المؤلفون: Bart T. L. H. van de Vossenberg, Donna S. Smith, Marga P. E. van Gent-Pelzer, Marlies van den Berg, Marcel Govaert, Carin M. Helderman, Theo A. J. van der Lee

المصدر: PhytoFrontiers, Vol 4, Iss 1, Pp 31-39 (2024)

مصطلحات موضوعية: Chytridiomycota, molecular viability, mRNA, pathogen detection, potato wart disease, real-time RT-PCR, Plant culture, SB1-1110, Botany, QK1-989

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2690-5442

URL الوصول: https://doaj.org/article/ff6680062c4d4c6eb6b30f8b4fddcba6

المؤلفون: Hai D. T. Nguyen, Ekaterina Ponomareva, Kasia Dadej, Donna Smith, Melissa Antoun, Theo A. J. van der Lee, Bart T. L. H. van de Vossenberg

المصدر: PLoS ONE, Vol 19, Iss 2 (2024)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10861067/?tool=EBI; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/9caffef9acc44fc5b623ee217359ab84

المؤلفون: Hai D T Nguyen, Ekaterina Ponomareva, Kasia Dadej, Donna Smith, Melissa Antoun, Theo A J van der Lee, Bart T L H van de Vossenberg

المصدر: PLoS ONE, Vol 19, Iss 9, p e0310148 (2024)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/b76647b442504df3ba2540b4906e6535

المؤلفون: Wasin Poncheewin, Anne D. van Diepeningen, Theo A. J. van der Lee, Maria Suarez-Diez, Peter J. Schaap

المصدر: Scientific Reports, Vol 12, Iss 1, Pp 1-12 (2022)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2045-2322

URL الوصول: https://doaj.org/article/00e7090c94294239b16e4d4520732c08

المؤلفون: Theo A. J. van der Lee, Marga P. E. van Gent-Pelzer, Eef M. Jonkheer, Balázs Brankovics, Ilse M. Houwers, Jan M. van der Wolf, Peter J. M. Bonants, Inge van Duivenbode, Robert A. M. Vreeburg, Mathijs Nas, Sandra Smit

المصدر: Microorganisms; Volume 11; Issue 8; Pages: 2080

مصطلحات موضوعية: Pectobacterium brasiliense, TaqMan, field testing, pangenome, blackleg

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Plant Microbe Interactions; https://dx.doi.org/10.3390/microorganisms11082080

الاتاحة: https://doi.org/10.3390/microorganisms11082080

المؤلفون: Eef M. Jonkheer, Balázs Brankovics, Ilse M. Houwers, Jan M. van der Wolf, Peter J. M. Bonants, Robert A. M. Vreeburg, Robert Bollema, Jorn R. de Haan, Lidija Berke, Sandra Smit, Dick de Ridder, Theo A. J. van der Lee

المصدر: BMC Genomics, Vol 22, Iss 1, Pp 1-18 (2021)

مصطلحات موضوعية: Pectobacterium, Soft rot Pectobacteriaceae, Plant pathogen, Comparative genomics, Pangenome, Gene repertoire, Biotechnology, TP248.13-248.65, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1471-2164

URL الوصول: https://doaj.org/article/7e632b9b6c3a4ff98979ebd848236f30

المؤلفون: Eef M. Jonkheer (10642853), Balázs Brankovics (2839439), Ilse M. Houwers (10642856), Jan M. van der Wolf (4709566), Peter J. M. Bonants (10642859), Robert A. M. Vreeburg (10642862), Robert Bollema (10642865), Jorn R. de Haan (10642868), Lidija Berke (2131078), Sandra Smit (11638), Dick de Ridder (17852), Theo A. J. van der Lee (2839442)

مصطلحات موضوعية: Genetics, Pectobacterium, Soft rot Pectobacteriaceae, Plant pathogen, Comparative genomics, Pangenome, Gene repertoire, Phylogeny, Virulence, Pectobacterium brasiliense

Relation: https://figshare.com/articles/journal_contribution/Additional_file_3_of_The_Pectobacterium_pangenome_with_a_focus_on_Pectobacterium_brasiliense_shows_a_robust_core_and_extensive_exchange_of_genes_from_a_shared_gene_pool/14411537

الاتاحة: https://doi.org/10.6084/m9.figshare.14411537.v1

المؤلفون: Kerry O’Donnell, Abdullah M. S. Al-Hatmi, Takayuki Aoki, Balázs Brankovics, José F. Cano-Lira, Jeffrey J. Coleman, G. Sybren de Hoog, Antonio Di Pietro, Rasmus J. N. Frandsen, David M. Geiser, Connie F. C. Gibas, Josep Guarro, Hye-Seon Kim, H. Corby Kistler, Imane Laraba, John F. Leslie, Manuel S. López-Berges, Erik Lysøe, Jacques F. Meis, Michel Monod, Robert H. Proctor, Martijn Rep, Carmen Ruiz-Roldán, Adnan Šišić, Jason E. Stajich, Emma T. Steenkamp, Brett A. Summerell, Theo A. J. van der Lee, Anne D. van Diepeningen, Paul E. Verweij, Cees Waalwijk, Todd J. Ward, Brian L. Wickes, Nathan P. Wiederhold, Michael J. Wingfield, Ning Zhang, Sean X. Zhang

المصدر: mSphere, Vol 5, Iss 5 (2020)

مصطلحات موضوعية: clinical mycology, evolution, fungi, phylogenetics, taxonomy, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2379-5042

URL الوصول: https://doaj.org/article/8841f3cbab27463e81153f585dd70867

المؤلفون: Balázs Brankovics, Anne D. van Diepeningen, G. Sybren de Hoog, Theo A. J. van der Lee, Cees Waalwijk

المصدر: Frontiers in Microbiology, Vol 11 (2020)

مصطلحات موضوعية: mitogenomics, introgression, Fusarium oxysporum species complex, F. fujikuroi species complex, phylogenetics, horizontal gene transfer, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2020.01092/full; https://doaj.org/toc/1664-302X

URL الوصول: https://doaj.org/article/4a12e02ee26e4ea2a39c70a19eb921c5

المؤلفون: Meixin Yang, Hao Zhang, Theo A. J. van der Lee, Cees Waalwijk, Anne D. van Diepeningen, Jie Feng, Balázs Brankovics, Wanquan Chen

المصدر: Frontiers in Microbiology, Vol 11 (2020)

مصطلحات موضوعية: Fusarium asiaticum, mitogenome, introns, migrations, population genomics, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2020.00839/full; https://doaj.org/toc/1664-302X

URL الوصول: https://doaj.org/article/4b70d30281d94d9db3fc53f9d9e2e16e

المؤلفون: Hai D. T. Nguyen, Ekaterina Ponomareva, Kasia Dadej, Donna Smith, Melissa Antoun, Theo A. J. van der Lee, Bart T. L. H. van de Vossenberg

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, target enrichment approach, sequenced bases mapped, obligate fungal pathogen, div >< p, based molecular detection, yielded sequencing data, samples generally results, potato wart disease, target enriched samples, enhancing genome sequencing, synchytrium endobioticum <, nuclear genome sequences, enriched samples, nuclear genome, illumina sequencing, potato host, genome assemblies, endobioticum <, valuable tool, tuber galls, strongly enhance, purified spores, highly contaminated

Relation: https://figshare.com/articles/dataset/Coverage_of_each_1kb_window_/25207935

الاتاحة: https://doi.org/10.1371/journal.pone.0296842.s002
https://figshare.com/articles/dataset/Coverage_of_each_1kb_window_/25207935

المؤلفون: Hai D. T. Nguyen, Ekaterina Ponomareva, Kasia Dadej, Donna Smith, Melissa Antoun, Theo A. J. van der Lee, Bart T. L. H. van de Vossenberg

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, target enrichment approach, sequenced bases mapped, obligate fungal pathogen, div >< p, based molecular detection, yielded sequencing data, samples generally results, potato wart disease, target enriched samples, enhancing genome sequencing, synchytrium endobioticum <, nuclear genome sequences, enriched samples, nuclear genome, illumina sequencing, potato host, genome assemblies, endobioticum <, valuable tool, tuber galls, strongly enhance, purified spores, highly contaminated

Relation: https://figshare.com/articles/dataset/Sequencing_outputs_and_mapping_statistics_of_samples_/25207932

الاتاحة: https://doi.org/10.1371/journal.pone.0296842.s001
https://figshare.com/articles/dataset/Sequencing_outputs_and_mapping_statistics_of_samples_/25207932

المؤلفون: Hai D. T. Nguyen, Ekaterina Ponomareva, Kasia Dadej, Donna Smith, Melissa Antoun, Theo A. J. van der Lee, Bart T. L. H. van de Vossenberg

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, target enrichment approach, sequenced bases mapped, obligate fungal pathogen, div >< p, based molecular detection, yielded sequencing data, samples generally results, potato wart disease, target enriched samples, enhancing genome sequencing, synchytrium endobioticum <, nuclear genome sequences, enriched samples, nuclear genome, illumina sequencing, potato host, genome assemblies, endobioticum <, valuable tool, tuber galls, strongly enhance, purified spores, highly contaminated

Relation: https://figshare.com/articles/dataset/Proportion_of_1kb_window_covered_by_reads_/25207938

الاتاحة: https://doi.org/10.1371/journal.pone.0296842.s003
https://figshare.com/articles/dataset/Proportion_of_1kb_window_covered_by_reads_/25207938

المؤلفون: Hai D. T. Nguyen, Ekaterina Ponomareva, Kasia Dadej, Donna Smith, Melissa Antoun, Theo A. J. van der Lee, Bart T. L. H. van de Vossenberg

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, target enrichment approach, sequenced bases mapped, obligate fungal pathogen, div >< p, based molecular detection, yielded sequencing data, samples generally results, potato wart disease, target enriched samples, enhancing genome sequencing, synchytrium endobioticum <, nuclear genome sequences, enriched samples, nuclear genome, illumina sequencing, potato host, genome assemblies, endobioticum <, valuable tool, tuber galls, strongly enhance, purified spores, highly contaminated

Relation: https://figshare.com/articles/dataset/Percentage_of_the_8671_i_S_i_i_endobioticum_i_LEV6574_genes_putatively_detected_on_the_genome_assemblies_by_BLASTn_/25207944

الاتاحة: https://doi.org/10.1371/journal.pone.0296842.s005
https://figshare.com/articles/dataset/Percentage_of_the_8671_i_S_i_i_endobioticum_i_LEV6574_genes_putatively_detected_on_the_genome_assemblies_by_BLASTn_/25207944

المؤلفون: Hai D. T. Nguyen, Ekaterina Ponomareva, Kasia Dadej, Donna Smith, Melissa Antoun, Theo A. J. van der Lee, Bart T. L. H. van de Vossenberg

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, target enrichment approach, sequenced bases mapped, obligate fungal pathogen, div >< p, based molecular detection, yielded sequencing data, samples generally results, potato wart disease, target enriched samples, enhancing genome sequencing, synchytrium endobioticum <, nuclear genome sequences, enriched samples, nuclear genome, illumina sequencing, potato host, genome assemblies, endobioticum <, valuable tool, tuber galls, strongly enhance, purified spores, highly contaminated

Relation: https://figshare.com/articles/dataset/Metagenome_assembly_lengths_/25207941

الاتاحة: https://doi.org/10.1371/journal.pone.0296842.s004
https://figshare.com/articles/dataset/Metagenome_assembly_lengths_/25207941

المؤلفون: Hai D. T. Nguyen, Ekaterina Ponomareva, Kasia Dadej, Donna Smith, Melissa Antoun, Theo A. J. van der Lee, Bart T. L. H. van de Vossenberg

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, target enrichment approach, sequenced bases mapped, obligate fungal pathogen, div >< p, based molecular detection, yielded sequencing data, samples generally results, potato wart disease, target enriched samples, enhancing genome sequencing, synchytrium endobioticum <, nuclear genome sequences, enriched samples, nuclear genome, illumina sequencing, potato host, genome assemblies, endobioticum <, valuable tool, tuber galls, strongly enhance, purified spores, highly contaminated

Relation: https://figshare.com/articles/dataset/Scripts_used_for_bioinformatic_analyses_/25207950

الاتاحة: https://doi.org/10.1371/journal.pone.0296842.s007
https://figshare.com/articles/dataset/Scripts_used_for_bioinformatic_analyses_/25207950

المؤلفون: Hai D. T. Nguyen, Ekaterina Ponomareva, Kasia Dadej, Donna Smith, Melissa Antoun, Theo A. J. van der Lee, Bart T. L. H. van de Vossenberg

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, target enrichment approach, sequenced bases mapped, obligate fungal pathogen, div >< p, based molecular detection, yielded sequencing data, samples generally results, potato wart disease, target enriched samples, enhancing genome sequencing, synchytrium endobioticum <, nuclear genome sequences, enriched samples, nuclear genome, illumina sequencing, potato host, genome assemblies, endobioticum <, valuable tool, tuber galls, strongly enhance, purified spores, highly contaminated

Relation: https://figshare.com/articles/dataset/Bait_sequences_/25207947

الاتاحة: https://doi.org/10.1371/journal.pone.0296842.s006
https://figshare.com/articles/dataset/Bait_sequences_/25207947

المؤلفون: Hai D. T. Nguyen, Ekaterina Ponomareva, Kasia Dadej, Donna Smith, Melissa Antoun, Theo A. J. van der Lee, Bart T. L. H. van de Vossenberg

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, target enrichment approach, sequenced bases mapped, obligate fungal pathogen, div >< p, based molecular detection, yielded sequencing data, samples generally results, potato wart disease, target enriched samples, enhancing genome sequencing, synchytrium endobioticum <, nuclear genome sequences, enriched samples, nuclear genome, illumina sequencing, potato host, genome assemblies, endobioticum <, valuable tool, tuber galls, strongly enhance, purified spores, highly contaminated

Relation: https://figshare.com/articles/figure/Correlation_of_the_percentages_of_bases_mapped_to_the_i_S_i_i_endobioticum_i_genome_and_C_sub_q_sub_value_of_non-enriched_samples_tested_/25207956

الاتاحة: https://doi.org/10.1371/journal.pone.0296842.g001
https://figshare.com/articles/figure/Correlation_of_the_percentages_of_bases_mapped_to_the_i_S_i_i_endobioticum_i_genome_and_C_sub_q_sub_value_of_non-enriched_samples_tested_/25207956

المؤلفون: Hai D. T. Nguyen, Ekaterina Ponomareva, Kasia Dadej, Donna Smith, Melissa Antoun, Theo A. J. van der Lee, Bart T. L. H. van de Vossenberg

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, target enrichment approach, sequenced bases mapped, obligate fungal pathogen, div >< p, based molecular detection, yielded sequencing data, samples generally results, potato wart disease, target enriched samples, enhancing genome sequencing, synchytrium endobioticum <, nuclear genome sequences, enriched samples, nuclear genome, illumina sequencing, potato host, genome assemblies, endobioticum <, valuable tool, tuber galls, strongly enhance, purified spores, highly contaminated

Relation: https://figshare.com/articles/dataset/Calculations_for_t-tests_/25207953

الاتاحة: https://doi.org/10.1371/journal.pone.0296842.s008
https://figshare.com/articles/dataset/Calculations_for_t-tests_/25207953

المؤلفون: Hai D. T. Nguyen, Ekaterina Ponomareva, Kasia Dadej, Donna Smith, Melissa Antoun, Theo A. J. van der Lee, Bart T. L. H. van de Vossenberg

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, target enrichment approach, sequenced bases mapped, obligate fungal pathogen, div >< p, based molecular detection, yielded sequencing data, samples generally results, potato wart disease, target enriched samples, enhancing genome sequencing, synchytrium endobioticum <, nuclear genome sequences, enriched samples, nuclear genome, illumina sequencing, potato host, genome assemblies, endobioticum <, valuable tool, tuber galls, strongly enhance, purified spores, highly contaminated

Relation: https://figshare.com/articles/figure/Violin_plots_showing_the_average_coverage_in_each_1000_bp_window_as_well_as_the_proportion_of_this_window_that_is_covered_by_at_least_one_read_in_non-enriched_and_target_enriched_samples_/25207959

الاتاحة: https://doi.org/10.1371/journal.pone.0296842.g002
https://figshare.com/articles/figure/Violin_plots_showing_the_average_coverage_in_each_1000_bp_window_as_well_as_the_proportion_of_this_window_that_is_covered_by_at_least_one_read_in_non-enriched_and_target_enriched_samples_/25207959