المؤلفون: Johannes L. Hörmann, Luis Yanes, Ashwin Vazhappilly, Antoine Sanner, Hannes Holey, Lars Pastewka, Matthew Hartley, Tjelvar S. G. Olsson

المصدر: PLoS ONE, Vol 19, Iss 6 (2024)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11198902/?tool=EBI; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/37e779ec03c64a0c952b8ddb0d0540d3

المؤلفون: Thomas M. Adams, Tjelvar S. G. Olsson, Ricardo H. Ramírez-González, Ruth Bryant, Rosie Bryson, Pablo Eduardo Campos, Paul Fenwick, David Feuerhelm, Charlotte Hayes, Tina Henriksson, Amelia Hubbard, Radivoje Jevtić, Christopher Judge, Matthew Kerton, Jacob Lage, Clare M. Lewis, Christine Lilly, Udi Meidan, Dario Novoselović, Colin Patrick, Ruth Wanyera, Diane G. O. Saunders

المصدر: BMC Genomics, Vol 22, Iss 1, Pp 1-10 (2021)

مصطلحات موضوعية: RNA-Seq, expVIP, Gene expression browser, Wheat yellow rust, Puccinia striiformis f. sp. tritici, Transcriptomics, Biotechnology, TP248.13-248.65, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1471-2164

URL الوصول: https://doaj.org/article/f1c246df504f44cc9b988ee9d7198c11

المؤلفون: Tjelvar S. G. Olsson, Matthew Hartley

المصدر: PeerJ, Vol 4, p e2674 (2016)

مصطلحات موضوعية: Image processing, Rapid iteration, Automation, Provenance, Reproducibility, Bioimage analysis, Medicine, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://peerj.com/articles/2674.pdf; https://peerj.com/articles/2674/; https://doaj.org/toc/2167-8359

URL الوصول: https://doaj.org/article/8da3ff7af17f402484cf689c5363abc4

المؤلفون: Thomas M. Adams (8710194), Tjelvar S. G. Olsson (10278854), Ricardo H. Ramírez-González (6040241), Ruth Bryant (7213016), Rosie Bryson (10278857), Pablo Eduardo Campos (10278860), Paul Fenwick (10278863), David Feuerhelm (10278866), Charlotte Hayes (10278869), Tina Henriksson (5262692), Amelia Hubbard (5801564), Radivoje Jevtić (10278872), Christopher Judge (7935113), Matthew Kerton (10278875), Jacob Lage (10278878), Clare M. Lewis (10278881), Christine Lilly (10278884), Udi Meidan (10278887), Dario Novoselović (10278890), Colin Patrick (10278893), Ruth Wanyera (10278896), Diane G. O. Saunders (10278899)

مصطلحات موضوعية: Genetics, Plant Biology, RNA-Seq, expVIP, Gene expression browser, Wheat yellow rust, Puccinia striiformis f. sp. tritici, Transcriptomics, Open science

Relation: https://figshare.com/articles/journal_contribution/Additional_file_2_of_Rust_expression_browser_an_open_source_database_for_simultaneous_analysis_of_host_and_pathogen_gene_expression_profiles_with_expVIP/14189978

الاتاحة: https://doi.org/10.6084/m9.figshare.14189978.v1

المؤلفون: Scott Berry, Matthew Hartley, Tjelvar S G Olsson, Caroline Dean, Martin Howard

المصدر: eLife, Vol 4 (2015)

مصطلحات موضوعية: epigenetic, cis memory, Polycomb, FLOWERING LOCUS C, vernalization, Medicine, Science, Biology (General), QH301-705.5

Relation: https://elifesciences.org/articles/07205; https://doaj.org/toc/2050-084X; e07205; https://doaj.org/article/227381fa56a9438b82336adda48e6ad0

الاتاحة: https://doi.org/10.7554/eLife.07205
https://doaj.org/article/227381fa56a9438b82336adda48e6ad0

المؤلفون: Udi Meidan, Ricardo H. Ramirez-Gonzalez, Tjelvar S. G. Olsson, Jacob Lage, Radivoje Jevtić, Colin Patrick, Matthew Kerton, Ruth Bryant, Diane G. O. Saunders, Charlotte Hayes, Pablo Eduardo Campos, Rosie Bryson, Christine Lilly, Ruth Wanyera, Dario Novoselović, Clare M. Lewis, Thomas M. Adams, David Feuerhelm, Amelia Hubbard, Tina Henriksson, Christopher Judge, Paul Fenwick

المصدر: BMC Genomics
BMC Genomics 22 : Article number: 166 (2021)
INTA Digital (INTA)
Instituto Nacional de Tecnología Agropecuaria
instacron:INTA
BMC Genomics, Vol 22, Iss 1, Pp 1-10 (2021)

مصطلحات موضوعية: 0106 biological sciences, Gene Expression, RNA-Seq, computer.software_genre, 01 natural sciences, Pathosystem, Roya, Gene expression browser, Puccinia striiformis f, Triticum, 2. Zero hunger, 0303 health sciences, education.field_of_study, Database, sp, Virulence, food and beverages, Rusts, Open science, DNA microarray, Biotechnology, lcsh:QH426-470, Expresión Génica, lcsh:Biotechnology, Population, Puccinia striiformis f. sp. tritici, Biology, 03 medical and health sciences, Pathogenomics, lcsh:TP248.13-248.65, Enfermedades de las Plantas, Genetics, natural sciences, expVIP, Wheat yellow rust, Transcriptomics, education, Gene, 030304 developmental biology, Plant Diseases, Puccinia, Basidiomycota, fungi, biology.organism_classification, Genética, lcsh:Genetics, tritici, Transcriptome, computer, 010606 plant biology & botany

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c63f42a56e68297ef23c0216bf3a34a9
https://pubmed.ncbi.nlm.nih.gov/33750297

المؤلفون: Thomas M. Adams (8710194), Tjelvar S. G. Olsson (10278854), Ricardo H. Ramírez-González (6040241), Ruth Bryant (7213016), Rosie Bryson (10278857), Pablo Eduardo Campos (10278860), Paul Fenwick (10278863), David Feuerhelm (10278866), Charlotte Hayes (10278869), Tina Henriksson (5262692), Amelia Hubbard (5801564), Radivoje Jevtić (10278872), Christopher Judge (7935113), Matthew Kerton (10278875), Jacob Lage (10278878), Clare M. Lewis (10278881), Christine Lilly (10278884), Udi Meidan (10278887), Dario Novoselović (10278890), Colin Patrick (10278893), Ruth Wanyera (10278896), Diane G. O. Saunders (10278899)

مصطلحات موضوعية: Genetics, Plant Biology, RNA-Seq, expVIP, Gene expression browser, Wheat yellow rust, Puccinia striiformis f. sp. tritici, Transcriptomics, Open science

Relation: https://figshare.com/articles/dataset/Additional_file_1_of_Rust_expression_browser_an_open_source_database_for_simultaneous_analysis_of_host_and_pathogen_gene_expression_profiles_with_expVIP/14189975

الاتاحة: https://doi.org/10.6084/m9.figshare.14189975.v1

المؤلفون: Caroline Dean, Scott Berry, Matthew Hartley, Martin Howard, Tjelvar S. G. Olsson, Hongchun Yang

المصدر: Science. 357:1142-1145

مصطلحات موضوعية: 0301 basic medicine, Genetics, Multidisciplinary, biology, fungi, Locus (genetics), macromolecular substances, biology.organism_classification, Chromatin, 03 medical and health sciences, 030104 developmental biology, Histone, Epigenetic Repression, Arabidopsis, Flowering Locus C, biology.protein, Gene silencing, Epigenetics

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::4022fdaa015b467818ae6a01c6734f59
https://doi.org/10.1126/science.aan1121

المؤلفون: Christine Faulkner, Matthew Gilliham, Cécilia Cheval, Anuphon Laohavisit, David Chiasson, Bradleigh Hocking, Bo Xu, Ken Shirasu, Tjelvar S. G. Olsson

المصدر: The New Phytologist

مصطلحات موضوعية: 0106 biological sciences, 0301 basic medicine, Physiology, electrophoresis mobility shift, pathogen‐associated molecular pattern (PAMP), Arabidopsis, Plant Science, Plasmodesma, Biology, 01 natural sciences, maltose‐binding protein, Microbiology, 03 medical and health sciences, chemistry.chemical_compound, biotic stress, Bacterial Proteins, Calmodulin, Downregulation and upregulation, Pseudomonas syringae, Calcium Signaling, At3g50770, Cloning, Molecular, cell‐to‐cell communication, Rapid Report, Arabidopsis Proteins, Research, Binding protein, Calcium-Binding Proteins, Callose, Plasmodesmata, Pattern recognition receptor, Biotic stress, Cell biology, 030104 developmental biology, chemistry, Receptors, Pattern Recognition, Rapid Reports, Flux (metabolism), Flagellin, 010606 plant biology & botany

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4fbf33af0ebafcdeb497d4c0dda45fd6
https://doi.org/10.1111/nph.14599

المؤلفون: Matthew Hartley, Tjelvar S. G. Olsson

المصدر: Patterns, Vol 1, Iss 5, Pp 100073-(2020)
Patterns

مصطلحات موضوعية: Computer science, Data management, provenance, General Decision Sciences, Reuse, Article, Domain (software engineering), Software, Set (psychology), reproducibility, computer.programming_language, lcsh:Computer software, Reproducibility, FAIR data, Artificial neural network, business.industry, Deep learning, deep learning, Python (programming language), artificial intelligence, Data science, Workflow, machine learning, lcsh:QA76.75-76.765, data, AI, data management, Artificial intelligence, Stewardship, Software engineering, business, computer

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ce8bd68976f5316025848e4fa87aeb14
https://doi.org/10.2139/ssrn.3565984

المؤلفون: Tjelvar S. G. Olsson, Matthew Hartley

المصدر: PeerJ
PeerJ, Vol 7, p e6562 (2019)

مصطلحات موضوعية: Process (engineering), Computer science, Bioinformatics, Data management, lcsh:Medicine, computer.software_genre, Data type, General Biochemistry, Genetics and Molecular Biology, 03 medical and health sciences, Consistency (database systems), 0302 clinical medicine, 030304 developmental biology, File system, 0303 health sciences, Application programming interface, business.industry, General Neuroscience, lcsh:R, Computational Biology, General Medicine, Genomics, Data science, Reproducibility, Metadata, Data processing, Workflow, General Agricultural and Biological Sciences, business, computer, 030217 neurology & neurosurgery

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6c4ddb4f2138a702d77371246ccd45a9
http://europepmc.org/articles/PMC6409086

المؤلفون: Tjelvar S. G. Olsson

Relation: https://github.com/JIC-CSB/expvip-ansible/tree/1.0.1; https://doi.org/10.5281/zenodo.4252415; https://doi.org/10.5281/zenodo.4252460; oai:zenodo.org:4252460

الاتاحة: https://doi.org/10.5281/zenodo.4252460

المؤلفون: Thomas M. Adams (9591452), Tjelvar S. G. Olsson (2831009), Ricardo H. Ramírez-González (6040241), Ruth Bryant (9634756), Rosie Bryson (9634758), Pablo Eduardo Campos (9634759), Paul Fenwick (9634762), David Feuerhelm (9634763), Charlotte Hayes (9634764), Tina Henriksson (9634766), Amelia Hubbard (9634774), Radivoje Jevtic (9634775), Christopher Judge (9634778), Matthew Kerton (9634781), Jacob Lage (9634786), Clare M. Lewis (9634789), Christine Lilly (9634790), Udi Meidan (9634793), Dario Novoselović (9634794), Colin Patrick (9634795), Ruth Wanyera (9634797), Diane G. O. Saunders (9591471)

مصطلحات موضوعية: Bioinformatics, Computational Biology, Host-Parasite Interactions, Gene Expression (incl. Microarray and other genome-wide approaches), Plant Pathology, RNA-Seq, ExpVIP, Wheat yellow rust, Puccinia striiformis f. sp. tritici, transcriptomics, open science

Relation: https://figshare.com/articles/dataset/Files_for_Building_the_Rust_Expression_Browser/13177163

الاتاحة: https://doi.org/10.6084/m9.figshare.13177163.v7

المؤلفون: Tom L. Blundell, William R. Pitt, Tjelvar S. G. Olsson, Colin R. Groom, Chris J Radoux

المصدر: Journal of Medicinal Chemistry. 59:4314-4325

مصطلحات موضوعية: 0301 basic medicine, Pantothenate synthetase, Binding Sites, Stereochemistry, Drug discovery, Chemistry, Proteins, Plasma protein binding, Molecular Dynamics Simulation, Ligands, 03 medical and health sciences, 030104 developmental biology, Drug Discovery, Hotspot (geology), Molecular Medicine, Peptide Synthases, Pharmacophore, Binding site, Molecular probe, Proto-Oncogene Proteins c-akt, Protein Binding

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a52b165c2f3959436d0d8834f1590fb0
https://doi.org/10.1021/acs.jmedchem.5b01980

المؤلفون: Caroline Dean, Matthew Hartley, Susan Duncan, Stefanie Rosa, Tjelvar S. G. Olsson

المصدر: Bio Protoc

مصطلحات موضوعية: 0301 basic medicine, 030219 obstetrics & reproductive medicine, medicine.diagnostic_test, Oligonucleotide, Chemistry, Strategy and Management, Mechanical Engineering, Metals and Alloys, RNA, In situ hybridization, Molecular biology, Industrial and Manufacturing Engineering, Cell biology, 03 medical and health sciences, chemistry.chemical_compound, 030104 developmental biology, 0302 clinical medicine, Transcription (biology), Gene expression, medicine, Fluorescence microscope, Methods Article, DNA, Fluorescence in situ hybridization

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c00e75bcd1d45036d98af80365ac05b6
https://europepmc.org/articles/PMC8410357/

المؤلفون: Hongchun, Yang, Scott, Berry, Tjelvar S G, Olsson, Matthew, Hartley, Martin, Howard, Caroline, Dean

المصدر: Science (New York, N.Y.). 357(6356)

مصطلحات موضوعية: Cold Temperature, Histones, Arabidopsis Proteins, Arabidopsis, Polycomb Repressive Complex 2, MADS Domain Proteins, Gene Silencing, Methylation

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::627427bcccd047c87f1d15576c0215b1
https://pubmed.ncbi.nlm.nih.gov/29257969

المؤلفون: Peter A. Wood, Peter T. A. Galek, Colin R. Groom, Neil Feeder, Elna Pidcock, Tjelvar S. G. Olsson, Simon J. Cottrell, Jason C. Cole

المصدر: CrystEngComm. 15:65-72

مصطلحات موضوعية: Crystal, Crystallography, Chemistry, Plane (geometry), CIPAMFYLLINE, Crystalline materials, Solid-state, General Materials Science, Context (language use), General Chemistry, Crystal structure, Condensed Matter Physics, Acceptor

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::800c7bf77186056e24cf94681c04ae27
https://doi.org/10.1039/c2ce25849h

المؤلفون: Marcel L. Verdonk, Oliver Korb, Simon J. Bowden, Tjelvar S. G. Olsson, John W. Liebeschuetz, Jason C. Cole, Richard J. Hall

المصدر: Journal of Chemical Information and Modeling. 52:1262-1274

مصطلحات موضوعية: Computer science, General Chemical Engineering, Library and Information Sciences, Ligands, Machine learning, computer.software_genre, Small Molecule Libraries, Drug Delivery Systems, Protein structure, Drug Discovery, Virtual screening, Binding Sites, Ensemble selection, Drug discovery, business.industry, Proteins, General Chemistry, Computer Science Applications, Key factors, Docking (molecular), A priori and a posteriori, Artificial intelligence, business, computer, Algorithms

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f106928c76ecb625cb8604006153938b
https://doi.org/10.1021/ci2005934

المؤلفون: John W. Liebeschuetz, Robin Taylor, Jason C. Cole, Simon J. Cottrell, Tjelvar S. G. Olsson

المصدر: Journal of Chemical Information and Modeling. 52:956-962

مصطلحات موضوعية: Pyridines, Computer science, General Chemical Engineering, Molecular Conformation, Crystallographic data, Crystal structure, Library and Information Sciences, Crystallography, X-Ray, Ring (chemistry), Molecular conformation, Small Molecule Libraries, Piperidines, Computational chemistry, Cluster Analysis, Humans, Molecule, Pyrans, Proteins, Order (ring theory), General Chemistry, Small molecule, Computer Science Applications, Chemical physics, Drug Design, Algorithms, Databases, Chemical, Software, Protein Binding

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ab469ce410d538915713c5eaf4cdfb04
https://doi.org/10.1021/ci200439d

المؤلفون: John W. Liebeschuetz, Mats Linder, Tore Brinck, Adam Johannes Johansson, Tjelvar S. G. Olsson

المصدر: Journal of Chemical Information and Modeling. 51:1906-1917

مصطلحات موضوعية: Models, Molecular, Computer science, Process (engineering), Chemistry, Pharmaceutical, General Chemical Engineering, Design strategy, Library and Information Sciences, Ligands, Substrate Specificity, Small Molecule Libraries, Catalytic Domain, Drug Discovery, Combinatorial Chemistry Techniques, Data Mining, Humans, Computational design, Computer Simulation, Catalytic rate, Databases, Protein, Protocol (object-oriented programming), Binding Sites, Proteins, General Chemistry, Combinatorial chemistry, Transition state, Computer Science Applications, Kinetics, Pharmaceutical Preparations, Mutagenesis, Drug Design, Biocatalysis, Thermodynamics, Biochemical engineering, Protein Binding

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::116fca8ea829797bbc56aa08ffe9ca64
https://doi.org/10.1021/ci200177d