المؤلفون: Dawit A. Yohannes, Katri Kaukinen, Kalle Kurppa, Päivi Saavalainen, Dario Greco

المصدر: BMC Bioinformatics, Vol 22, Iss 1, Pp 1-21 (2021)

مصطلحات موضوعية: TCR differential abudance analysis, Celiac disease associated TCR clonotypes, Immune repertoire analysis, TCR repertoire analysis, Immuno-informatics, Antigen-specific TCR identification, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1471-2105

URL الوصول: https://doaj.org/article/8e7f150415f54117beec7e3a01ff5c82

المؤلفون: Yohannes, Dawit A., Kaukinen, Katri, Kurppa, Kalle, Saavalainen, Päivi, Greco, Dario

المساهمون: Immunobiology Research Program, Department of Medical and Clinical Genetics, University Management, Immunomics, Institute of Biotechnology

مصطلحات موضوعية: TCR differential abudance analysis, Celiac disease associated TCR clonotypes, Immune repertoire analysis, TCR repertoire analysis, Immuno-informatics, Antigen-specific TCR identification, Computational antigen-specificity identification, TCR clustering, Biochemistry, cell and molecular biology

وصف الملف: application/pdf

Relation: This work was supported by the Academy of Finland, European Commission (Marie Curie Excellence Grant);Sigrid Juselius Foundation; the Competitive State Research Financing of the Expert Area of Tampere University Hospital; and by SalWe Research Programs INTELLIGENT MONITORING and GET IT DONE funded by Tekes-the Finnish Funding Agency for Technology and Innovation. The funders had no role in the study design, data collection, analysis, interpretation, and final preparation of the manuscript.; Yohannes , D A , Kaukinen , K , Kurppa , K , Saavalainen , P & Greco , D 2021 , ' Clustering based approach for population level identification of condition-associated T-cell receptor beta-chain CDR3 sequences ' , BMC Bioinformatics , vol. 22 , no. 1 , 159 . https://doi.org/10.1186/s12859-021-04087-7; ORCID: /0000-0001-9195-9003/work/93604668; http://hdl.handle.net/10138/329744; 104a7cca-d675-47f8-8c11-fa89484eddc4; 000635210000006

الاتاحة: http://hdl.handle.net/10138/329744

المؤلفون: Dawit A. Yohannes (9757928), Katri Kaukinen (89195), Kalle Kurppa (469719), Päivi Saavalainen (89191), Dario Greco (10453804)

مصطلحات موضوعية: Immunology, TCR differential abudance analysis, Celiac disease associated TCR clonotypes, Immune repertoire analysis, TCR repertoire analysis, Immuno-informatics, Antigen-specific TCR identification, Computational antigen-specificity identification, TCR clustering

Relation: https://figshare.com/articles/journal_contribution/Additional_file_1_of_Clustering_based_approach_for_population_level_identification_of_condition-associated_T-cell_receptor_-chain_CDR3_sequences/14313826

الاتاحة: https://doi.org/10.6084/m9.figshare.14313826.v1

المؤلفون: Stefan Audehm, Manuel Glaser, Matteo Pecoraro, Eva Bräunlein, Sabine Mall, Richard Klar, Manuel Effenberger, Julian Albers, Henrique de Oliveira Bianchi, Janet Peper, Nahid Yusufi, Dirk H. Busch, Stefan Stevanović, Matthias Mann, Iris Antes, Angela M. Krackhardt

المصدر: Frontiers in Immunology, Vol 10 (2019)

مصطلحات موضوعية: T-cell receptor (TCR), peptide-MHC modeling (p-MHC modeling), adoptive T-cell transfer therapy, TCR cell therapy, TCR identification, TCR characterization, Immunologic diseases. Allergy, RC581-607

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fimmu.2019.01485/full; https://doaj.org/toc/1664-3224

URL الوصول: https://doaj.org/article/22a2a126e49249719ac2dc109a786b0d

المؤلفون: Karolin I. Wagner, Laura M. Mateyka, Sebastian Jarosch, Vincent Grass, Simone Weber, Kilian Schober, Monika Hammel, Teresa Burrell, Behnam Kalali, Holger Poppert, Henriette Beyer, Sophia Schambeck, Stefan Holdenrieder, Andrea Strötges-Achatz, Verena Haselmann, Michael Neumaier, Johanna Erber, Alina Priller, Sarah Yazici, Hedwig Roggendorf, Marcus Odendahl, Torsten Tonn, Andrea Dick, Klaus Witter, Hrvoje Mijočević, Ulrike Protzer, Percy A. Knolle, Andreas Pichlmair, Claudia S. Crowell, Markus Gerhard, Elvira D’Ippolito, Dirk H. Busch

المصدر: Cell Reports

مصطلحات موضوعية: Adult, Male, scRNA sequencing, TCR identification, Receptors, Antigen, T-Cell, Epitopes, T-Lymphocyte, chemical and pharmacologic phenomena, CD8-Positive T-Lymphocytes, Cross Reactions, CD8+ T cells, General Biochemistry, Genetics and Molecular Biology, Article, Humans, Cells, Cultured, T cell immunity, Immunodominant Epitopes, SARS-CoV-2, SARS-CoV-2 infection, cytotoxic T cells, COVID-19, mild COVID-19, TCR engineering, Spike Glycoprotein, Coronavirus, Leukocytes, Mononuclear, Female, T cell receptor, T-Lymphocytes, Cytotoxic

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5be085c35ae6e826ad2355160115156a
http://europepmc.org/articles/PMC8677487

المؤلفون: Yohannes, Dawit A, Kaukinen, Katri, Kurppa, Kalle, Saavalainen, Päivi, Greco, Dario

مصطلحات موضوعية: TCR differential abudance analysis, Celiac disease associated TCR clonotypes, Immune repertoire analysis, TCR repertoire analysis, Immuno-informatics, Antigen-specific TCR identification, Computational antigen-specificity identification, TCR clustering

وصف الملف: application/pdf

Relation: BMC Bioinformatics. 2021 Mar 25;22(1):159; http://hdl.handle.net/10138/328648

الاتاحة: http://hdl.handle.net/10138/328648

المؤلفون: Päivi Saavalainen, Dawit A. Yohannes, Dario Greco, Katri Kaukinen, Kalle Kurppa

المساهمون: Tampere University, Department of Internal medicine, Clinical Medicine, Department of Paediatrics, BioMediTech

المصدر: BMC Bioinformatics
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-21 (2021)

مصطلحات موضوعية: Receptors, Antigen, T-Cell, alpha-beta, T-Lymphocytes, Receptors, Antigen, T-Cell, chemical and pharmacologic phenomena, Immune receptor, Disease, Computational biology, Biology, lcsh:Computer applications to medicine. Medical informatics, ENCODE, Celiac disease associated TCR clonotypes, Immuno-informatics, 03 medical and health sciences, 0302 clinical medicine, Immune system, Antigen, Immune repertoire analysis, Subsequence, Cluster Analysis, Humans, Antigen-specific TCR identification, TCR clustering, Cluster analysis, lcsh:QH301-705.5, 030304 developmental biology, 0303 health sciences, 318 Medical biotechnology, Methodology Article, T-cell receptor, lcsh:Biology (General), lcsh:R858-859.7, TCR differential abudance analysis, Computational antigen-specificity identification, TCR repertoire analysis, 030215 immunology

وصف الملف: fulltext

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::79d097783abd3ef21fa10d9392657690
https://trepo.tuni.fi/handle/10024/132521

المؤلفون: Dawit A. Yohannes (9757928), Katri Kaukinen (89195), Kalle Kurppa (469719), Päivi Saavalainen (89191), Dario Greco (10453804)

مصطلحات موضوعية: Immunology, TCR differential abudance analysis, Celiac disease associated TCR clonotypes, Immune repertoire analysis, TCR repertoire analysis, Immuno-informatics, Antigen-specific TCR identification, Computational antigen-specificity identification, TCR clustering

Relation: https://figshare.com/articles/dataset/Additional_file_2_of_Clustering_based_approach_for_population_level_identification_of_condition-associated_T-cell_receptor_-chain_CDR3_sequences/14313829

الاتاحة: https://doi.org/10.6084/m9.figshare.14313829.v1

المؤلفون: Audehm, Stefan, Glaser, Manuel, Pecoraro, Matteo, Bräunlein, Eva, Mall, Sabine, Klar, Richard, Effenberger, Manuel, Albers, Julian, Bianchi, Henrique de Oliveira, Peper, Janet, Yusufi, Nahid, Busch, Dirk H., Stevanović, Stefan, Mann, Matthias, Antes, Iris, Krackhardt, Angela M.

المصدر: Frontiers in immunology
Frontiers in Immunology

مصطلحات موضوعية: trimolecular complex (TCR-p-MHC), Models, Molecular, TCR identification, Immunology, T-cell receptor (TCR), Receptors, Antigen, T-Cell, peptide-MHC modeling (p-MHC modeling), Mice, Transgenic, chemical and pharmacologic phenomena, TCR characterization, Cell Line, Major Histocompatibility Complex, HLA Antigens, Neoplasms, Animals, Cytokines, Humans, TCR cell therapy, target antigen characterization, adoptive T-cell transfer therapy, Peptides, Original Research, Peroxidase

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::a4fddc28827bf230571e6e9d672425cf
https://hdl.handle.net/21.11116/0000-0004-85EF-921.11116/0000-0004-85F1-5

المؤلفون: Stefan Audehm, Manuel Glaser, Matteo Pecoraro, Eva Bräunlein, Sabine Mall, Richard Klar, Manuel Effenberger, Julian Albers, Henrique de Oliveira Bianchi, Janet Peper, Nahid Yusufi, Dirk H. Busch, Stefan Stevanović, Matthias Mann, Iris Antes, Angela M. Krackhardt

مصطلحات موضوعية: Immunology, Applied Immunology (incl. Antibody Engineering, Xenotransplantation and T-cell Therapies), Autoimmunity, Cellular Immunology, Humoural Immunology and Immunochemistry, Immunogenetics (incl. Genetic Immunology), Innate Immunity, Transplantation Immunology, Tumour Immunology, Immunology not elsewhere classified, Genetic Immunology, Animal Immunology, Veterinary Immunology, T-cell receptor (TCR), peptide-MHC modeling (p-MHC modeling), adoptive T-cell transfer therapy, TCR cell therapy, TCR identification, TCR characterization, trimolecular complex (TCR-p-MHC), target antigen characterization

Relation: https://figshare.com/articles/dataset/Data_Sheet_1_Key_Features_Relevant_to_Select_Antigens_and_TCR_From_the_MHC-Mismatched_Repertoire_to_Treat_Cancer_docx/8343395

الاتاحة: https://doi.org/10.3389/fimmu.2019.01485.s001
https://figshare.com/articles/dataset/Data_Sheet_1_Key_Features_Relevant_to_Select_Antigens_and_TCR_From_the_MHC-Mismatched_Repertoire_to_Treat_Cancer_docx/8343395