نتائج البحث - "Wierenga, Rik K."

Relation: Sah-Teli , S K , Pinkas , M , Hynönen , M J , Butcher , S J , Wierenga , R K , Novacek , J & Venkatesan , R 2023 , ' Structural basis for different membrane-binding properties of E. coli anaerobic and human mitochondrial β-oxidation trifunctional enzymes ' , Structure , vol. 31 , no. 7 , pp. 812-+ . https://doi.org/10.1016/j.str.2023.04.011; ORCID: /0000-0001-7060-5871/work/142448743; http://hdl.handle.net/10138/564722; 1867f7a0-c82a-41b7-bfe7-7dc5bf0bb127; 001041738700001

الاتاحة: http://hdl.handle.net/10138/564722

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5

Academic Journal

Structural basis for the different membrane binding properties of the Escherichia coli anaerobic and human mitochondrial β-oxidation trifunctional enzyme complexes

المؤلفون: Sah-Teli, Shiv K., Pinkas, Matyas, Hynönen, Mikko, Butcher, Sarah, Wierenga, Rik K., Novacek, Jiri, Venkatesan, Rajaram

المساهمون: Molecular and Integrative Biosciences Research Programme, Institute of Biotechnology, Macromolecular structure and function

مصطلحات موضوعية: 11832 Microbiology and virology, 1182 Biochemistry, cell and molecular biology

وصف الملف: application/pdf

Relation: https://doi.org/10.1016/j.str.2023.04.011; Structure; Sah-Teli , S K , Pinkas , M , Hynönen , M , Butcher , S , Wierenga , R K , Novacek , J & Venkatesan , R 2023 , ' Structural basis for the different membrane binding properties of the Escherichia coli anaerobic and human mitochondrial β-oxidation trifunctional enzyme complexes ' , Structure , vol. 31 , no. 7 , pp. 812-825.e6 . https://doi.org/10.1016/j.str.2023.04.011; PURE: 269332375; PURE UUID: a00c6533-9376-4fb8-aa1c-6d8b4777694f; ORCID: /0000-0001-7060-5871/work/140761605; http://hdl.handle.net/10138/564085

الاتاحة: http://hdl.handle.net/10138/564085

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6

Academic Journal

An engineered variant of MECR reductase reveals indispensability of long-chain acyl-ACPs for mitochondrial respiration

المؤلفون: Tanvir Rahman, M., Kristian Koski, M., Panecka-Hofman, Joanna, Schmitz, Werner, Kastaniotis, Alexander J., Wade, Rebecca C., Wierenga, Rik K., Kalervo Hiltunen, J., Autio, Kaija J.

المساهمون: Suomen Kulttuurirahasto, Klaus Tschira Stiftung, Academy of Finland, Sigrid Juséliuksen Säätiö, Jane ja Aatos Erkon Säätiö

المصدر: Nature Communications ; volume 14, issue 1 ; ISSN 2041-1723

الاتاحة: http://dx.doi.org/10.1038/s41467-023-36358-7
https://www.nature.com/articles/s41467-023-36358-7.pdf
https://www.nature.com/articles/s41467-023-36358-7

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7

Academic Journal

Enzymes of the crotonase superfamily: Diverse assembly and diverse function

المؤلفون: Dalwani, Subhadra, Wierenga, Rik K.

المساهمون: Biocenter Finland, Academy of Finland

المصدر: Current Opinion in Structural Biology ; volume 82, page 102671 ; ISSN 0959-440X

الاتاحة: http://dx.doi.org/10.1016/j.sbi.2023.102671
https://api.elsevier.com/content/article/PII:S0959440X23001458?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S0959440X23001458?httpAccept=text/plain

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8

Academic Journal

The Role of Asn11 in Catalysis by Triosephosphate Isomerase

المؤلفون: Hegazy, Rania, Cordara, Gabriele, Wierenga, Rik K., Richard, John P.

المساهمون: Ministry of Higher Education, National Institute of General Medical Sciences

المصدر: Biochemistry ; volume 62, issue 11, page 1794-1806 ; ISSN 0006-2960 1520-4995

الاتاحة: http://dx.doi.org/10.1021/acs.biochem.3c00133
https://pubs.acs.org/doi/pdf/10.1021/acs.biochem.3c00133

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9

Academic Journal

Crystal structure of the collagen prolyl 4-hydroxylase (C-P4H) catalytic domain complexed with PDI: Toward a model of the C-P4H $α_2 β_2$ tetramer

المؤلفون: Murthy, Abhinandan V., Sulu, Ramita, Ruddock, Lloyd W., Myllyharju, Johanna, Koski, M. Kristian, Wierenga, Rik K., Lebedev, Andrey, Salo, Antti M., Korhonen, Kati, Venkatesan, Rajaram, Tu, Hongmin, Bergmann, Ulrich, Jänis, Janne, Laitaoja, Mikko

المصدر: The journal of biological chemistry 298(12), 102614 (2022). doi:10.1016/j.jbc.2022.102614

مصطلحات موضوعية: info:eu-repo/classification/ddc/610

جغرافية الموضوع: DE

Relation: info:eu-repo/semantics/altIdentifier/issn/1083-351X; info:eu-repo/semantics/altIdentifier/issn/0021-9258; info:eu-repo/semantics/altIdentifier/wos/WOS:000909511200010; info:eu-repo/semantics/altIdentifier/issn/1067-8816; info:eu-repo/semantics/altIdentifier/pmid/pmid:36265586; https://bib-pubdb1.desy.de/record/486030; https://bib-pubdb1.desy.de/search?p=id:%22PUBDB-2022-07030%22

الاتاحة: https://bib-pubdb1.desy.de/record/486030
https://bib-pubdb1.desy.de/search?p=id:%22PUBDB-2022-07030%22

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10

Academic Journal

Crystal structure of the collagen prolyl 4-hydroxylase (C-P4H) catalytic domain complexed with PDI: Toward a model of the C-P4H α2β2 tetramer

المؤلفون: Murthy, Abhinandan V., Sulu, Ramita, Lebedev, Andrey, Salo, Antti M., Korhonen, Kati, Venkatesan, Rajaram, Tu, Hongmin, Bergmann, Ulrich, Jänis, Janne, Laitaoja, Mikko, Ruddock, Lloyd W., Myllyharju, Johanna, Koski, M. Kristian, Wierenga, Rik K.

المصدر: Journal of Biological Chemistry ; volume 298, issue 12, page 102614 ; ISSN 0021-9258

الاتاحة: http://dx.doi.org/10.1016/j.jbc.2022.102614
https://api.elsevier.com/content/article/PII:S0021925822010572?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S0021925822010572?httpAccept=text/plain

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11

Academic Journal

Managing macromolecular crystallographic data with a laboratory information management system.

المؤلفون: Daniel, Edward¹ (AUTHOR) edward.daniel@oulu.fi, Wierenga, Rik K.¹ (AUTHOR), Lehtiö, Lari¹ (AUTHOR)

المصدر: Acta Crystallographica: Section D, Structural Biology. Aug2024, Vol. 80 Issue 8, p580-587. 8p.

مصطلحات موضوعية: *LABORATORY management, *MANAGEMENT information systems, *INFORMATION resources management, *PROTEIN crystallography, *DATA management

12

Academic Journal

Crystallographic fragment‐binding studies of the Mycobacterium tuberculosis trifunctional enzyme suggest binding pockets for the tails of the acyl‐CoA substrates at its active sites and a potential substrate‐channeling path between them.

المؤلفون: Dalwani, Subhadra, Metz, Alexander, Huschmann, Franziska U., Weiss, Manfred S., Wierenga, Rik K., Venkatesan, Rajaram

المصدر: Acta Crystallographica: Section D, Structural Biology; Aug2024, Vol. 80 Issue 8, p605-619, 15p

مصطلحات موضوعية: BIOCHEMICAL substrates, MYCOBACTERIUM tuberculosis, BINDING sites, LIPID metabolism, TUBERCULOSIS

13

Structural enzymology comparisons of multifunctional enzyme, type-1 (MFE1): the flexibility of its dehydrogenase part

المؤلفون: Kasaragod, Prasad, Midekessa, Getnet B., Sridhar, Shruthi, Schmitz, Werner, Kiema, Tiila-Riikka, Hiltunen, Jukka K., Wierenga, Rik K.

المصدر: FEBS Open Bio. 7(12):1830-1842

مصطلحات موضوعية: CoA, NAD, crotonase, dehydrogenase, substrate channeling, Biology with specialization in Structural Biology, Biologi med inriktning mot strukturbiologi

وصف الملف: electronic

URL الوصول: https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-455584
https://doi.org/10.1002/2211-5463.12337
https://uu.diva-portal.org/smash/get/diva2:1601492/FULLTEXT01.pdf

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14

Academic Journal

Substrate specificity and conformational flexibility properties of the Mycobacterium tuberculosis β-oxidation trifunctional enzyme

المؤلفون: Dalwani, Subhadra, Lampela, Outi, Leprovost, Pierre, Schmitz, Werner, Juffer, André H., Wierenga, Rik K., Venkatesan, Rajaram

مصطلحات موضوعية: ddc:570

وصف الملف: application/pdf

Relation: https://doi.org/10.1016/j.jsb.2021.107776

الاتاحة: https://opus.bibliothek.uni-wuerzburg.de/frontdoor/index/index/docId/32866
https://nbn-resolving.org/urn:nbn:de:bvb:20-opus-328666
https://doi.org/10.1016/j.jsb.2021.107776
https://opus.bibliothek.uni-wuerzburg.de/files/32866/Substrate-specificity-and-conformational-flexibility-prope_2021_Journal-of-S.pdf

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15

Academic Journal

Structure of transmembrane prolyl 4-hydroxylase reveals unique organization of EF and dioxygenase domains

المؤلفون: Myllykoski, Matti, Sutinen, Aleksi, Koski, M. Kristian, Kallio, Juha Pekka, Raasakka, Arne, Myllyharju, Johanna, Wierenga, Rik K., Koivunen, Peppi

المصدر: 100197 ; Journal of Biological Chemistry ; 296

وصف الملف: application/pdf

Relation: urn:issn:0021-9258; https://hdl.handle.net/11250/2990228; https://doi.org/10.1074/JBC.RA120.016542; cristin:1984270; Journal of Biological Chemistry. 2021, 296, 100197.

الاتاحة: https://hdl.handle.net/11250/2990228
https://doi.org/10.1074/JBC.RA120.016542

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16

Academic Journal

Structural enzymology studies with the substrate 3S‐hydroxybutanoyl‐CoA: bifunctional MFE1 is a less efficient dehydrogenase than monofunctional HAD.

المؤلفون: Sridhar, Shruthi, Kiema, Tiila‐Riikka, Schmitz, Werner, Widersten, Mikael, Wierenga, Rik K.

المصدر: FEBS Open Bio; Apr2024, Vol. 14 Issue 4, p655-674, 20p

مصطلحات موضوعية: ENZYMOLOGY, HYDROGEN bonding interactions, GLUTAMIC acid, COFACTORS (Biochemistry), NADH dehydrogenase, NAD (Coenzyme), CARRIER proteins, PROTEIN binding

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17

Academic Journal

Src Regulated by C-Terminal Phosphorylation is Monomeric

المؤلفون: Weijland, Albert, Williams, John C., Neubauer, Gitte, Courtneidge, Sara A., Wierenga, Rik K., Superti-Furga, Giulio

المصدر: Proceedings of the National Academy of Sciences of the United States of America, 1997 Apr . 94(8), 3590-3595.

URL الوصول: https://www.jstor.org/stable/41874

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Academic Journal

Complementary substrate specificity and distinct quaternary assembly of the Escherichia coli aerobic and anaerobic beta-oxidation trifunctional enzyme complexes

المؤلفون: Sah-Teli, Shiv K., Hynönen, Mikko J., Schmitz, Werner, Geraets, James A., Seitsonen, Jani, Pedersen, Jan Skov, Butcher, Sarah J., Wierenga, Rik K., Venkatesan, Rajaram

المساهمون: Macromolecular structure and function, Molecular and Integrative Biosciences Research Programme, Institute of Biotechnology

مصطلحات موضوعية: FATTY-ACID OXIDATION, ENOYL-COA HYDRATASE, CRYSTAL-STRUCTURE, MULTIENZYME COMPLEX, SOLUTION SCATTERING, STRUCTURAL BASIS, BIOLOGICAL MACROMOLECULES, INTERMEDIATE, BINDING, PURIFICATION, Biochemistry, cell and molecular biology

وصف الملف: application/pdf

Relation: The work was funded by the Academy of Finland grants to S.S. [293369] and to R.V. [289024]. The work was also supported by a grant from the Faculty of Biochemistry and Molecular Medicine, University of Oulu to S.S.; Sah-Teli , S K , Hynönen , M J , Schmitz , W , Geraets , J A , Seitsonen , J , Pedersen , J S , Butcher , S J , Wierenga , R K & Venkatesan , R 2019 , ' Complementary substrate specificity and distinct quaternary assembly of the Escherichia coli aerobic and anaerobic beta-oxidation trifunctional enzyme complexes ' , Biochemical Journal , vol. 476 , pp. 1975-1994 . https://doi.org/10.1042/BCJ20190314; ORCID: /0000-0001-7060-5871/work/68615233; ORCID: /0000-0003-3378-0683/work/68617718; http://hdl.handle.net/10138/317733; af3c69ae-b157-437a-bc50-8ffc7fd4d1f9; 000476475900010

الاتاحة: http://hdl.handle.net/10138/317733

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