المؤلفون: Yusuf Talha Tamer, William P. Russ, Fatma S. Coskun, Michael Farid, Marinelle Rodrigues, Andrew Y. Koh, Erdal Toprak, Ilona K. Gaszek

المصدر: Molecular Biology and Evolution

مصطلحات موضوعية: 0301 basic medicine, bacteriophages, antibiotic resistance, medicine.drug_class, Antibiotics, Colicins, AcademicSubjects/SCI01180, bacterial evolution, medicine.disease_cause, Microbiology, Bacteriophage, 03 medical and health sciences, deep mutational scanning, Escherichia coli, Genetics, medicine, protein evolution, Molecular Biology, Discoveries, Ecology, Evolution, Behavior and Systematics, 030102 biochemistry & molecular biology, biology, Pseudomonas aeruginosa, Escherichia coli Proteins, AcademicSubjects/SCI01130, Membrane Transport Proteins, systems biology, biology.organism_classification, Anti-Bacterial Agents, Acinetobacter baumannii, 030104 developmental biology, Colicin, bacteria, Efflux, Bacterial outer membrane, Bacterial Outer Membrane Proteins

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b378e8bd506d74a318d8ee65eb59b320
https://doi.org/10.1093/molbev/msab190

المؤلفون: Neel H Shah, Qi Wang, Qingrong Yan, Deepti Karandur, Theresa A Kadlecek, Ian R Fallahee, William P Russ, Rama Ranganathan, Arthur Weiss, John Kuriyan

المصدر: eLife, Vol 5 (2016)

مصطلحات موضوعية: tyrosine kinase, T cell receptor, ZAP-70, LAT, Lck, bacterial surface display, Medicine, Science, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://elifesciences.org/articles/20105; https://doaj.org/toc/2050-084X

URL الوصول: https://doaj.org/article/b39beca68cc0453aa3b66feed4aec35e

المؤلفون: Robert G Smock, Olivier Rivoire, William P Russ, Joanna F Swain, Stanislas Leibler, Rama Ranganathan, Lila M Gierasch

المصدر: Molecular Systems Biology, Vol 6, Iss 1, Pp 1-10 (2010)

مصطلحات موضوعية: allostery, chaperone, co‐evolution, SCA, sector, Biology (General), QH301-705.5, Medicine (General), R5-920

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1744-4292

URL الوصول: https://doaj.org/article/b2ba0e6b5cfe4e2a91bd8ce9f67a48bb

المؤلفون: William P. Russ, Rama Ranganathan, Olivier Rivoire, Yaakov Kleeorin

المساهمون: Center for Interdisciplinary Research in Biology (CIRB), Rivoire, Olivier, University of Chicago, University of Texas Southwestern Medical Center [Dallas], Centre interdisciplinaire de recherche en biologie (CIRB), Labex MemoLife, École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Collège de France (CdF (institution))-Ecole Superieure de Physique et de Chimie Industrielles de la Ville de Paris (ESPCI Paris), Université Paris sciences et lettres (PSL)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)

مصطلحات موضوعية: Histology, Computer science, media_common.quotation_subject, Inference, Context (language use), Computational biology, 01 natural sciences, Pathology and Forensic Medicine, 03 medical and health sciences, Protein structure, 0502 economics and business, 0103 physical sciences, 050207 economics, 010306 general physics, Function (engineering), Coevolution, 030304 developmental biology, media_common, chemistry.chemical_classification, 0303 health sciences, [SDV.BIBS] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], 050208 finance, 05 social sciences, Cell Biology, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Amino acid, chemistry, Epistasis, Construct (philosophy)

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f0fecaf8d08eac397dccc18ecfc7de57
https://doi.org/10.1101/2021.04.22.441025

المؤلفون: Yusuf Talha Tamer, Erdal Toprak, Fatma S. Coskun, Andrew Y. Koh, William P. Russ, Ilona K. Gaszek, Marinelle Rodrigues, Michael Farid

مصطلحات موضوعية: Pore-forming toxin, biology, medicine.drug_class, Chemistry, Antibiotics, biochemical phenomena, metabolism, and nutrition, biology.organism_classification, medicine.disease_cause, Microbiology, Multiple drug resistance, Colicin, medicine, bacteria, Efflux, Bacterial outer membrane, Escherichia coli, Bacteria

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::69d401e700775a946fe22f41ffc7575b
https://doi.org/10.1101/2020.10.28.332486

المؤلفون: Allison S. Walker, Alanna Schepartz, Rama Ranganathan, William P. Russ

المصدر: Proceedings of the National Academy of Sciences of the United States of America

مصطلحات موضوعية: Ribosome biogenesis, translation, Computational biology, Biology, 010402 general chemistry, 01 natural sciences, Ribosome, Biochemistry, Evolution, Molecular, 03 medical and health sciences, 23S ribosomal RNA, Large ribosomal subunit, Escherichia coli, Phylogeny, 030304 developmental biology, 0303 health sciences, Multidisciplinary, RNA, Ribosomal RNA, Biological Sciences, Genetic code, 0104 chemical sciences, RNA, Bacterial, RNA, Ribosomal, 23S, Chemistry, genetic code expansion, Physical Sciences, Statistical coupling analysis, Nucleic Acid Conformation, ribosome evolution, synthetic biology, Ribosomes

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ff6f1f2af0581706e852b0a29dd7834c
https://pubmed.ncbi.nlm.nih.gov/32747536

المؤلفون: Peter Kast, Christian Stocker, Matteo Figliuzzi, Rama Ranganathan, Martin Weigt, Pierre Barrat-Charlaix, Michael Socolich, Simona Cocco, William P. Russ, Rémi Monasson, Donald Hilvert

المساهمون: University of Texas Southwestern Medical Center [Dallas], Institut de Biologie Paris Seine (IBPS), Sorbonne Université (SU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Biozentrum [Basel, Suisse], University of Basel (Unibas), University of Chicago, Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich), Physique Statistique et Inférence pour la Biologie, Laboratoire de physique de l'ENS - ENS Paris (LPENS (UMR_8023)), École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP), Laboratoire de physique de l'ENS - ENS Paris (LPENS), Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-Sorbonne Université (SU)-École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-Sorbonne Université (SU)-École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)

المصدر: Science, 369 (6502)
Science
Science, American Association for the Advancement of Science, 2020, 369 (6502), pp.440-445. ⟨10.1126/science.aba3304⟩

مصطلحات موضوعية: Computer science, Context (language use), Computational biology, 010402 general chemistry, 01 natural sciences, Evolution, Molecular, 03 medical and health sciences, Protein-fragment complementation assay, [SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology, Amino Acid Sequence, Peptide sequence, ComputingMilieux_MISCELLANEOUS, 030304 developmental biology, [PHYS]Physics [physics], 0303 health sciences, Sequence, Models, Statistical, Multidisciplinary, Models, Genetic, Escherichia coli Proteins, Rational design, 0104 chemical sciences, Generative model, Chorismate mutase, Function (biology), Chorismate Mutase

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::45546e2d6b2865473d78278d7147431e
https://hdl.handle.net/20.500.11850/429569

المؤلفون: Pierre Barrat-Charlaix, Matteo Figliuzzi, William P. Russ, Simona Cocco, Rama Ranganathan, Michael Socolich, Christian Stocker, Rémi Monasson, Pater Kast, Martin Weigt, Donald Hilvert

المصدر: bioRxiv

مصطلحات موضوعية: 0303 health sciences, Sequence, Computer science, Rational design, Context (language use), Computational biology, 010402 general chemistry, 01 natural sciences, 0104 chemical sciences, 03 medical and health sciences, Generative model, ComputingMethodologies_PATTERNRECOGNITION, Protein-fragment complementation assay, Chorismate mutase, Design process, Function (biology), 030304 developmental biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2204b7299ba0da0668c14b765837901c
https://doi.org/10.1101/2020.04.01.020487

المؤلفون: Rama Ranganathan, William P. Russ, Subu K Subramanian

المصدر: Synthetic Biology

مصطلحات موضوعية: 0301 basic medicine, 030103 biophysics, Computer science, Biomedical Engineering, Bioengineering, Computational biology, modular genetic engineering, law.invention, Biomaterials, Set (abstract data type), 03 medical and health sciences, Synthetic biology, chemistry.chemical_compound, law, DNA assembly, genetic circuit, Gene, Polymerase chain reaction, Oligonucleotide, Agricultural and Biological Sciences (miscellaneous), 030104 developmental biology, chemistry, DNA microarray, orthogonal primers, Gene synthesis, DNA, Research Article, Biotechnology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5051b5b129675df67c382d709a631960
https://doi.org/10.1093/synbio/ysx008

المؤلفون: Rama Ranganathan, William P. Russ, Theresa A. Kadlecek, John Kuriyan, Ian R Fallahee, Arthur Weiss, Deepti Karandur, Qingrong Yan, Neel H. Shah, Qi Wang

المصدر: eLife, vol 5, iss OCTOBER2016
eLife, Vol 5 (2016)
Shah, NH; Wang, Q; Yan, Q; Karandur, D; Kadlecek, TA; Fallahee, IR; et al.(2016). An electrostatic selection mechanism controls sequential kinase signaling downstream of the T cell receptor. eLife, 5(OCTOBER2016). doi: 10.7554/eLife.20105. UCSF: Retrieved from: http://www.escholarship.org/uc/item/2st6657q
eLife

مصطلحات موضوعية: 0301 basic medicine, Scaffold protein, ZAP-70, Receptor tyrosine kinase, Substrate Specificity, immunology, biophysics, Receptors, structural biology, Biology (General), Tyrosine-protein kinase CSK, ZAP-70 Protein-Tyrosine Kinase, biology, General Neuroscience, ZAP70, CD28, tyrosine kinase, hemic and immune systems, General Medicine, Biophysics and Structural Biology, Cell biology, Lck, medicine.anatomical_structure, Biochemistry, Antigen, Medicine, Tyrosine kinase, Research Article, Signal Transduction, Biotechnology, QH301-705.5, T cell, Science, Immunology, Static Electricity, Receptors, Antigen, T-Cell, chemical and pharmacologic phenomena, General Biochemistry, Genetics and Molecular Biology, 03 medical and health sciences, medicine, Humans, bacterial surface display, General Immunology and Microbiology, T-cell receptor, E. coli, T-Cell, 030104 developmental biology, HEK293 Cells, LAT, Lymphocyte Specific Protein Tyrosine Kinase p56(lck), biology.protein, Biochemistry and Cell Biology, T cell receptor

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1210c111a3e47efd0adc7b4f51464a59
https://escholarship.org/uc/item/2st6657q

المؤلفون: Ian R Fallahee, Arthur Weiss, William P. Russ, Qi Wang, Deepti Karandur, Qingrong Yan, Rama Ranganathan, Neel H. Shah, John Kuriyan, Theresa A. Kadlecek

مصطلحات موضوعية: Kinase signaling, Downstream (manufacturing), Chemistry, Mechanism (biology), T-cell receptor, Selection (genetic algorithm), Cell biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::ecfcbb7606758b4d6e6d2f15401c62a3
https://doi.org/10.7554/elife.20105.045

المؤلفون: Vishal C. Nashine, Stephen J. Benkovic, Tina Vo, Michael Socolich, Rama Ranganathan, Madhusudan Natarajan, Jeeyeon Lee, William P. Russ

المصدر: Science. 322:438-442

مصطلحات موضوعية: Models, Molecular, Light, GTPase-activating protein, Protein family, Protein Conformation, Recombinant Fusion Proteins, Allosteric regulation, Ligands, Protein Engineering, Catalysis, Protein Structure, Secondary, Article, Protein structure, Allosteric Regulation, Dihydrofolate reductase, Escherichia coli, Binding Sites, Multidisciplinary, Flavoproteins, biology, Protein engineering, Fusion protein, Protein Structure, Tertiary, Cell biology, Cryptochromes, Kinetics, Tetrahydrofolate Dehydrogenase, Biochemistry, biology.protein, Statistical coupling analysis, Allosteric Site, NADP

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8cac389e658df46ab0f5dddf2f59a9c4
https://doi.org/10.1126/science.1159052

المؤلفون: Prashant Mishra, William P. Russ, Rama Ranganathan, Michael B. Yaffe, Drew M. Lowery

المصدر: Nature. 437:579-583

مصطلحات موضوعية: Genetics, WW domain, Multidisciplinary, Molecular evolution, Protein design, biology.protein, Statistical coupling analysis, Computational biology, Biology, Peptide sequence, Protein tertiary structure, Function (biology), Sequence (medicine)

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::91fcf61e3176e97e039a1a06789abe64
https://doi.org/10.1038/nature03990

المؤلفون: Stefan N. Constantinescu, Yoav I. Henis, Harvey F. Lodish, Yaniv Malka, Donald M. Engelman, Iban Ubarretxena-Belandia, Katharina F. Kubatzky, Tzvia Keren, William P. Russ

المصدر: Journal of Biological Chemistry. 278:43755-43763

مصطلحات موضوعية: Protein Conformation, Blotting, Western, Molecular Sequence Data, Protein dimer, Plasma protein binding, Biology, Transfection, Biochemistry, Antibodies, Cell Line, Epitopes, Mice, chemistry.chemical_compound, Protein structure, Viral Envelope Proteins, Genes, Reporter, Mutant protein, Receptors, Erythropoietin, Animals, Amino Acid Sequence, Receptor, Molecular Biology, Peptide sequence, Sequence Homology, Amino Acid, Cell Membrane, food and beverages, Cell Biology, Precipitin Tests, Molecular biology, Protein Structure, Tertiary, Rats, Erythropoietin receptor, Cell biology, Transmembrane domain, Microscopy, Fluorescence, chemistry, Mutation, embryonic structures, Dimerization, Plasmids, Protein Binding

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b8749ad7d5ad2109675f542d0552d4df
https://doi.org/10.1074/jbc.m302974200

المؤلفون: William P. Russ, Rama Ranganathan

المصدر: Current Opinion in Structural Biology. 12:447-452

مصطلحات موضوعية: Protein Folding, Protein Conformation, Molecular Sequence Data, Protein design, Information Storage and Retrieval, Computational biology, Biology, Protein Engineering, Conserved sequence, Protein sequencing, Protein structure, Artificial Intelligence, Sequence Analysis, Protein, Structural Biology, Protein methods, Amino Acid Sequence, Amino Acids, Databases, Protein, Molecular Biology, Conserved Sequence, Proteins, Protein engineering, Biochemistry, Structural biology, Protein folding, Sequence Alignment

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::438df5234435c45a6abca8ac068c8b74
https://doi.org/10.1016/s0959-440x(02)00346-9

المؤلفون: Melanie J. Cocco, Axel T. Brunger, William P. Russ, Donald M. Engelman, Fang Xiao Zhou

المصدر: Nature Structural Biology. 7:154-160

مصطلحات موضوعية: Leucine zipper, Chemistry, Peripheral membrane protein, Biological membrane, Biochemistry, Transmembrane protein, Transmembrane domain, Crystallography, Membrane protein, Structural Biology, Genetics, Biophysics, Integral membrane protein, Alpha helix

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::f3647e271217d8c43cde5ed87c4a79a1
https://doi.org/10.1038/72430

المؤلفون: Kimberly A, Reynolds, William P, Russ, Michael, Socolich, Rama, Ranganathan

المصدر: Methods in enzymology. 523

مصطلحات موضوعية: Evolution, Molecular, Protein Folding, Proteins, Amino Acid Sequence

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::77d9497be88fadfa5002231fb93e2c9f
https://pubmed.ncbi.nlm.nih.gov/23422432

المؤلفون: Michael Socolich, Rama Ranganathan, Kimberly A. Reynolds, William P. Russ

مصطلحات موضوعية: ComputingMethodologies_PATTERNRECOGNITION, Experimental testing, Protein design, Statistical coupling analysis, Computational design, Statistical analysis, Computational biology, Biology, Bioinformatics, Biochemical function, Protein tertiary structure

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::b6396b261e9e04405273968b9d9f7611
https://doi.org/10.1016/b978-0-12-394292-0.00010-2

المؤلفون: Stanislas Leibler, William P. Russ, Robert G. Smock, Lila M. Gierasch, Joanna F. Swain, Rama Ranganathan, Olivier Rivoire

المصدر: Molecular Systems Biology

مصطلحات موضوعية: Protein family, Protein domain, Allosteric regulation, Molecular Conformation, Computational biology, Saccharomyces cerevisiae, co-evolution, Bacterial Physiological Phenomena, General Biochemistry, Genetics and Molecular Biology, Article, Protein structure, Escherichia coli, chaperone, HSP70 Heat-Shock Proteins, Heat-Shock Proteins, Adenosine Triphosphatases, Models, Statistical, allostery, General Immunology and Microbiology, biology, Applied Mathematics, Circular Dichroism, Escherichia coli Proteins, SCA, Protein Structure, Tertiary, Computational Theory and Mathematics, Allosteric enzyme, Biochemistry, Mutagenesis, Chaperone (protein), Statistical coupling analysis, biology.protein, Protein folding, General Agricultural and Biological Sciences, sector, Allosteric Site, Information Systems, Molecular Chaperones

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e96fa13cf997935b1844e52031ed2f6b
https://pubmed.ncbi.nlm.nih.gov/20865007

المؤلفون: Michael Socolich, Steve W. Lockless, William P. Russ, Kevin H. Gardner, Heather Lee, Rama Ranganathan

المصدر: Nature. 437(7058)

مصطلحات موضوعية: Genetics, Models, Molecular, Sequence, Protein Denaturation, Protein Folding, Multidisciplinary, Multiple sequence alignment, Magnetic Resonance Spectroscopy, biology, Fold (higher-order function), Computational Biology, Proteins, Sequence alignment, Computational biology, Protein tertiary structure, Protein Structure, Tertiary, WW domain, Evolution, Molecular, biology.protein, Statistical coupling analysis, Thermodynamics, Peptide sequence, Sequence Alignment, Algorithms

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::296a991d6ca7483723274872f6dedca9
https://pubmed.ncbi.nlm.nih.gov/16177774