نتائج البحث - "Warren, Rene"

المصدر: Human ancestry inference at scale, from genomic data, (2024-09-26) ; PSB, The 30th Pacific Symposium on Biocomputing, Kona, Hawaii, USA, January 4-8, 2025

مصطلحات موضوعية: whole genome shotgun sequencing, ancestry prediction, whole genome assembly, ntRoot, ntEdit, Variant detection, SNV profiling, Simons Genome Diversity Project, 1000 Genomes Project, global ancestry inference, local ancestry inference, Bloom filters, sequence alignment-free

Relation: https://doi.org/10.5281/zenodo.13844276; https://doi.org/10.5281/zenodo.13844277; oai:zenodo.org:13844277

الاتاحة: https://doi.org/10.5281/zenodo.13844277

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6

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Interactive SARS-CoV-2 mutation timemaps

المؤلفون: Warren, Rene L., Birol, Inanc

المصدر: F1000Research 2021, 10:68

مصطلحات موضوعية: Quantitative Biology - Genomics

URL الوصول: http://arxiv.org/abs/2012.15697

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Report

HLA predictions from the bronchoalveolar lavage fluid samples of five patients at the early stage of the Wuhan seafood market COVID-19 outbreak

المؤلفون: Warren, Rene L, Birol, Inanc

المصدر: Bioinformatics, btaa756 (2020)

مصطلحات موضوعية: Quantitative Biology - Genomics

URL الوصول: http://arxiv.org/abs/2004.07108

View record in Arxiv

8

Academic Journal

Establishing association between HLA‐C*04:01 and severe COVID‐19

المؤلفون: Warren, René L., Abraham, Rohan, Calingo, Marc, Garant, Jean‐Michel, Jones, Steven J. M., Birol, Inanc

المساهمون: Genome Canada, Canadian Institutes of Health Research

المصدر: HLA ; volume 103, issue 1 ; ISSN 2059-2302 2059-2310

الاتاحة: http://dx.doi.org/10.1111/tan.15355
https://onlinelibrary.wiley.com/doi/pdf/10.1111/tan.15355

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9

Academic Journal

De novo synthetic antimicrobial peptide design with a recurrent neural network

المؤلفون: Li, Chenkai, Sutherland, Darcy, Richter, Amelia, Coombe, Lauren, Yanai, Anat, Warren, René L., Kotkoff, Monica, Hof, Fraser, Hoang, Linda M. N., Helbing, Caren C., Birol, Inanc

المساهمون: Genome British Columbia, Genome Canada

المصدر: Protein Science ; volume 33, issue 8 ; ISSN 0961-8368 1469-896X

الاتاحة: https://doi.org/10.1002/pro.5088
https://onlinelibrary.wiley.com/doi/pdf/10.1002/pro.5088

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10

Academic Journal

Structure‐aware deep learning model for peptide toxicity prediction

المؤلفون: Ebrahimikondori, Hossein, Sutherland, Darcy, Yanai, Anat, Richter, Amelia, Salehi, Ali, Li, Chenkai, Coombe, Lauren, Kotkoff, Monica, Warren, René L., Birol, Inanc

المساهمون: Genome Canada, Genome British Columbia, Investment Agriculture Foundation

المصدر: Protein Science ; volume 33, issue 7 ; ISSN 0961-8368 1469-896X

الاتاحة: http://dx.doi.org/10.1002/pro.5076
https://onlinelibrary.wiley.com/doi/pdf/10.1002/pro.5076

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11

Academic Journal

Comparison of environmental DNA and SCUBA diving methods to survey keystone rockfish species on the Central Coast of British Columbia, Canada

المؤلفون: Acharya-Patel, Neha, Groenwold, Emma, Lemay, Matthew A., Clemente-Carvalho, Rute, Morien, Evan, Dudas, Sarah, Rubidge, Emily, Yang, Cecilia Lingyu, Coombe, Lauren, Warren, René L., Frid, Alejandro, Birol, Inanc, Helbing, Caren C.

المساهمون: Mitacs, Explorers Club, Genome Canada, Genome Quebec, NSERC, Genome British Columbia

المصدر: Ecological Indicators ; volume 160, page 111830 ; ISSN 1470-160X

الاتاحة: http://dx.doi.org/10.1016/j.ecolind.2024.111830
https://api.elsevier.com/content/article/PII:S1470160X24002875?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S1470160X24002875?httpAccept=text/plain

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12

Academic Journal

Enabling robust environmental DNA assay design with “unikseq” for the identification of taxon‐specific regions within whole mitochondrial genomes

المؤلفون: Allison, Michael J., Warren, René L., Lopez, M. Louie, Acharya‐Patel, Neha, Imbery, Jacob J., Coombe, Lauren, Yang, Cecilia L., Birol, Inanc, Helbing, Caren C.

المساهمون: Genome British Columbia, Genome Canada, Natural Sciences and Engineering Research Council of Canada

المصدر: Environmental DNA ; volume 5, issue 5, page 1032-1047 ; ISSN 2637-4943 2637-4943

الاتاحة: http://dx.doi.org/10.1002/edn3.438
https://onlinelibrary.wiley.com/doi/pdf/10.1002/edn3.438

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13

Academic Journal

Models and data of AMPlify: a deep learning tool for antimicrobial peptide prediction

المؤلفون: Li, Chenkai, Warren, René L., Birol, Inanc

المساهمون: Genome BC, Genome Canada, National Institutes of Health

المصدر: BMC Research Notes ; volume 16, issue 1 ; ISSN 1756-0500

الاتاحة: http://dx.doi.org/10.1186/s13104-023-06279-1
https://link.springer.com/content/pdf/10.1186/s13104-023-06279-1.pdf
https://link.springer.com/article/10.1186/s13104-023-06279-1/fulltext.html

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14

Academic Journal

Genomic virulence features of Beauveria bassiana as a biocontrol agent for the mountain pine beetle population

المؤلفون: Li, Janet X., Fernandez, Kleinberg X., Ritland, Carol, Jancsik, Sharon, Engelhardt, Daniel B., Coombe, Lauren, Warren, René L., van Belkum, Marco J., Carroll, Allan L., Vederas, John C., Bohlmann, Joerg, Birol, Inanc

المصدر: BMC Genomics ; volume 24, issue 1 ; ISSN 1471-2164

الاتاحة: http://dx.doi.org/10.1186/s12864-023-09473-4
https://link.springer.com/content/pdf/10.1186/s12864-023-09473-4.pdf
https://link.springer.com/article/10.1186/s12864-023-09473-4/fulltext.html

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15

Academic Journal

Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2

المؤلفون: Nip, Ka Ming, Hafezqorani, Saber, Gagalova, Kristina K., Chiu, Readman, Yang, Chen, Warren, René L., Birol, Inanc

المساهمون: Gouvernement du Canada | Natural Sciences and Engineering Research Council of Canada, Genome British Columbia, Genome Canada, Gouvernement du Canada | Canadian Institutes of Health Research, U.S. Department of Health & Human Services | National Institutes of Health

المصدر: Nature Communications ; volume 14, issue 1 ; ISSN 2041-1723

الاتاحة: http://dx.doi.org/10.1038/s41467-023-38553-y
https://www.nature.com/articles/s41467-023-38553-y.pdf
https://www.nature.com/articles/s41467-023-38553-y

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16

Academic Journal

Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim

المؤلفون: Yang, Chen, Lo, Theodora, Nip, Ka Ming, Hafezqorani, Saber, Warren, René L, Birol, Inanc

المساهمون: Genome Canada and Genome BC, National Institutes of Health, University of British Columbia, Natural Sciences and Engineering Research Council of Canada

المصدر: GigaScience ; volume 12 ; ISSN 2047-217X

الاتاحة: http://dx.doi.org/10.1093/gigascience/giad013
https://academic.oup.com/gigascience/article-pdf/doi/10.1093/gigascience/giad013/49563749/giad013.pdf

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