المؤلفون: Leggieri, Patrick A, Liu, Yiyi, Hayes, Madeline, Connors, Bryce, Seppälä, Susanna, O'Malley, Michelle A, Venturelli, Ophelia S

المصدر: Annual Review of Biomedical Engineering. 23(1)

مصطلحات موضوعية: Biochemistry and Cell Biology, Biological Sciences, Biotechnology, Human Genome, Bioengineering, Genetics, Generic health relevance, Humans, Microbiota, Synthetic Biology, microbiome, synthetic biology, genetic engineering, computational modeling, meta-omics, microbial interaction network, Biomedical Engineering

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/741508rh
https://escholarship.org/content/qt741508rh/qt741508rh.pdf

المؤلفون: Weiss, Anna, Gralka, Matti, Faust, Karoline, Gutierrez, David Basanta, Pienta, Kenneth, Zhou, Xu, Venturelli, Ophelia S., Gibbons, Sean, Ebrahimkhani, Mo, Shakiba, Nika, Ma, Shaohua

المصدر: Weiss , A , Gralka , M , Faust , K , Gutierrez , D B , Pienta , K , Zhou , X , Venturelli , O S , Gibbons , S , Ebrahimkhani , M , Shakiba , N & Ma , S 2024 , ' [Correction to:] How can concepts from ecology enable insights about cellular communities? ' , Cell systems , vol. 15 , no. 11 , P1103 . https://doi.org/10.1016/j.cels.2024.10.009

الاتاحة: https://research.vu.nl/en/publications/d5fcc250-e11f-4033-9f38-0986a08add54
https://doi.org/10.1016/j.cels.2024.10.009
https://hdl.handle.net/1871.1/d5fcc250-e11f-4033-9f38-0986a08add54
http://www.scopus.com/inward/record.url?scp=85208569976&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85208569976&partnerID=8YFLogxK

المؤلفون: Harmer, Zachary P., Thompson, Jaron C., Cole, David L., Venturelli, Ophelia S., Zavala, Victor M., McClean, Megan N.

المساهمون: Division of Molecular and Cellular Biosciences, National Human Genome Research Institute, Army Research Office, National Institute of Biomedical Imaging and Bioengineering, Division of Chemical, Bioengineering, Environmental, and Transport Systems, National Institute of General Medical Sciences

المصدر: ACS Synthetic Biology ; volume 13, issue 5, page 1424-1433 ; ISSN 2161-5063 2161-5063

الاتاحة: http://dx.doi.org/10.1021/acssynbio.3c00761
https://pubs.acs.org/doi/pdf/10.1021/acssynbio.3c00761

المؤلفون: Lawson, Christopher E, Harcombe, William R, Hatzenpichler, Roland, Lindemann, Stephen R, Löffler, Frank E, O’Malley, Michelle A, García Martín, Héctor, Pfleger, Brian F, Raskin, Lutgarde, Venturelli, Ophelia S, Weissbrodt, David G, Noguera, Daniel R, McMahon, Katherine D

المصدر: Nature Reviews Microbiology. 17(12)

مصطلحات موضوعية: Human Genome, Genetics, Affordable and Clean Energy, Agriculture, Bioelectric Energy Sources, Bioengineering, Biological Therapy, Environmental Microbiology, Guidelines as Topic, Humans, Microbiota, Practice Guidelines as Topic, Microbiology, Medical Microbiology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/0d11f5zq

المؤلفون: Zengler, Karsten, Hofmockel, Kirsten, Baliga, Nitin S, Behie, Scott W, Bernstein, Hans C, Brown, James B, Dinneny, José R, Floge, Sheri A, Forry, Samuel P, Hess, Matthias, Jackson, Scott A, Jansson, Christer, Lindemann, Stephen R, Pett-Ridge, Jennifer, Maranas, Costas, Venturelli, Ophelia S, Wallenstein, Matthew D, Shank, Elizabeth A, Northen, Trent R

المصدر: Nature Methods. 16(7)

مصطلحات موضوعية: Microbiology, Biological Sciences, Human Genome, Microbiome, Genetics, Animals, Ecosystem, Host Microbial Interactions, Humans, Microbiota, Reproducibility of Results, Technology, Medical and Health Sciences, Developmental Biology, Biological sciences

URL الوصول: https://escholarship.org/uc/item/5cg1m701

المؤلفون: Venturelli, Ophelia S, Carr, Alex C, Fisher, Garth, Hsu, Ryan H, Lau, Rebecca, Bowen, Benjamin P, Hromada, Susan, Northen, Trent, Arkin, Adam P

المصدر: Molecular systems biology. 14(6)

مصطلحات موضوعية: Humans, Computational Biology, Models, Biological, Bacterial Physiological Phenomena, Metabolomics, Microbial Interactions, Gastrointestinal Microbiome, ecology, human gut microbiome, mathematical modeling, microbial community, microbial interaction, Models, Biological, Digestive Diseases, Bioinformatics, Other Biological Sciences, Biochemistry and Cell Biology

URL الوصول: https://escholarship.org/uc/item/4pw324dv

المؤلفون: Cheng, Yu‐Yu, Zhou, Zhichao, Papadopoulos, James M, Zuke, Jason D, Falbel, Tanya G, Anantharaman, Karthik, Burton, Briana M, Venturelli, Ophelia S

المساهمون: Defense Advanced Research Projects Agency, National Institute of General Medical Sciences

المصدر: Molecular Systems Biology ; volume 19, issue 3 ; ISSN 1744-4292 1744-4292

الاتاحة: http://dx.doi.org/10.15252/msb.202211406
https://onlinelibrary.wiley.com/doi/pdf/10.15252/msb.202211406
https://onlinelibrary.wiley.com/doi/full-xml/10.15252/msb.202211406
https://www.embopress.org/doi/pdf/10.15252/msb.202211406

المؤلفون: Cheng, Yu-Yu, Chen, Zhengyi, Cao, Xinyun, Ross, Tyler D., Falbel, Tanya G., Burton, Briana M., Venturelli, Ophelia S.

المساهمون: United States Department of Defense | Defense Advanced Research Projects Agency, U.S. Department of Health & Human Services | NIH | National Institute of Biomedical Imaging and Bioengineering

المصدر: Nature Communications ; volume 14, issue 1 ; ISSN 2041-1723

الاتاحة: http://dx.doi.org/10.1038/s41467-023-37582-x
https://www.nature.com/articles/s41467-023-37582-x.pdf
https://www.nature.com/articles/s41467-023-37582-x

المؤلفون: Hromada, Susan, Venturelli, Ophelia S.

المساهمون: Brown, Sam Paul, National Institute of General Medical Sciences, National Institute of Allergy and Infectious Diseases

المصدر: PLOS Biology ; volume 21, issue 5, page e3002100 ; ISSN 1545-7885

الاتاحة: http://dx.doi.org/10.1371/journal.pbio.3002100
https://dx.plos.org/10.1371/journal.pbio.3002100

المؤلفون: Thompson, Jaron C., Zavala, Victor M., Venturelli, Ophelia S.

المساهمون: Ouzounis, Christos A., Life Sciences Division, Army Research Office, National Institute of General Medical Sciences, National Institute of Biomedical Imaging and Bioengineering

المصدر: PLOS Computational Biology ; volume 19, issue 9, page e1011436 ; ISSN 1553-7358

الاتاحة: http://dx.doi.org/10.1371/journal.pcbi.1011436
https://dx.plos.org/10.1371/journal.pcbi.1011436

المؤلفون: Venturelli, Ophelia S., Wang, Harris H., Estrela, Sylvie, Huang, Kerwyn Casey, Ledesma-Amaro, Rodrigo, Fedorec, Alex J.H., Stecher, Bärbel, Lawson, Christopher E., Zarrinpar, Amir, Guo, Chun-Jun, Soyer, Orkun S.

المصدر: Cell Systems ; volume 14, issue 2, page 85-90 ; ISSN 2405-4712

الاتاحة: http://dx.doi.org/10.1016/j.cels.2023.01.002
https://api.elsevier.com/content/article/PII:S2405471223000285?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S2405471223000285?httpAccept=text/plain

المؤلفون: Connors, Bryce M., Thompson, Jaron, Ertmer, Sarah, Clark, Ryan L., Pfleger, Brian F., Venturelli, Ophelia S.

المساهمون: National Institutes of Health, Army Research Office, Bill and Melinda Gates Foundation, Wisconsin Alumni Research Foundation

المصدر: Cell Systems ; volume 14, issue 12, page 1044-1058.e13 ; ISSN 2405-4712

الاتاحة: http://dx.doi.org/10.1016/j.cels.2023.11.007
https://api.elsevier.com/content/article/PII:S2405471223003307?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S2405471223003307?httpAccept=text/plain

المؤلفون: Venturelli, Ophelia S, Tei, Mika, Bauer, Stefan, Chan, Leanne Jade G, Petzold, Christopher J, Arkin, Adam P

المصدر: Nature communications. 8(1)

مصطلحات موضوعية: Escherichia coli, Endoribonucleases, Escherichia coli Proteins, DNA-Binding Proteins, RNA, Messenger, Proteomics, Amino Acid Sequence, RNA Stability, Models, Theoretical, Regulatory Elements, Transcriptional, Metabolic Networks and Pathways, Feedback, Physiological, Metabolic Engineering, RNA, Messenger, Models, Theoretical, Regulatory Elements, Transcriptional, Feedback, Physiological, Genetics, Biotechnology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/02v2x56n

المؤلفون: Juang, Duane S., Wightman, Wren E., Lozano, Gabriel L., Juang, Terry D., Barkal, Layla J., Jiaquan Yu, Garavito, Manuel F., Hurley, Amanda, Venturelli, Ophelia S., Handelsman, Jo, Beebe, David J.

المصدر: Proceedings of the National Academy of Sciences of the United States of America; 9/24/2024, Vol. 121 Issue 39, p1-9, 23p

مصطلحات موضوعية: GREEN fluorescent protein, MICROBIAL communities, BACILLUS cereus, SOCIAL influence, COMMUNITY development

المؤلفون: Venturelli, Ophelia S, Egbert, Robert G, Arkin, Adam P

المصدر: Journal of Molecular Biology. 428(5)

مصطلحات موضوعية: Biotechnology, Bioengineering, Generic health relevance, Affordable and Clean Energy, Adaptation, Biological, Cell Engineering, Evolution, Molecular, Gene Regulatory Networks, Humans, Synthetic Biology, synthetic biology, synthetic ecology, resource allocation, ecological stability, phenotypic diversification, Medicinal and Biomolecular Chemistry, Biochemistry and Cell Biology, Microbiology, Biochemistry & Molecular Biology

URL الوصول: https://escholarship.org/uc/item/5m2590r6

المؤلفون: Baranwal, Mayank, Clark, Ryan L, Thompson, Jaron, Sun, Zeyu, Hero, Alfred O, Venturelli, Ophelia S

المساهمون: National Institutes of Health, Army Research Office, University of Wisconsin-Madison

المصدر: eLife ; volume 11 ; ISSN 2050-084X

الاتاحة: http://dx.doi.org/10.7554/elife.73870
https://cdn.elifesciences.org/articles/73870/elife-73870-v1.pdf
https://cdn.elifesciences.org/articles/73870/elife-73870-v1.xml
https://elifesciences.org/articles/73870

المؤلفون: Li, Chao, Humayun, Mouhita, Walker, Glenn M., Park, Keon Young, Connors, Bryce, Feng, Jun, Pellitteri Hahn, Molly C., Scarlett, Cameron O., Li, Jiayi, Feng, Yanbo, Clark, Ryan L., Hefti, Hunter, Schrope, Jonathan, Venturelli, Ophelia S., Beebe, David J.

المساهمون: National Science Foundation, American Cancer Society

المصدر: Advanced Science ; volume 9, issue 10 ; ISSN 2198-3844 2198-3844

الاتاحة: http://dx.doi.org/10.1002/advs.202104510
https://onlinelibrary.wiley.com/doi/pdf/10.1002/advs.202104510
https://onlinelibrary.wiley.com/doi/full-xml/10.1002/advs.202104510

المؤلفون: Feng, Jun, Qian, Yili, Zhou, Zhichao, Ertmer, Sarah, Vivas, Eugenio I., Lan, Freeman, Hamilton, Joshua J., Rey, Federico E., Anantharaman, Karthik, Venturelli, Ophelia S.

المصدر: Cell Host & Microbe ; volume 30, issue 2, page 200-215.e12 ; ISSN 1931-3128

الاتاحة: http://dx.doi.org/10.1016/j.chom.2021.12.006
https://api.elsevier.com/content/article/PII:S1931312821005771?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S1931312821005771?httpAccept=text/plain

المؤلفون: Weiss, Anna, Gralka, Matti, Faust, Karoline, Basanta Gutierrez, David, Pienta, Kenneth, Zhou, Xu, Venturelli, Ophelia S., Gibbons, Sean, Ebrahimkhani, Mo R., Shakiba, Nika, Ma, Shaohua

المصدر: Cell Systems; October 2024, Vol. 15 Issue: 10 p885-890, 6p

المؤلفون: Bloom, Jesse D., Lu, Zhongyi, Chen, David, Raval, Alpan, Venturelli, Ophelia S., Arnold, Frances H.

المصدر: BMC Biology 5:29 (2007)

مصطلحات موضوعية: Quantitative Biology - Populations and Evolution, Quantitative Biology - Biomolecules

URL الوصول: http://arxiv.org/abs/0704.1885