المؤلفون: Eddie Luidy Imada (11187318), Diego Fernando Sanchez (11187321), Wikum Dinalankara (10526113), Thiago Vidotto (4733289), Ericka M. Ebot (11187324), Svitlana Tyekucheva (34520), Gloria Regina Franco (9335942), Lorelei Ann Mucci (11187327), Massimo Loda (47603), Edward Matthew Schaeffer (11187330), Tamara Lotan (4589959), Luigi Marchionni (363972)

مصطلحات موضوعية: Medicine, Genetics, Developmental Biology, Cancer, Hematology, Mathematical Sciences not elsewhere classified, Prostate Cancer, PTEN deletion, PTEN loss, Non-coding RNA, lncRNA, Meta-analysis

Relation: https://figshare.com/articles/journal_contribution/Additional_file_2_of_Transcriptional_landscape_of_PTEN_loss_in_primary_prostate_cancer/15058188

الاتاحة: https://doi.org/10.6084/m9.figshare.15058188.v1

المؤلفون: Qian Ke (9164990), Wikum Dinalankara (10526113), Laurent Younes (10960956), Donald Geman (78677), Luigi Marchionni (363972)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Molecular Biology, Cancer, Infectious Diseases, Computational Biology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, heterogeneity, dysregulated gene expression programs, configuration, TCGA, tumor, type, source gene, sample, DNA-RNA aberrations Cancer cells di., profile, STP

Relation: https://figshare.com/articles/journal_contribution/The_file_contains_all_supplementary_figures_and_tables_referenced_from_the_main_paper_/14772675

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008944.s001

المؤلفون: Eddie Luidy Imada (11187318), Diego Fernando Sanchez (11187321), Wikum Dinalankara (10526113), Thiago Vidotto (4733289), Ericka M. Ebot (11187324), Svitlana Tyekucheva (34520), Gloria Regina Franco (9335942), Lorelei Ann Mucci (11187327), Massimo Loda (47603), Edward Matthew Schaeffer (11187330), Tamara Lotan (4589959), Luigi Marchionni (363972)

مصطلحات موضوعية: Medicine, Genetics, Developmental Biology, Cancer, Hematology, Mathematical Sciences not elsewhere classified, Prostate Cancer, PTEN deletion, PTEN loss, Non-coding RNA, lncRNA, Meta-analysis

Relation: https://figshare.com/articles/dataset/Additional_file_1_of_Transcriptional_landscape_of_PTEN_loss_in_primary_prostate_cancer/15058182

الاتاحة: https://doi.org/10.6084/m9.figshare.15058182.v1

المؤلفون: Qian Ke (9164990), Wikum Dinalankara (10526113), Laurent Younes (10960956), Donald Geman (78677), Luigi Marchionni (363972)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Molecular Biology, Cancer, Infectious Diseases, Computational Biology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, heterogeneity, dysregulated gene expression programs, configuration, TCGA, tumor, type, source gene, sample, DNA-RNA aberrations Cancer cells di., profile, STP

Relation: https://figshare.com/articles/dataset/Colon_core_source_genes_/14772708

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008944.t003

المؤلفون: Qian Ke (9164990), Wikum Dinalankara (10526113), Laurent Younes (10960956), Donald Geman (78677), Luigi Marchionni (363972)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Molecular Biology, Cancer, Infectious Diseases, Computational Biology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, heterogeneity, dysregulated gene expression programs, configuration, TCGA, tumor, type, source gene, sample, DNA-RNA aberrations Cancer cells di., profile, STP

Relation: https://figshare.com/articles/figure/Rates_of_covering_assembly_/14772696

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008944.g005

المؤلفون: Qian Ke (9164990), Wikum Dinalankara (10526113), Laurent Younes (10960956), Donald Geman (78677), Luigi Marchionni (363972)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Molecular Biology, Cancer, Infectious Diseases, Computational Biology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, heterogeneity, dysregulated gene expression programs, configuration, TCGA, tumor, type, source gene, sample, DNA-RNA aberrations Cancer cells di., profile, STP

Relation: https://figshare.com/articles/dataset/Colon_core_target_genes_/14772711

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008944.t004

المؤلفون: Qian Ke (9164990), Wikum Dinalankara (10526113), Laurent Younes (10960956), Donald Geman (78677), Luigi Marchionni (363972)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Molecular Biology, Cancer, Infectious Diseases, Computational Biology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, heterogeneity, dysregulated gene expression programs, configuration, TCGA, tumor, type, source gene, sample, DNA-RNA aberrations Cancer cells di., profile, STP

Relation: https://figshare.com/articles/figure/Core_set_across_tissues_at_source_level_/14772687

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008944.g003

المؤلفون: Qian Ke (9164990), Wikum Dinalankara (10526113), Laurent Younes (10960956), Donald Geman (78677), Luigi Marchionni (363972)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Molecular Biology, Cancer, Infectious Diseases, Computational Biology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, heterogeneity, dysregulated gene expression programs, configuration, TCGA, tumor, type, source gene, sample, DNA-RNA aberrations Cancer cells di., profile, STP

Relation: https://figshare.com/articles/dataset/Probabilities_of_source_aberration_with_downstream_target_for_breast_cancer_subtypes_/14772717

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008944.t006

المؤلفون: Qian Ke (9164990), Wikum Dinalankara (10526113), Laurent Younes (10960956), Donald Geman (78677), Luigi Marchionni (363972)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Molecular Biology, Cancer, Infectious Diseases, Computational Biology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, heterogeneity, dysregulated gene expression programs, configuration, TCGA, tumor, type, source gene, sample, DNA-RNA aberrations Cancer cells di., profile, STP

Relation: https://figshare.com/articles/dataset/Probabilities_of_source_aberration_with_downstream_target_for_lung_cancer_subtypes_/14772720

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008944.t007

المؤلفون: Qian Ke (9164990), Wikum Dinalankara (10526113), Laurent Younes (10960956), Donald Geman (78677), Luigi Marchionni (363972)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Molecular Biology, Cancer, Infectious Diseases, Computational Biology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, heterogeneity, dysregulated gene expression programs, configuration, TCGA, tumor, type, source gene, sample, DNA-RNA aberrations Cancer cells di., profile, STP

Relation: https://figshare.com/articles/figure/Overall_analytical_workflow_/14772681

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008944.g001

المؤلفون: Qian Ke (9164990), Wikum Dinalankara (10526113), Laurent Younes (10960956), Donald Geman (78677), Luigi Marchionni (363972)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Molecular Biology, Cancer, Infectious Diseases, Computational Biology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, heterogeneity, dysregulated gene expression programs, configuration, TCGA, tumor, type, source gene, sample, DNA-RNA aberrations Cancer cells di., profile, STP

Relation: https://figshare.com/articles/dataset/The_compressed_archive_contains_6_DNABinary_txt_gz_files_which_correspond_to_binary_DNA_aberration_matrices_for_all_tumor_types_6_RNABinary_txt_gz_files_which_corresponds_to_binary_RNA_aberration_matrices_for_all_tumor_types_and_full_signat/14772678

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008944.s002

المؤلفون: Qian Ke (9164990), Wikum Dinalankara (10526113), Laurent Younes (10960956), Donald Geman (78677), Luigi Marchionni (363972)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Molecular Biology, Cancer, Infectious Diseases, Computational Biology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, heterogeneity, dysregulated gene expression programs, configuration, TCGA, tumor, type, source gene, sample, DNA-RNA aberrations Cancer cells di., profile, STP

Relation: https://figshare.com/articles/figure/Networks_of_pair_coverings_in_breast_cancer_/14772684

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008944.g002

المؤلفون: Qian Ke (9164990), Wikum Dinalankara (10526113), Laurent Younes (10960956), Donald Geman (78677), Luigi Marchionni (363972)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Molecular Biology, Cancer, Infectious Diseases, Computational Biology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, heterogeneity, dysregulated gene expression programs, configuration, TCGA, tumor, type, source gene, sample, DNA-RNA aberrations Cancer cells di., profile, STP

Relation: https://figshare.com/articles/figure/Comparison_of_one_covering_network_for_luminal_breast_cancer_subtypes_/14772690

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008944.g004

المؤلفون: Qian Ke (9164990), Wikum Dinalankara (10526113), Laurent Younes (10960956), Donald Geman (78677), Luigi Marchionni (363972)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Molecular Biology, Cancer, Infectious Diseases, Computational Biology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, heterogeneity, dysregulated gene expression programs, configuration, TCGA, tumor, type, source gene, sample, DNA-RNA aberrations Cancer cells di., profile, STP

Relation: https://figshare.com/articles/figure/Coding_tree_for_breast_ER_status_at_target_level_/14772699

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008944.g006

المؤلفون: Qian Ke (9164990), Wikum Dinalankara (10526113), Laurent Younes (10960956), Donald Geman (78677), Luigi Marchionni (363972)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Molecular Biology, Cancer, Infectious Diseases, Computational Biology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, heterogeneity, dysregulated gene expression programs, configuration, TCGA, tumor, type, source gene, sample, DNA-RNA aberrations Cancer cells di., profile, STP

Relation: https://figshare.com/articles/dataset/Probabilities_of_source_aberration_with_downstream_target_for_colon_cancer_subtypes_/14772723

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008944.t008

المؤلفون: Qian Ke (9164990), Wikum Dinalankara (10526113), Laurent Younes (10960956), Donald Geman (78677), Luigi Marchionni (363972)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Molecular Biology, Cancer, Infectious Diseases, Computational Biology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, heterogeneity, dysregulated gene expression programs, configuration, TCGA, tumor, type, source gene, sample, DNA-RNA aberrations Cancer cells di., profile, STP

Relation: https://figshare.com/articles/dataset/Examples_of_STPs_/14772702

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008944.t001

المؤلفون: Qian Ke (9164990), Wikum Dinalankara (10526113), Laurent Younes (10960956), Donald Geman (78677), Luigi Marchionni (363972)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Molecular Biology, Cancer, Infectious Diseases, Computational Biology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, heterogeneity, dysregulated gene expression programs, configuration, TCGA, tumor, type, source gene, sample, DNA-RNA aberrations Cancer cells di., profile, STP

Relation: https://figshare.com/articles/dataset/Colon_core_STPs_/14772705

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008944.t002

المؤلفون: Qian Ke (9164990), Wikum Dinalankara (10526113), Laurent Younes (10960956), Donald Geman (78677), Luigi Marchionni (363972)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Molecular Biology, Cancer, Infectious Diseases, Computational Biology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, heterogeneity, dysregulated gene expression programs, configuration, TCGA, tumor, type, source gene, sample, DNA-RNA aberrations Cancer cells di., profile, STP

Relation: https://figshare.com/articles/dataset/Entropy_estimation_at_source_level_/14772729

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008944.t010

المؤلفون: Qian Ke (9164990), Wikum Dinalankara (10526113), Laurent Younes (10960956), Donald Geman (78677), Luigi Marchionni (363972)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Molecular Biology, Cancer, Infectious Diseases, Computational Biology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, heterogeneity, dysregulated gene expression programs, configuration, TCGA, tumor, type, source gene, sample, DNA-RNA aberrations Cancer cells di., profile, STP

Relation: https://figshare.com/articles/dataset/Statistics_of_optimal_coverings_/14772714

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008944.t005

المؤلفون: Qian Ke (9164990), Wikum Dinalankara (10526113), Laurent Younes (10960956), Donald Geman (78677), Luigi Marchionni (363972)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Molecular Biology, Cancer, Infectious Diseases, Computational Biology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, heterogeneity, dysregulated gene expression programs, configuration, TCGA, tumor, type, source gene, sample, DNA-RNA aberrations Cancer cells di., profile, STP

Relation: https://figshare.com/articles/dataset/Probabilities_of_source_aberration_with_downstream_target_for_prostate_cancer_subtypes_/14772726

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008944.t009