast genomes, genome sequence data, chloroplast genome assembly, read data, read libraries, chloroplast genomes, make use, chloroplast genome

Relation: https://figshare.com/articles/figure/Neighbour-Joining_tree_of_RbcL_gene_sequences_extracted_from_reference_chloroplast_genome_assemblies_and_those_assembled_by_i_CLAW_i_/25199018

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011870.s005
https://figshare.com/articles/figure/Neighbour-Joining_tree_of_RbcL_gene_sequences_extracted_from_reference_chloroplast_genome_assemblies_and_those_assembled_by_i_CLAW_i_/25199018

المؤلفون: Aaron L. Phillips, Scott Ferguson, Rachel A. Burton, Nathan S. Watson-Haigh

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Plant Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, inadequate error reporting, field settings alike, dna sequencing becomes, div >< p, complex installation steps, collecting vast swathes, automated snakemake workflow, additional resource useful, use snakemake tool, specific use cases, several tools exist, crop improvement studies, read sequencing data, tissue read libraries, read second generation, assemble chloroplast genomes, genome sequence data, chloroplast genome assembly, read data, read libraries, chloroplast genomes, make use, chloroplast genome

Relation: https://figshare.com/articles/figure/Graphical_representation_of_the_i_CLAW_i_workflow_/25199021

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011870.g001
https://figshare.com/articles/figure/Graphical_representation_of_the_i_CLAW_i_workflow_/25199021

المؤلفون: Aaron L. Phillips, Scott Ferguson, Rachel A. Burton, Nathan S. Watson-Haigh

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Plant Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, inadequate error reporting, field settings alike, dna sequencing becomes, div >< p, complex installation steps, collecting vast swathes, automated snakemake workflow, additional resource useful, use snakemake tool, specific use cases, several tools exist, crop improvement studies, read sequencing data, tissue read libraries, read second generation, assemble chloroplast genomes, genome sequence data, chloroplast genome assembly, read data, read libraries, chloroplast genomes, make use, chloroplast genome

Relation: https://figshare.com/articles/figure/Demonstration_of_circularising_i_in_silico_i_linear_reference_chloroplast_genome_sequences_after_download_from_online_databases_/25199030

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011870.g002
https://figshare.com/articles/figure/Demonstration_of_circularising_i_in_silico_i_linear_reference_chloroplast_genome_sequences_after_download_from_online_databases_/25199030

المؤلفون: Aaron L. Phillips, Scott Ferguson, Rachel A. Burton, Nathan S. Watson-Haigh

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Plant Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, inadequate error reporting, field settings alike, dna sequencing becomes, div >< p, complex installation steps, collecting vast swathes, automated snakemake workflow, additional resource useful, use snakemake tool, specific use cases, several tools exist, crop improvement studies, read sequencing data, tissue read libraries, read second generation, assemble chloroplast genomes, genome sequence data, chloroplast genome assembly, read data, read libraries, chloroplast genomes, make use, chloroplast genome

Relation: https://figshare.com/articles/dataset/Information_on_ONT_longreads_used_as_input_for_i_CLAW_i_and_the_i_Flye-_i_generated_chloroplast_genome_assembly_statistics_/25199039

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011870.t001
https://figshare.com/articles/dataset/Information_on_ONT_longreads_used_as_input_for_i_CLAW_i_and_the_i_Flye-_i_generated_chloroplast_genome_assembly_statistics_/25199039

المؤلفون: Aaron L. Phillips, Scott Ferguson, Rachel A. Burton, Nathan S. Watson-Haigh

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Plant Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, inadequate error reporting, field settings alike, dna sequencing becomes, div >< p, complex installation steps, collecting vast swathes, automated snakemake workflow, additional resource useful, use snakemake tool, specific use cases, several tools exist, crop improvement studies, read sequencing data, tissue read libraries, read second generation, assemble chloroplast genomes, genome sequence data, chloroplast genome assembly, read data, read libraries, chloroplast genomes, make use, chloroplast genome

Relation: https://figshare.com/articles/figure/Fig_3_-/25199033

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011870.g003
https://figshare.com/articles/figure/Fig_3_-/25199033

المؤلفون: Aaron L. Phillips, Scott Ferguson, Rachel A. Burton, Nathan S. Watson-Haigh

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Plant Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, inadequate error reporting, field settings alike, dna sequencing becomes, div >< p, complex installation steps, collecting vast swathes, automated snakemake workflow, additional resource useful, use snakemake tool, specific use cases, several tools exist, crop improvement studies, read sequencing data, tissue read libraries, read second generation, assemble chloroplast genomes, genome sequence data, chloroplast genome assembly, read data, read libraries, chloroplast genomes, make use, chloroplast genome

Relation: https://figshare.com/articles/dataset/Mean_SE_time_to_completion_RAM_used_percent_identity_to_the_reference_genomes_and_number_of_contigs_generated_by_i_CLAW_i_following_the_i_Flye_i_and_i_Unicycler_i_workflows_with_ONT_or_PacBio_data_as_input_/25199042

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011870.t002
https://figshare.com/articles/dataset/Mean_SE_time_to_completion_RAM_used_percent_identity_to_the_reference_genomes_and_number_of_contigs_generated_by_i_CLAW_i_following_the_i_Flye_i_and_i_Unicycler_i_workflows_with_ONT_or_PacBio_data_as_input_/25199042

المؤلفون: Galaihalage Ananda, Roslyn Gleadow, Sally Norton, Agnelo Furtado, Robert Henry

المصدر: Proceedings, Vol 36, Iss 1, p 17 (2019)

مصطلحات موضوعية: sorghum, crop wild relatives, phylogenetic relationships, chloroplast genome assembly, General Works

Relation: https://www.mdpi.com/2504-3900/36/1/17; https://doaj.org/toc/2504-3900; https://doaj.org/article/bebd8bf12733494d81dbf55f0237ec05

الاتاحة: https://doi.org/10.3390/proceedings2019036017
https://doaj.org/article/bebd8bf12733494d81dbf55f0237ec05

المؤلفون: Hyunjin Koo, Ah-Young Shin, Seongmin Hong, Yong-Min Kim

مصطلحات موضوعية: Botany, Plant Biology, Plant Systematics and Taxonomy, Plant Cell and Molecular Biology, Plant Developmental and Reproductive Biology, Plant Pathology, Plant Physiology, Plant Biology not elsewhere classified, long-read sequencing platform, complete chloroplast genome assembly, Hibiscus syriacus, comparative analysis, Hibisceae

Relation: https://figshare.com/articles/dataset/DataSheet_1_The_complete_chloroplast_genome_of_Hibiscus_syriacus_using_long-read_sequencing_Comparative_analysis_to_examine_the_evolution_of_the_tribe_Hibisceae_docx/21993476

الاتاحة: https://doi.org/10.3389/fpls.2023.1111968.s001
https://figshare.com/articles/dataset/DataSheet_1_The_complete_chloroplast_genome_of_Hibiscus_syriacus_using_long-read_sequencing_Comparative_analysis_to_examine_the_evolution_of_the_tribe_Hibisceae_docx/21993476

المؤلفون: Yanhong Song, Chaochao Li, Lifeng Liu, Panpan Hu, Gang Li, Xia Zhao, Houcheng Zhou

مصطلحات موضوعية: Botany, Plant Biology, Plant Systematics and Taxonomy, Plant Cell and Molecular Biology, Plant Developmental and Reproductive Biology, Plant Pathology, Plant Physiology, Plant Biology not elsewhere classified, Fragaria, chloroplast genome assembly, population structure, diversity, evolutionary

Relation: https://figshare.com/articles/figure/Image_6_The_population_genomic_analyses_of_chloroplast_genomes_shed_new_insights_on_the_complicated_ploidy_and_evolutionary_history_in_Fragaria_pdf/22098914

الاتاحة: https://doi.org/10.3389/fpls.2022.1065218.s006
https://figshare.com/articles/figure/Image_6_The_population_genomic_analyses_of_chloroplast_genomes_shed_new_insights_on_the_complicated_ploidy_and_evolutionary_history_in_Fragaria_pdf/22098914

المؤلفون: R. B. McQualter, Robert J Henry, Agnelo Furtado, Nam V. Hoang

المصدر: New Negatives in Plant Science. :33-45

مصطلحات موضوعية: Whole genome sequencing, Genetics, Chloroplast genome assembly, food and beverages, Plant Science, Sugarcane, Biology, Biochemistry, Genome, DNA sequencing, Heteroplasmy, Chloroplast, Chloroplast DNA, Chloroplast heteroplasmy, Chloroplast variants, Sequencing, Primer (molecular biology), Gene transfer, Molecular Biology, Gene

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d9233ef6f0ca9802fd1b72ac1501b36a

المؤلفون: Hoang, Nam V., Furtado, Agnelo, McQualter, Richard B., Henry, Robert J.

مصطلحات موضوعية: Chloroplast genome assembly, Chloroplast heteroplasmy, Chloroplast variants, Gene transfer, Sequencing, Sugarcane

Relation: orcid:0000-0001-6130-9026; orcid:0000-0002-1341-7871; orcid:0000-0002-4060-0292

الاتاحة: https://espace.library.uq.edu.au/view/UQ:381218

المؤلفون: Vorontsova, Maria S., Ralimanana, Hélène, Besnard, Guillaume, Malé, Pierre-Jean G., Coissac, Eric, Christin, Pascal-Antoine

مصطلحات موضوعية: Single-copy gene, PACMAD clade, Endemic, Chloroplast genome assembly, Biodiversity conservation, NGS, Lecomtella madagascariensis, Madagacar, Andringitra, Grass phylogenetics

Relation: Annals of Botany; https://doi.org/10.1093/aob/mct174

الاتاحة: https://doi.org/10.1093/aob/mct174