المؤلفون: Gilbert, Benjamin R, Thornburg, Zane R, Lam, Vinson, Rashid, Fatema-Zahra M, Glass, John I, Villa, Elizabeth, Dame, Remus T, Luthey-Schulten, Zaida

مصطلحات موضوعية: Bioengineering, Genetics, Underpinning research, 1.1 Normal biological development and functioning, Generic health relevance, cryo-electron tomography, chromosome conformation capture (3C) maps, computational modeling, whole-cell models, chromosome modeling, ribosome distribution, bacterial minimal cell, JCVI-syn3A

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/1qk1b4w3
https://escholarship.org/content/qt1qk1b4w3/qt1qk1b4w3.pdf

المؤلفون: Bruggeman, Frank J., Remeijer, Maaike, Droste, Maarten, Salinas, Luis, Wortel, Meike, Planqué, Robert, Sauro, Herbert M., Teusink, Bas, Westerhoff, Hans V.

المصدر: Bruggeman , F J , Remeijer , M , Droste , M , Salinas , L , Wortel , M , Planqué , R , Sauro , H M , Teusink , B & Westerhoff , H V 2023 , ' Whole-cell metabolic control analysis ' , BioSystems , vol. 234 , 105067 , pp. 1-20 . https://doi.org/10.1016/j.biosystems.2023.105067

مصطلحات موضوعية: Elementary flux modes, Enzyme kinetics, Metabolic control analysis, Whole cell models

الاتاحة: https://research.vu.nl/en/publications/59d3de11-3403-4197-994f-96c27aa27060
https://doi.org/10.1016/j.biosystems.2023.105067
https://hdl.handle.net/1871.1/59d3de11-3403-4197-994f-96c27aa27060
http://www.scopus.com/inward/record.url?scp=85175292558&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85175292558&partnerID=8YFLogxK

المؤلفون: Xinyu Bi, Yanfeng Liu, Jianghua Li, Guocheng Du, Xueqin Lv, Long Liu

المصدر: Biomolecules; Volume 12; Issue 5; Pages: 721

مصطلحات موضوعية: multiscale genome-scale metabolic models, multiconstraint models, multiomics models, machine learning, whole-cell models

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Bioinformatics and Systems Biology; https://dx.doi.org/10.3390/biom12050721

الاتاحة: https://doi.org/10.3390/biom12050721

المؤلفون: Benjamin R. Gilbert, Zane R. Thornburg, Vinson Lam, Fatema-Zahra M. Rashid, John I. Glass, Elizabeth Villa, Remus T. Dame, Zaida Luthey-Schulten

المصدر: Frontiers in Molecular Biosciences, Vol 8 (2021)

مصطلحات موضوعية: cryo-electron tomography, chromosome conformation capture (3C) maps, computational modeling, whole-cell models, chromosome modeling, ribosome distribution, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmolb.2021.644133/full; https://doaj.org/toc/2296-889X

URL الوصول: https://doaj.org/article/275f892b8aea4872ababbebf2f3bc710

المؤلفون: Lucia Marucci, Matteo Barberis, Jonathan Karr, Oliver Ray, Paul R. Race, Miguel de Souza Andrade, Claire Grierson, Stefan Andreas Hoffmann, Sophie Landon, Elibio Rech, Joshua Rees-Garbutt, Richard Seabrook, William Shaw, Christopher Woods

المصدر: Frontiers in Bioengineering and Biotechnology, Vol 8 (2020)

مصطلحات موضوعية: whole-cell models, synthetic biology, systems biology, multiscale models, bioengineering, biodesign, Biotechnology, TP248.13-248.65

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fbioe.2020.00942/full; https://doaj.org/toc/2296-4185

URL الوصول: https://doaj.org/article/21234573db3648779069b4c0a12e44ef

المؤلفون: Reimers, Alexandra-M., Knoop, Henning, Bockmayr, Alexander, Steuer, Ralf

المصدر: Proceedings of the National Academy of Sciences of the United States of America, 2017 Aug 01. 114(31), E6457-E6465.

URL الوصول: https://www.jstor.org/stable/26487253

المؤلفون: Palumbo, Pasquale, Vanoni, Marco, Papa, Federico, Busti, Stefano, Wortel, Meike, Teusink, Bas, Alberghina, Lilia

المساهمون: Pelillo, Marcello, Vanoni, Marco, Papa, Federico, Busti, Stefano, Wortel, Meike, Teusink, Bas, Alberghina, Lilia

المصدر: Palumbo , P , Vanoni , M , Papa , F , Busti , S , Wortel , M , Teusink , B & Alberghina , L 2018 , An integrated model quantitatively describing metabolism, growth and cell cycle in budding yeast . in M Pelillo , M Vanoni , F Papa , S Busti , M Wortel , B Teusink & L Alberghina (eds) , Artificial Life and Evolutionary Computation : 12th Italian Workshop, WIVACE 2017, Venice, Italy, September 19-21, 2017, Revised Selected Papers . Communications in Computer and Information Science , vol. 830 , Springer/Verlag , pp. ....

مصطلحات موضوعية: Computational models, Systems biology, Whole cell models

وصف الملف: application/pdf

Relation: urn:ISBN:9783319786575

الاتاحة: https://research.vu.nl/en/publications/f067268d-6207-4fe5-b41b-2248779aafdd
https://doi.org/10.1007/978-3-319-78658-2_13
https://hdl.handle.net/1871.1/f067268d-6207-4fe5-b41b-2248779aafdd
https://research.vu.nl/ws/files/128477319/Palumbo2018_Chapter_AnIntegratedModelQuantitativelyDescribing.pdf
http://www.scopus.com/inward/record.url?scp=85045281256&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85045281256&partnerID=8YFLogxK

المؤلفون: Westermark, Stefanie, Steuer, Ralf

مصطلحات موضوعية: photosynthesis, cyanobacteria, whole-cell models, flux balance analysis (FBA), circadian clock, CO2-concentrating mechanisms (CCMs), network reconstruction, metabolism, 570 Biologie, ddc:570

وصف الملف: application/pdf; image/tiff

Relation: http://edoc.hu-berlin.de/18452/21442; urn:nbn:de:kobv:11-110-18452/21442-2; http://dx.doi.org/10.18452/20717

الاتاحة: http://edoc.hu-berlin.de/18452/21442
https://nbn-resolving.org/urn:nbn:de:kobv:11-110-18452/21442-2
https://doi.org/10.3389/fbioe.2016.00095
https://doi.org/10.18452/20717

المؤلفون: Benjamin R. Gilbert (11169474), Zane R. Thornburg (11169477), Vinson Lam (11169480), Fatema-Zahra M. Rashid (11169483), John I. Glass (38230), Elizabeth Villa (10954145), Remus T. Dame (11169486), Zaida Luthey-Schulten (227919)

مصطلحات موضوعية: Biochemistry, Molecular Biology, Structural Biology, Enzymes, Protein Trafficking, Proteomics and Intermolecular Interactions (excl. Medical Proteomics), Receptors and Membrane Biology, Signal Transduction, Structural Biology (incl. Macromolecular Modelling), Synthetic Biology, cryo-electron tomography, chromosome conformation capture (3C) maps, computational modeling, whole-cell models, chromosome modeling, ribosome distribution, bacterial minimal cell, JCVI-syn3A

Relation: https://figshare.com/articles/dataset/DataSheet1_Generating_Chromosome_Geometries_in_a_Minimal_Cell_From_Cryo-Electron_Tomograms_and_Chromosome_Conformation_Capture_Maps_PDF/15033573

الاتاحة: https://doi.org/10.3389/fmolb.2021.644133.s001

المؤلفون: Sophie, Landon, Joshua, Rees-Garbutt, Lucia, Marucci, Claire, Grierson

المصدر: Essays in Biochemistry

مصطلحات موضوعية: Gene Editing, Genome, in-silico, Review Article, History, 20th Century, whole-cell models, Models, Biological, Genome Engineering, Metabolic Engineering, Escherichia coli, metabolic models, Cell Engineering, Review Articles

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::8a3579571721cc2353064cb4fd15ccab
https://pubmed.ncbi.nlm.nih.gov/31243142

المؤلفون: Pasquale Palumbo1, 2, Marco Vanoni1, 3, Federico Papa1, Stefano Busti1, Meike Wortel4, 5, Bas Teusink4, Lilia Alberghina1

المصدر: SIMAI 2018, Roma, Italy, 02/07/2018, 06/07/2018
info:cnr-pdr/source/autori:Pasquale Palumbo1,2, Marco Vanoni1,3, Federico Papa1,2, Stefano Busti1,2, Meike Wortel4,5, Bas Teusink4, Lilia Alberghina1,3/congresso_nome:SIMAI 2018/congresso_luogo:Roma, Italy/congresso_data:02%2F07%2F2018, 06%2F07%2F2018/anno:2018/pagina_da:/pagina_a:/intervallo_pagine

مصطلحات موضوعية: Systems Biology, Whole cell models, Computational Models

URL الوصول: https://explore.openaire.eu/search/publication?articleId=cnr_________::950df826a635257a379f266a4df36ee0
http://www.cnr.it/prodotto/i/395809

المؤلفون: Gopal P. Sarma, Victor Faundez

المصدر: Cellular Logistics

مصطلحات موضوعية: 0301 basic medicine, Value (ethics), Open science, media_common.quotation_subject, integrative simulation, Complex system, whole-cell models, Biochemistry, Quantitative Biology - Quantitative Methods, Philosophy of physics, 03 medical and health sciences, phenomenological modeling, philosophy of physics, biological simulation, Quantitative Methods (q-bio.QM), media_common, Computational model, Praxis, Management science, Cell Biology, Data sharing, 030104 developmental biology, Workflow, FOS: Biological sciences, Perspective, Molecular Medicine

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9b683d1e9c1754e40e81ee5b3b0aeaf4
http://arxiv.org/abs/1712.01417

المؤلفون: Vanoni, M, Palumbo, P, Papa, F, Busti, S, Wortel, M, Teusink, B, Alberghina, L

المساهمون: Vanoni, M, Palumbo, P, Papa, F, Busti, S, Wortel, M, Teusink, B, Alberghina, L

مصطلحات موضوعية: Cell cycle, Mathematical modeling, Whole cell models

Relation: info:eu-repo/semantics/altIdentifier/wos/WOS:000361466200067; International COnference on Yeast Genetics and MOlecular Biology (ICYGMB); volume:32; firstpage:S63; lastpage:S63; journal:YEAST; http://hdl.handle.net/10281/257116

الاتاحة: http://hdl.handle.net/10281/257116

المؤلفون: Palumbo, P, Vanoni, M, Papa, F, Alberghina, L

المساهمون: Palumbo, P, Vanoni, M, Papa, F, Alberghina, L

مصطلحات موضوعية: Cell cycle, Mathematical model, Whole cell models

Relation: info:eu-repo/semantics/altIdentifier/wos/WOS:000361466200416; International COnference on Yeast Genetics and MOlecular Biology (ICYGMB); volume:32; firstpage:S240; lastpage:S240; journal:YEAST; http://hdl.handle.net/10281/257114

الاتاحة: http://hdl.handle.net/10281/257114

المؤلفون: Papa, F, Palumbo, P, Vanoni, M, Wortel, M, Teusink, B, Alberghina, L

المساهمون: Papa, F, Palumbo, P, Vanoni, M, Wortel, M, Teusink, B, Alberghina, L

مصطلحات موضوعية: Cell cycle, Mathematical modeling, Whole cell models

Relation: info:eu-repo/semantics/altIdentifier/wos/WOS:000361466200418; International COnference on Yeast Genetics and MOlecular Biology (ICYGMB); volume:32; firstpage:S240; lastpage:S241; journal:YEAST; http://hdl.handle.net/10281/257118

الاتاحة: http://hdl.handle.net/10281/257118

المؤلفون: Pasquale Palumbo1, 2, Marco Vanoni1, 3, Federico Papa1, Stefano Busti1, Meike Wortel4, 5, Bas Teusink4, Lilia Alberghina1

المصدر: WIVACE 2017, Venezia, Italy, 19/09/2017, 21/09/2017
info:cnr-pdr/source/autori:Pasquale Palumbo1,2, Marco Vanoni1,3, Federico Papa1,2, Stefano Busti1,2, Meike Wortel4,5, Bas Teusink4, Lilia Alberghina1,3/congresso_nome:WIVACE 2017/congresso_luogo:Venezia, Italy/congresso_data:19%2F09%2F2017, 21%2F09%2F2017/anno:2017/pagina_da:/pagina_a:/intervallo_pagine

مصطلحات موضوعية: Systems Biology, Whole cell models, Computational Models

URL الوصول: https://explore.openaire.eu/search/publication?articleId=cnr_________::08fab2280609ff7419ce727371597913
http://www.cnr.it/prodotto/i/395801

المؤلفون: Westermark, Stefanie, Steuer, Ralf

مصطلحات موضوعية: photosynthesis, ddc:570, circadian clock, CO2-concentrating mechanisms (CCMs), flux balance analysis (FBA), network reconstruction, whole-cell models, cyanobacteria, metabolism, 570 Biowissenschaften, Biologie

وصف الملف: application/pdf; image/tiff

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ef2aa7b2839b0f14f57e1768f443f60a

المؤلفون: Stefanie Westermark, Ralf Steuer

المصدر: Frontiers in Bioengineering and Biotechnology

مصطلحات موضوعية: 0106 biological sciences, 0301 basic medicine, Cyanobacteria, Histology, Circadian clock, Biomedical Engineering, Bioengineering, Review, network reconstruction, whole-cell models, Photosynthesis, 01 natural sciences, cyanobacteria, 03 medical and health sciences, Botany, circadian clock, flux balance analysis (FBA), photosynthesis, biology, Bioengineering and Biotechnology, biology.organism_classification, 030104 developmental biology, CO2-concentrating mechanisms (CCMs), metabolism, 010606 plant biology & botany, Biotechnology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::279945e5264fdfc8805441503e7953ef
https://pubmed.ncbi.nlm.nih.gov/28083530

المؤلفون: Manuel Salvador, Claudio Avignone-Rossa, Elizabeth Saunders, Jaime González, Juhyun Kim, José I. Jiménez

المصدر: Essays in Biochemistry
Essays In Biochemistry

مصطلحات موضوعية: 0301 basic medicine, Chassis, 030106 microbiology, ved/biology.organism_classification_rank.species, Computational biology, Biology, whole-cell models, Biochemistry, Modularity, Metabolic engineering, 03 medical and health sciences, Synthetic biology, Pseudomonas, Model organism, Molecular Biology, Organism, modularity, ved/biology, Pseudomonas putida, microbiology, Robustness (evolution), Synthetic Biology, Genetic Engineering, metabolic engineering, Function (biology), Metabolic Networks and Pathways

وصف الملف: text

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::964a3225caaddef06e0972e59588fbd8
https://pubmed.ncbi.nlm.nih.gov/27903818

المؤلفون: Burke, Paulo Eduardo Pinto

المساهمون: Costa, Luciano da Fontoura

مصطلحات موضوعية: Integração de processos, Modelos de célula completa, Redes bioquímicas, Simulação estocástica, Biochemical networks, Process integration, Stochastic simulation, Whole-cell models

وصف الملف: application/pdf

Relation: https://www.teses.usp.br/teses/disponiveis/95/95131/tde-23032021-143111/

الاتاحة: https://www.teses.usp.br/teses/disponiveis/95/95131/tde-23032021-143111/
https://doi.org/10.11606/T.95.2021.tde-23032021-143111