المؤلفون: Michael Pickles (627686), Anne Cori (260622), William J. M. Probert (3752734), Rafael Sauter (842369), Robert Hinch (11114231), Sarah Fidler (76851), Helen Ayles (42807), Peter Bock (361592), Deborah Donnell (129620), Ethan Wilson (10994555), Estelle Piwowar-Manning (433133), Sian Floyd (239400), Richard J. Hayes (10217162), Christophe Fraser (7754)

مصطلحات موضوعية: Medicine, Neuroscience, Sociology, Cancer, Statistics, Infectious Diseases, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, simulating 50 years, sexual network within, producing quantitative projections, bayesian inference framework, present future projections, model calibrates within, hiv transmission occurs, based simulation model, based model capable, trial , computationally efficient individual, based model, hiv status, hiv epidemiology, hiv epidemic, viral suppression, thus often, stratified data, present popart, powerful tools, natural type

Relation: https://figshare.com/articles/journal_contribution/S1_Appendix_-/16563235

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009301.s001

المؤلفون: Emily Howerton (10988025), Matthew J. Ferrari (11619110), Ottar N. Bjørnstad (7377545), Tiffany L. Bogich (10988022), Rebecca K. Borchering (10988028), Chris P. Jewell (5549276), James D. Nichols (7578986), William J. M. Probert (3752734), Michael C. Runge (10183434), Michael J. Tildesley (7524434), Cécile Viboud (27823), Katriona Shea (58432)

مصطلحات موضوعية: Medicine, Science Policy, Biological Sciences not elsewhere classified, public health outcomes, lowest npi levels, captures important realities, isolate infected individuals, random testing allocation, +stay%22">xlink "> stay, widely administered frequent, inform future cost, given limited immunity, ensure epidemic control, 2 transmission incorporating, combined interventions based, isolation mitigates reliance, mass testing strategies, socially costly non, distancing , including test administration, socially costly, test administration, mass testing, isolation strategies, isolate unreported, combined effect, synergistic interventions, reducing reliance, reduce reliance, pharmaceutical interventions

Relation: https://figshare.com/articles/journal_contribution/Transitions_between_model_compartments_/16897253

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009518.s007

المؤلفون: Emily Howerton (10988025), Matthew J. Ferrari (11619110), Ottar N. Bjørnstad (7377545), Tiffany L. Bogich (10988022), Rebecca K. Borchering (10988028), Chris P. Jewell (5549276), James D. Nichols (7578986), William J. M. Probert (3752734), Michael C. Runge (10183434), Michael J. Tildesley (7524434), Cécile Viboud (27823), Katriona Shea (58432)

مصطلحات موضوعية: Medicine, Science Policy, Biological Sciences not elsewhere classified, public health outcomes, lowest npi levels, captures important realities, isolate infected individuals, random testing allocation, +stay%22">xlink "> stay, widely administered frequent, inform future cost, given limited immunity, ensure epidemic control, 2 transmission incorporating, combined interventions based, isolation mitigates reliance, mass testing strategies, socially costly non, distancing , including test administration, socially costly, test administration, mass testing, isolation strategies, isolate unreported, combined effect, synergistic interventions, reducing reliance, reduce reliance, pharmaceutical interventions

Relation: https://figshare.com/articles/journal_contribution/Deterministic_model_representation_/16897256

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009518.s008

المؤلفون: James D. Nichols (7578986), Tiffany L. Bogich (10988022), Emily Howerton (10988025), Ottar N. Bjørnstad (7377545), Rebecca K. Borchering (10988028), Matthew Ferrari (324213), Murali Haran (555997), Christopher Jewell (10988031), Kim M. Pepin (7892564), William J. M. Probert (3752734), Juliet R. C. Pulliam (9187033), Michael C. Runge (10183434), Michael Tildesley (132219), Cécile Viboud (27823), Katriona Shea (58432)

مصطلحات موضوعية: Genetics, Biotechnology, Science Policy, Biological Sciences not elsewhere classified, health objectives, Severe Acute Respiratory Syndrome C., sampling designs, testing programs, population level, disease prediction, increase situational awareness, United States, nonrandom sampling, disease monitoring, testing errors, population-level statistics, Strategic testing approaches, vaccine rollout, test availability, lockdown measures, pandemic decision-making, information gain

Relation: https://figshare.com/articles/journal_contribution/Supporting_manuscript_text_including_1_A_numerical_example_of_misleading_testing_statistics_2_Conditional_probabilities_of_infection_3_Inferences_about_population_parameters_4_Capture_recapture_inference_and_5_Dealing_with_errors_in_populat/14802255

الاتاحة: https://doi.org/10.1371/journal.pbio.3001307.s001

المؤلفون: Yun Tao (10183428), William J. M. Probert (3752734), Katriona Shea (10183431), Michael C. Runge (10183434), Kevin Lafferty (6441173), Michael Tildesley (132219), Matthew Ferrari (10183437)

مصطلحات موضوعية: Computational Biology, foot-and-mouth, epidemics, outbreak management, livestock diseases, response delay

Relation: https://figshare.com/articles/journal_contribution/Comparisons_of_Cox_models_of_response_delays_from_Causes_of_delayed_outbreak_responses_and_their_impacts_on_epidemic_spread/14096937

الاتاحة: https://doi.org/10.6084/m9.figshare.14096937.v1

المؤلفون: Yun Tao (10183428), William J. M. Probert (3752734), Katriona Shea (10183431), Michael C. Runge (10183434), Kevin Lafferty (6441173), Michael Tildesley (132219), Matthew Ferrari (10183437)

مصطلحات موضوعية: Computational Biology, foot-and-mouth, epidemics, outbreak management, livestock diseases, response delay

Relation: https://figshare.com/articles/journal_contribution/Simulated_timeline_of_response_delays_from_Causes_of_delayed_outbreak_responses_and_their_impacts_on_epidemic_spread/14096943

الاتاحة: https://doi.org/10.6084/m9.figshare.14096943.v1

المؤلفون: Yun Tao (10183428), William J. M. Probert (3752734), Katriona Shea (10183431), Michael C. Runge (10183434), Kevin Lafferty (6441173), Michael Tildesley (132219), Matthew Ferrari (10183437)

مصطلحات موضوعية: Computational Biology, foot-and-mouth, epidemics, outbreak management, livestock diseases, response delay

Relation: https://figshare.com/articles/journal_contribution/Mean_observed_and_predicted_response_delays_from_Causes_of_delayed_outbreak_responses_and_their_impacts_on_epidemic_spread/14096934

الاتاحة: https://doi.org/10.6084/m9.figshare.14096934.v1

المؤلفون: Yun Tao (10183428), William J. M. Probert (3752734), Katriona Shea (10183431), Michael C. Runge (10183434), Kevin Lafferty (6441173), Michael Tildesley (132219), Matthew Ferrari (10183437)

مصطلحات موضوعية: Computational Biology, foot-and-mouth, epidemics, outbreak management, livestock diseases, response delay

Relation: https://figshare.com/articles/journal_contribution/Estimated_survival_functions_from_Causes_of_delayed_outbreak_responses_and_their_impacts_on_epidemic_spread/14096946

الاتاحة: https://doi.org/10.6084/m9.figshare.14096946.v1

المؤلفون: Yun Tao (10183428), William J. M. Probert (3752734), Katriona Shea (10183431), Michael C. Runge (10183434), Kevin Lafferty (6441173), Michael Tildesley (132219), Matthew Ferrari (10183437)

مصطلحات موضوعية: Computational Biology, foot-and-mouth, epidemics, outbreak management, livestock diseases, response delay

Relation: https://figshare.com/articles/journal_contribution/Temporal_variations_in_logistical_quantities_from_Causes_of_delayed_outbreak_responses_and_their_impacts_on_epidemic_spread/14096940

الاتاحة: https://doi.org/10.6084/m9.figshare.14096940.v1

المؤلفون: Michael Pickles (627686), Anne Cori (260622), William J. M. Probert (3752734), Rafael Sauter (842369), Robert Hinch (11114231), Sarah Fidler (76851), Helen Ayles (42807), Peter Bock (361592), Deborah Donnell (129620), Ethan Wilson (10994555), Estelle Piwowar-Manning (433133), Sian Floyd (239400), Richard J. Hayes (10217162), Christophe Fraser (7754)

مصطلحات موضوعية: Medicine, Neuroscience, Sociology, Cancer, Statistics, Infectious Diseases, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, simulating 50 years, sexual network within, producing quantitative projections, bayesian inference framework, present future projections, model calibrates within, hiv transmission occurs, based simulation model, based model capable, trial , computationally efficient individual, based model, hiv status, hiv epidemiology, hiv epidemic, viral suppression, thus often, stratified data, present popart, powerful tools, natural type

Relation: https://figshare.com/articles/figure/Calibration_of_PopART-IBM_to_PC_DHS_and_CHiPs_datasets_for_women_columns_1_and_3_and_men_columns_2_and_4_/16563247

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009301.g004

المؤلفون: Michael Pickles (627686), Anne Cori (260622), William J. M. Probert (3752734), Rafael Sauter (842369), Robert Hinch (11114231), Sarah Fidler (76851), Helen Ayles (42807), Peter Bock (361592), Deborah Donnell (129620), Ethan Wilson (10994555), Estelle Piwowar-Manning (433133), Sian Floyd (239400), Richard J. Hayes (10217162), Christophe Fraser (7754)

مصطلحات موضوعية: Medicine, Neuroscience, Sociology, Cancer, Statistics, Infectious Diseases, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, simulating 50 years, sexual network within, producing quantitative projections, bayesian inference framework, present future projections, model calibrates within, hiv transmission occurs, based simulation model, based model capable, trial , computationally efficient individual, based model, hiv status, hiv epidemiology, hiv epidemic, viral suppression, thus often, stratified data, present popart, powerful tools, natural type

Relation: https://figshare.com/articles/figure/Overview_of_the_structure_of_the_codebase_of_the_PopART-IBM_model_/16563238

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009301.g001

المؤلفون: Michael Pickles (627686), Anne Cori (260622), William J. M. Probert (3752734), Rafael Sauter (842369), Robert Hinch (11114231), Sarah Fidler (76851), Helen Ayles (42807), Peter Bock (361592), Deborah Donnell (129620), Ethan Wilson (10994555), Estelle Piwowar-Manning (433133), Sian Floyd (239400), Richard J. Hayes (10217162), Christophe Fraser (7754)

مصطلحات موضوعية: Medicine, Neuroscience, Sociology, Cancer, Statistics, Infectious Diseases, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, simulating 50 years, sexual network within, producing quantitative projections, bayesian inference framework, present future projections, model calibrates within, hiv transmission occurs, based simulation model, based model capable, trial , computationally efficient individual, based model, hiv status, hiv epidemiology, hiv epidemic, viral suppression, thus often, stratified data, present popart, powerful tools, natural type

Relation: https://figshare.com/articles/figure/Fig_3_-/16563244

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009301.g003

المؤلفون: Michael Pickles (627686), Anne Cori (260622), William J. M. Probert (3752734), Rafael Sauter (842369), Robert Hinch (11114231), Sarah Fidler (76851), Helen Ayles (42807), Peter Bock (361592), Deborah Donnell (129620), Ethan Wilson (10994555), Estelle Piwowar-Manning (433133), Sian Floyd (239400), Richard J. Hayes (10217162), Christophe Fraser (7754)

مصطلحات موضوعية: Medicine, Neuroscience, Sociology, Cancer, Statistics, Infectious Diseases, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, simulating 50 years, sexual network within, producing quantitative projections, bayesian inference framework, present future projections, model calibrates within, hiv transmission occurs, based simulation model, based model capable, trial , computationally efficient individual, based model, hiv status, hiv epidemiology, hiv epidemic, viral suppression, thus often, stratified data, present popart, powerful tools, natural type

Relation: https://figshare.com/articles/figure/Schematic_of_HIV_progression_in_the_model_in_the_absence_of_ART_/16563241

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009301.g002

المؤلفون: Michael Pickles (627686), Anne Cori (260622), William J. M. Probert (3752734), Rafael Sauter (842369), Robert Hinch (11114231), Sarah Fidler (76851), Helen Ayles (42807), Peter Bock (361592), Deborah Donnell (129620), Ethan Wilson (10994555), Estelle Piwowar-Manning (433133), Sian Floyd (239400), Richard J. Hayes (10217162), Christophe Fraser (7754)

مصطلحات موضوعية: Medicine, Neuroscience, Sociology, Cancer, Statistics, Infectious Diseases, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, simulating 50 years, sexual network within, producing quantitative projections, bayesian inference framework, present future projections, model calibrates within, hiv transmission occurs, based simulation model, based model capable, trial , computationally efficient individual, based model, hiv status, hiv epidemiology, hiv epidemic, viral suppression, thus often, stratified data, present popart, powerful tools, natural type

Relation: https://figshare.com/articles/figure/Calibration_of_PopART-IBM_to_PC_and_CHiPs_datasets_for_women_columns_1_and_3_and_men_columns_2_and_4_For_all_graphs_the_x-axis_shows_5_year_age_groups_starting_at_15_19_years_/16563250

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009301.g005

المؤلفون: Michael Pickles (627686), Anne Cori (260622), William J. M. Probert (3752734), Rafael Sauter (842369), Robert Hinch (11114231), Sarah Fidler (76851), Helen Ayles (42807), Peter Bock (361592), Deborah Donnell (129620), Ethan Wilson (10994555), Estelle Piwowar-Manning (433133), Sian Floyd (239400), Richard J. Hayes (10217162), Christophe Fraser (7754)

مصطلحات موضوعية: Medicine, Neuroscience, Sociology, Cancer, Statistics, Infectious Diseases, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, simulating 50 years, sexual network within, producing quantitative projections, bayesian inference framework, present future projections, model calibrates within, hiv transmission occurs, based simulation model, based model capable, trial , computationally efficient individual, based model, hiv status, hiv epidemiology, hiv epidemic, viral suppression, thus often, stratified data, present popart, powerful tools, natural type

Relation: https://figshare.com/articles/figure/Projected_outputs_over_time_from_1_000_calibrated_runs_from_PopART-IBM_for_a_counterfactual_scenario_with_PopART-related_intervention_HIV_testing_linkage_to_care_and_VMMC_switched_off_/16563253

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009301.g006

المؤلفون: Michael Pickles (627686), Anne Cori (260622), William J. M. Probert (3752734), Rafael Sauter (842369), Robert Hinch (11114231), Sarah Fidler (76851), Helen Ayles (42807), Peter Bock (361592), Deborah Donnell (129620), Ethan Wilson (10994555), Estelle Piwowar-Manning (433133), Sian Floyd (239400), Richard J. Hayes (10217162), Christophe Fraser (7754)

مصطلحات موضوعية: Medicine, Neuroscience, Sociology, Cancer, Statistics, Infectious Diseases, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, simulating 50 years, sexual network within, producing quantitative projections, bayesian inference framework, present future projections, model calibrates within, hiv transmission occurs, based simulation model, based model capable, trial , computationally efficient individual, based model, hiv status, hiv epidemiology, hiv epidemic, viral suppression, thus often, stratified data, present popart, powerful tools, natural type

Relation: https://figshare.com/articles/figure/Transmission_tree_from_a_single_calibrated_run_of_the_PopART-IBM_over_the_period_1970_1980_/16563256

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009301.g007

المؤلفون: Michael Pickles (627686), Anne Cori (260622), William J. M. Probert (3752734), Rafael Sauter (842369), Robert Hinch (11114231), Sarah Fidler (76851), Helen Ayles (42807), Peter Bock (361592), Deborah Donnell (129620), Ethan Wilson (10994555), Estelle Piwowar-Manning (433133), Sian Floyd (239400), Richard J. Hayes (10217162), Christophe Fraser (7754)

مصطلحات موضوعية: Medicine, Neuroscience, Sociology, Cancer, Statistics, Infectious Diseases, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, simulating 50 years, sexual network within, producing quantitative projections, bayesian inference framework, present future projections, model calibrates within, hiv transmission occurs, based simulation model, based model capable, trial , computationally efficient individual, based model, hiv status, hiv epidemiology, hiv epidemic, viral suppression, thus often, stratified data, present popart, powerful tools, natural type

Relation: https://figshare.com/articles/dataset/Parameters_estimated_in_the_calibration_framework_/16563262

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009301.t002

المؤلفون: Michael Pickles (627686), Anne Cori (260622), William J. M. Probert (3752734), Rafael Sauter (842369), Robert Hinch (11114231), Sarah Fidler (76851), Helen Ayles (42807), Peter Bock (361592), Deborah Donnell (129620), Ethan Wilson (10994555), Estelle Piwowar-Manning (433133), Sian Floyd (239400), Richard J. Hayes (10217162), Christophe Fraser (7754)

مصطلحات موضوعية: Medicine, Neuroscience, Sociology, Cancer, Statistics, Infectious Diseases, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, simulating 50 years, sexual network within, producing quantitative projections, bayesian inference framework, present future projections, model calibrates within, hiv transmission occurs, based simulation model, based model capable, trial , computationally efficient individual, based model, hiv status, hiv epidemiology, hiv epidemic, viral suppression, thus often, stratified data, present popart, powerful tools, natural type

Relation: https://figshare.com/articles/dataset/Key_partnership-related_parameters_used_in_PopART-IBM_/16563259

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009301.t001

المؤلفون: Emily Howerton (10988025), Matthew J. Ferrari (11619110), Ottar N. Bjørnstad (7377545), Tiffany L. Bogich (10988022), Rebecca K. Borchering (10988028), Chris P. Jewell (5549276), James D. Nichols (7578986), William J. M. Probert (3752734), Michael C. Runge (10183434), Michael J. Tildesley (7524434), Cécile Viboud (27823), Katriona Shea (58432)

مصطلحات موضوعية: Medicine, Science Policy, Biological Sciences not elsewhere classified, public health outcomes, lowest npi levels, captures important realities, isolate infected individuals, random testing allocation, +stay%22">xlink "> stay, widely administered frequent, inform future cost, given limited immunity, ensure epidemic control, 2 transmission incorporating, combined interventions based, isolation mitigates reliance, mass testing strategies, socially costly non, distancing , including test administration, socially costly, test administration, mass testing, isolation strategies, isolate unreported, combined effect, synergistic interventions, reducing reliance, reduce reliance, pharmaceutical interventions

Relation: https://figshare.com/articles/figure/Simulations_used_to_generate_initial_conditions_/16897235

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009518.s001

المؤلفون: Emily Howerton (10988025), Matthew J. Ferrari (11619110), Ottar N. Bjørnstad (7377545), Tiffany L. Bogich (10988022), Rebecca K. Borchering (10988028), Chris P. Jewell (5549276), James D. Nichols (7578986), William J. M. Probert (3752734), Michael C. Runge (10183434), Michael J. Tildesley (7524434), Cécile Viboud (27823), Katriona Shea (58432)

مصطلحات موضوعية: Medicine, Science Policy, Biological Sciences not elsewhere classified, public health outcomes, lowest npi levels, captures important realities, isolate infected individuals, random testing allocation, +stay%22">xlink "> stay, widely administered frequent, inform future cost, given limited immunity, ensure epidemic control, 2 transmission incorporating, combined interventions based, isolation mitigates reliance, mass testing strategies, socially costly non, distancing , including test administration, socially costly, test administration, mass testing, isolation strategies, isolate unreported, combined effect, synergistic interventions, reducing reliance, reduce reliance, pharmaceutical interventions

Relation: https://figshare.com/articles/figure/Contours_for_additional_tolerance_thresholds_/16897238

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009518.s002