المؤلفون: McDaniel, Elizabeth A., Wahl, Sebastian Aljoscha, Ishii, Shun'ichi, Pinto, Ameet, Ziels, Ryan, Nielsen, Per H., McMahon, Katherine D., Williams, Rohan B. H.

مصطلحات موضوعية: Quantitative Biology - Genomics

URL الوصول: http://arxiv.org/abs/2105.08856

المؤلفون: Strutt, James P. B., Natarajan, Meenubharathi, Lee, Elizabeth, Teo, Denise Bei Lin, Sin, Wei-Xiang, Cheung, Ka-Wai, Chew, Marvin, Thazin, Khaing, Barone, Paul W., Wolfrum, Jacqueline M., Williams, Rohan B. H., Rice, Scott A., Springs, Stacy L.

المساهمون: Singapore-MIT Alliance for Research and Technology, Singapore Centre for Environmental Life Sciences and Engineering

مصطلحات موضوعية: Medicine, Health and Life Sciences, Adventitious agents, Machine learning

وصف الملف: application/pdf

Relation: Microbiology Spectrum; Strutt, J. P. B., Natarajan, M., Lee, E., Teo, D. B. L., Sin, W., Cheung, K., Chew, M., Thazin, K., Barone, P. W., Wolfrum, J. M., Williams, R. B. H., Rice, S. A. & Springs, S. L. (2023). Machine learning-based detection of adventitious microbes in T-cell therapy cultures using long-read sequencing. Microbiology Spectrum, 11(5), e0135023-. https://dx.doi.org/10.1128/spectrum.01350-23; https://hdl.handle.net/10356/173925; 2-s2.0-85175792876; 11; e0135023

الاتاحة: https://hdl.handle.net/10356/173925
https://doi.org/10.1128/spectrum.01350-23

المؤلفون: Lu, Yang, Natarajan, Gayathri, Nguyen, Thi Quynh Ngoc, Thi, Sara Swa, Arumugam, Krithika, Seviour, Thomas, Williams, Rohan B. H., Wuertz, Stefan, Law, Yingyu

المساهمون: School of Civil and Environmental Engineering, Singapore Centre for Environmental Life Sciences and Engineering (SCELSE)

مصطلحات موضوعية: Engineering::Environmental engineering::Water treatment, Ammonium Compounds, Anaerobic Ammonia Oxidation

وصف الملف: application/pdf

Relation: 1301-IRIS-59; Scientific Reports; Lu, Y., Natarajan, G., Nguyen, T. Q. N., Thi, S. S., Arumugam, K., Seviour, T., Williams, R. B. H., Wuertz, S. & Law, Y. (2022). Controlling anammox speciation and biofilm attachment strategy using N-biotransformation intermediates and organic carbon levels. Scientific Reports, 12(1), 21720-. https://dx.doi.org/10.1038/s41598-022-26069-2; https://hdl.handle.net/10356/171298; 2-s2.0-85144107492; 12; 21720

الاتاحة: https://hdl.handle.net/10356/171298
https://doi.org/10.1038/s41598-022-26069-2

المؤلفون: Tong, Louis, Constancias, Florentin, Hou, Aihua, Chua, Song Lin, Drautz-Moses, Daniela Isabel, Schuster, Stephan Christoph, Yang, Liang, Williams, Rohan B. H., Kjelleberg, Staffan

المساهمون: Lee Kong Chian School of Medicine (LKCMedicine), School of Biological Sciences, Life Sciences Institute, NUS, Singapore Centre for Environmental Life Sciences and Engineering (SCELSE)

مصطلحات موضوعية: Science::Medicine, Human Microbiome, Inflammation

وصف الملف: application/pdf

Relation: NMRC/CSA/045/2012; NMRC/CSA-SI/0017/2017; Frontiers in Medicine; Tong, L., Constancias, F., Hou, A., Chua, S. L., Drautz-Moses, D. I., Schuster, S. C., Yang, L., Williams, R. B. H. & Kjelleberg, S. (2022). Shotgun metagenomic sequencing analysis of ocular surface microbiome in Singapore residents with mild dry eye. Frontiers in Medicine, 9, 1034131-. https://dx.doi.org/10.3389/fmed.2022.1034131; https://hdl.handle.net/10356/164505; 2-s2.0-85142642341; 1034131

الاتاحة: https://hdl.handle.net/10356/164505
https://doi.org/10.3389/fmed.2022.1034131

المؤلفون: Bessarab, Irina, Maszenan, Abdul Majid, Haryono, Mindia A. S., Arumugam, Krithika, Saw, Nay Min Min Thaw, Seviour, Robert J., Williams, Rohan B. H.

المساهمون: National University of Singapore, Nanyang Environment and Water Research Institute, Singapore Centre for Environmental Life Sciences and Engineering (SCELSE)

مصطلحات موضوعية: Engineering::Environmental engineering, Activated Sludge, Glycogen Accumulating Organisms

وصف الملف: application/pdf

Relation: Frontiers in Microbiology; Bessarab, I., Maszenan, A. M., Haryono, M. A. S., Arumugam, K., Saw, N. M. M. T., Seviour, R. J. & Williams, R. B. H. (2022). Comparative genomics of members of the genus Defluviicoccus with insights into their ecophysiological importance. Frontiers in Microbiology, 13, 834906-. https://dx.doi.org/10.3389/fmicb.2022.834906; https://hdl.handle.net/10356/163268; 2-s2.0-85128920348; 13; 834906

الاتاحة: https://hdl.handle.net/10356/163268
https://doi.org/10.3389/fmicb.2022.834906

المؤلفون: Haryono, Mindia A. S., Law, Ying Yu, Arumugam, Krithika, Liew, Larry C. -W., Nguyen, Thi Quynh Ngoc, Drautz-Moses, Daniela I., Schuster, Stephan C., Wuertz, Stefan, Williams, Rohan B. H.

المساهمون: National Research Foundation Singapore

المصدر: Frontiers in Microbiology ; volume 13 ; ISSN 1664-302X

الاتاحة: http://dx.doi.org/10.3389/fmicb.2022.869135
https://www.frontiersin.org/articles/10.3389/fmicb.2022.869135/full

المؤلفون: Haryono, Mindia A. S., Arumugam, Krithika, Williams, Rohan B. H.

مصطلحات موضوعية: metagenome, MAGs catalogue, time-series, activated sludge, full-scale waste water treatment, co-assembly, metagenome assembly

Relation: https://doi.org/10.1101/2021.08.21.456929; https://doi.org/10.5281/zenodo.5215737; https://doi.org/10.5281/zenodo.5215738; oai:zenodo.org:5215738

الاتاحة: https://doi.org/10.5281/zenodo.5215738

المؤلفون: Suriyaphol, Prapat, Chiu, Jimmy Ka Ho, Yimpring, Nathamon, Tunsagool, Paiboon, Mhuantong, Wuttichai, Chuanchuen, Rungtip, Bessarab, Irina, Williams, Rohan B. H., Ong, Rick Twee-Hee, Suriyaphol, Gunnaporn

المساهمون: Singapore Centre for Environmental Life Sciences and Engineering

مصطلحات موضوعية: Engineering::Environmental engineering, Science::Biological sciences, Microbiology, Molecular Biology

وصف الملف: application/pdf

Relation: Scientific Reports; Suriyaphol, P., Chiu, J. K. H., Yimpring, N., Tunsagool, P., Mhuantong, W., Chuanchuen, R., Bessarab, I., Williams, R. B. H., Ong, R. T. & Suriyaphol, G. (2021). Dynamics of the fecal microbiome and antimicrobial resistome in commercial piglets during the weaning period. Scientific Reports, 11(1), 18091-. https://dx.doi.org/10.1038/s41598-021-97586-9; https://hdl.handle.net/10356/153800; 2-s2.0-85114892607; 11; 18091

الاتاحة: https://hdl.handle.net/10356/153800
https://doi.org/10.1038/s41598-021-97586-9

المؤلفون: Saw, Nay Min Min Thaw, Suwanchaikasem, Pipob, Zuniga-Montanez, Rogelio, Qiu, Guanglei, Marzinelli, Ezequiel Miguel, Wuertz, Stefan, Williams, Rohan B. H.

المساهمون: School of Civil and Environmental Engineering, Singapore Centre for Environmental Life Sciences and Engineering, Singapore Phenome Centre

مصطلحات موضوعية: Engineering::Environmental engineering, Microbial Ecology, Activated Sludge

وصف الملف: application/pdf

Relation: 1102-IRIS-10-02; Metabolites; Saw, N. M. M. T., Suwanchaikasem, P., Zuniga-Montanez, R., Qiu, G., Marzinelli, E. M., Wuertz, S. & Williams, R. B. H. (2021). Influence of extraction solvent on nontargeted metabolomics analysis of enrichment reactor cultures performing enhanced biological phosphorus removal (EBPR). Metabolites, 11(5), 269-. https://dx.doi.org/10.3390/metabo11050269; https://hdl.handle.net/10356/151060; 2-s2.0-85105429635; 11; 269

الاتاحة: https://hdl.handle.net/10356/151060
https://doi.org/10.3390/metabo11050269

المؤلفون: Martínez-Ruiz, Erika Berenice, Cooper, Myriel, Barrero-Canosa, Jimena, Haryono, Mindia A. S., Bessarab, Irina, Williams, Rohan B. H., Szewzyk, Ulrich

المساهمون: LIFE SCIENCES INSTITUTE

المصدر: Scopus OA2021

مصطلحات موضوعية: Biotransformation, Cyanotoxins, Manganese-oxidizing bacteria, Metabolic potential

Relation: Martínez-Ruiz, Erika Berenice, Cooper, Myriel, Barrero-Canosa, Jimena, Haryono, Mindia A. S., Bessarab, Irina, Williams, Rohan B. H., Szewzyk, Ulrich (2021-06-22). Genome analysis of Pseudomonas sp. OF001 and Rubrivivax sp. A210 suggests multicopper oxidases catalyze manganese oxidation required for cylindrospermopsin transformation. BMC Genomics 22 (1) : 464. ScholarBank@NUS Repository. https://doi.org/10.1186/s12864-021-07766-0; https://scholarbank.nus.edu.sg/handle/10635/231932

الاتاحة: https://scholarbank.nus.edu.sg/handle/10635/231932

المؤلفون: Esquivel-Elizondo, Sofia, Bağcı, C., Temovska, Monika, Jeon, Byoung Seung, Bessarab, Irina, Williams, Rohan B. H., Huson, Daniel H., Angenent, Largus T.

المساهمون: LIFE SCIENCES INSTITUTE

المصدر: Scopus OA2021

مصطلحات موضوعية: Caproiciproducens, chain elongation, chain-elongating bacteria, lactate, n-caproate, rBOX genes, reverse β-oxidation, thiolase

Relation: Esquivel-Elizondo, Sofia, Bağcı, C., Temovska, Monika, Jeon, Byoung Seung, Bessarab, Irina, Williams, Rohan B. H., Huson, Daniel H., Angenent, Largus T. (2021-01-14). The Isolate Caproiciproducens sp. 7D4C2 Produces n-Caproate at Mildly Acidic Conditions From Hexoses: Genome and rBOX Comparison With Related Strains and Chain-Elongating Bacteria. Frontiers in Microbiology 11 : 594524. ScholarBank@NUS Repository. https://doi.org/10.3389/fmicb.2020.594524; https://scholarbank.nus.edu.sg/handle/10635/232184

الاتاحة: https://scholarbank.nus.edu.sg/handle/10635/232184

المؤلفون: Arumugam, Krithika, Bessarab, Irina, Haryono, Mindia A. S., Liu, Xianghui, Zuniga–Montanez, Rogelio E., Roy, Samarpita, Qiu, Guanglei, Drautz–Moses, Daniela I., Law, Ying Yu, Wuertz, Stefan, Lauro, Federico M., Huson, Daniel H., Williams, Rohan B. H.

المساهمون: LIFE SCIENCES INSTITUTE

المصدر: Scopus OA2021

Relation: Arumugam, Krithika, Bessarab, Irina, Haryono, Mindia A. S., Liu, Xianghui, Zuniga–Montanez, Rogelio E., Roy, Samarpita, Qiu, Guanglei, Drautz–Moses, Daniela I., Law, Ying Yu, Wuertz, Stefan, Lauro, Federico M., Huson, Daniel H., Williams, Rohan B. H. (2021-03-16). Recovery of complete genomes and non-chromosomal replicons from activated sludge enrichment microbial communities with long read metagenome sequencing. npj Biofilms and Microbiomes 7 (1) : 23. ScholarBank@NUS Repository. https://doi.org/10.1038/s41522-021-00196-6; https://scholarbank.nus.edu.sg/handle/10635/232342

الاتاحة: https://scholarbank.nus.edu.sg/handle/10635/232342

المؤلفون: Arumugam, Krithika, Bessarab, Irina, Haryono, Mindia A. S., Williams, Rohan B. H.

المصدر: Metagenomic Data Analysis ; Methods in Molecular Biology ; page 235-259 ; ISSN 1064-3745 1940-6029 ; ISBN 9781071630716 9781071630723

الاتاحة: http://dx.doi.org/10.1007/978-1-0716-3072-3_12
https://link.springer.com/content/pdf/10.1007/978-1-0716-3072-3_12

المؤلفون: Herold, M. (Malte), Martínez Arbas, S. (Susana), Narayanasamy, S. (Shaman), Sheik, Abdul R., Kleine-Borgmann, Luise A. K., Lebrun, Laura A., Kunath, Benoît J., Roume, H. (Hugo), Bessarab, I. (Irina), Williams, Rohan B. H., Gillece, John D., Schupp, James M., Keim, Paul S., Jäger, C. (Christian), Hoopmann, Michael R., Moritz, Robert L., Ye, Y. (Yuzhen), Li, S. (Sujun), Tang, H. (Haixu), Heintz-Buschart, A. (Anna), May, P. (Patrick), Muller, E. (Emilie), Laczny, Cedric C., Wilmes, P. (Paul)

مصطلحات موضوعية: Aucun

الاتاحة: https://www.nature.com/articles/s41467-020-19006-2

المؤلفون: Herold, Malte, MARTINEZ ARBAS, Susana, Narayanasamy, Shaman, Sheik, Abdul R., Kleine-Borgmann, Luise A. K., LEBRUN, Laura, KUNATH, Benoît, Roume, Hugo, Bessarab, Irina, Williams, Rohan B. H., Gillece, John D., Schupp, James M., Keim, Paul S., Jäger, Christian, Hoopman, Michael R., Moritz, Robert L., Ye, Yuhzen, Li, Sujun, Tang, Haixu, Heintz-Buschart, Anna, MAY, Patrick, Muller, Emilie E. L., LACZNY, Cedric Christian, WILMES, Paul

المصدر: Nature Communications (2020-10-19)

مصطلحات موضوعية: activated sludge, wastewater, lipid accumulating organisms, metagenomics, metatranscriptomics, metaproteomics, meta-metabolomics, time series, ecological niche, Life sciences, Microbiology, Sciences du vivant, Microbiologie

Relation: urn:issn:2041-1723; https://orbilu.uni.lu/handle/10993/45372; info:hdl:10993/45372; https://orbilu.uni.lu/bitstream/10993/45372/1/Article.pdf; info:pmid:33077707; wos:000585919600005

الاتاحة: https://orbilu.uni.lu/handle/10993/45372
https://orbilu.uni.lu/bitstream/10993/45372/1/Article.pdf
https://doi.org/10.1038/s41467-020-19006-2

المؤلفون: Seviour, Thomas, Wong, Lan Li, Lu, Yang, Mugunthan, Sudarsan, Yang, Qiaohui, Chanda Segaran, Uma Shankari, Bessarab, Irina, Liebl, David, Williams, Rohan B. H., Law, Yingyu, Kjelleberg, Staffan

المساهمون: School of Biological Sciences, Singapore Centre for Environmental Life Sciences and Engineering

مصطلحات موضوعية: Science::Biological sciences, Anammox, Aggregation

وصف الملف: application/pdf

Relation: mBio; Seviour, T., Wong, L. L., Lu, Y., Chanda Segaran, U. S., Bessarab, I., Liebl, D., . . . Kjelleberg, S. (2020). Phase transitions by an abundant protein in the anammox extracellular matrix mediate cell-to-cell aggregation and biofilm formation. mBio, 11(5), e02052-20-. doi:10.1128/mBio.02052-20; https://hdl.handle.net/10356/145843; 2-s2.0-85090647645; 11

الاتاحة: https://hdl.handle.net/10356/145843
https://doi.org/10.1128/mBio.02052-20

المؤلفون: Tan, Shi Ming, Yung, Maria Pui Yi, Hutchinson, Paul E., Xie, Chao, Teo, Guo Hui, Muhammad Hafiz Ismail, Drautz-Moses, Daniela Isabel, Little, Peter F. R., Williams, Rohan B. H., Cohen, Yehuda

المساهمون: School of Biological Sciences, Interdisciplinary Graduate School (IGS), Singapore Centre for Environmental Life Sciences and Engineering

مصطلحات موضوعية: Science::Biological sciences::Microbiology, Metagenomics, Metatranscriptomics

وصف الملف: application/pdf

Relation: npj Biofilms and Microbiomes; Tan, S. M., Yung, M. P. Y., Hutchinson, P. E., Xie, C., Teo, G. H., Muhammad Hafiz Ismail, . . . Cohen, Y. (2019). Primer-free FISH probes from metagenomics/metatranscriptomics data permit the study of uncharacterised taxa in complex microbial communities. npj Biofilms and Microbiomes, 5(1), 17-. doi:10.1038/s41522-019-0090-9; https://hdl.handle.net/10356/142441; 2-s2.0-85068082034; 17

الاتاحة: https://hdl.handle.net/10356/142441
https://doi.org/10.1038/s41522-019-0090-9

المؤلفون: Seviour, Thomas William, Drautz-Moses, Isabel Moses, Law, Yingyu, Williams, Rohan B. H., Liu, Xianghui, Arumugam, Krithika, Natarajan, Gayathri, Wuertz, Stefan

المساهمون: School of Civil and Environmental Engineering, Singapore Centre for Environmental Life Sciences and Engineering

مصطلحات موضوعية: Genome Sequence, Activated Sludge, Science::Biological sciences

وصف الملف: 2 p.; application/pdf

Relation: Genome Announcements; Liu, X., Arumugam, K., Natarajan, G., Seviour, T. W., Drautz-Moses, D. I., Wuertz, S., . . . Williams, R. B. H. (2018). Draft genome sequence of a “Candidatus Brocadia” bacterium enriched from activated sludge collected in a tropical climate. Genome Announcements, 6(19), e00406-18-. doi:10.1128/genomeA.00406-18; https://hdl.handle.net/10356/85308; http://hdl.handle.net/10220/49195

الاتاحة: https://hdl.handle.net/10356/85308
http://hdl.handle.net/10220/49195
https://doi.org/10.1128/genomeA.00406-18

المؤلفون: Arumugam, Krithika, Bağcı, Caner, Bessarab, Irina, Beier, Sina, Buchfink, Benjamin, Górska, Anna, Qiu, Guanglei, Huson, Daniel H., Williams, Rohan B. H.

المساهمون: Singapore Centre for Environmental Life Sciences and Engineering

مصطلحات موضوعية: Microbiome, DRNTU::Engineering::Environmental engineering, Long-read Sequencing

وصف الملف: 13 p.

Relation: Microbiome; Arumugam, K., Bağcı, C., Bessarab, I., Beier, S., Buchfink, B., Górska, A., . . . Williams, R. B. H. (2019). Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data. Microbiome, 7(1), 61-. doi:10.1186/s40168-019-0665-y; http://hdl.handle.net/10220/49039; http://dx.doi.org/10.1186/s40168-019-0665-y

الاتاحة: http://hdl.handle.net/10220/49039
https://doi.org/10.1186/s40168-019-0665-y

المؤلفون: Law, Yingyu, Matysik, Artur, Chen, Xueming, Swa Thi, Sara, Ngoc Nguyen, Thi Quynh, Qiu, Guanglei, Natarajan, Gayathri, Williams, Rohan B H, Ni, Bing-Jie, Seviour, Thomas William, Wuertz, Stefan

المصدر: Law , Y , Matysik , A , Chen , X , Swa Thi , S , Ngoc Nguyen , T Q , Qiu , G , Natarajan , G , Williams , R B H , Ni , B-J , Seviour , T W & Wuertz , S 2019 , ' High Dissolved Oxygen Selection against Nitrospira Sublineage I in Full-Scale Activated Sludge ' , Environmental Science and Technology , vol. 53 , no. 14 , pp. 8157-8166 . https://doi.org/10.1021/acs.est.9b00955

وصف الملف: application/pdf

Relation: https://orbit.dtu.dk/en/publications/e1ef65b3-d9b6-43e2-ac6a-a5031812aa70

الاتاحة: https://orbit.dtu.dk/en/publications/e1ef65b3-d9b6-43e2-ac6a-a5031812aa70
https://doi.org/10.1021/acs.est.9b00955
https://backend.orbit.dtu.dk/ws/files/191501490/High_Dissolved_Oxygen_Selection_against_Nitrospira_Sublineage_I_in_Full_Scale_Activated_Sludge.pdf