المؤلفون: Sebastian Schmidt, Jarno N. Alanko

المصدر: Algorithms for Molecular Biology, Vol 18, Iss 1, Pp 1-21 (2023)

مصطلحات موضوعية: Spectrum preserving string sets, Eulerian cycle, Suffix tree, Bidirected arc-centric de Bruijn graph, K-mer based methods, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1748-7188

URL الوصول: https://doaj.org/article/2adedb00ad7f47d09c675a1b77b83a20

المؤلفون: Rahman, Amatur, Dufresne, Yoann, Medvedev, Paul

المساهمون: Pennsylvania State University (Penn State), Penn State System, Algorithmes pour les séquences biologiques - Sequence Bioinformatics, Institut Pasteur Paris (IP)-Université Paris Cité (UPCité), Hub Bioinformatique et Biostatistique - Bioinformatics and Biostatistics HUB, This material is based upon work supported by the National Science Foundation under grant nos. 2138585 and 1931531. Research reported in this publication was also supported by the National Institutes of Health under Grant NIH R01GM146462 (to P.M.). A.R. was supported by the National Institutes of Health Computation, Bioinformatics, and Statistics (CBIOS) training program.

المصدر: EISSN: 1868-8969 ; Leibniz International Proceedings in Informatics ; https://pasteur.hal.science/pasteur-04195997 ; Leibniz International Proceedings in Informatics , 273 (17), Schloss Dagstuhl - Leibniz-Zentrum für Informatik, pp.1-14, 2023, 978-3-95977-294-5. ⟨10.4230/LIPIcs.WABI.2023.17⟩

مصطلحات موضوعية: colored de Bruijn graphs, disk compression, k-mer sets, simplitigs, spectrum-preserving string sets, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], [INFO.INFO-DS]Computer Science [cs]/Data Structures and Algorithms [cs.DS]

الاتاحة: https://pasteur.hal.science/pasteur-04195997
https://pasteur.hal.science/pasteur-04195997v2/document
https://pasteur.hal.science/pasteur-04195997v2/file/LIPIcs-WABI-2023-17.pdf
https://doi.org/10.4230/LIPIcs.WABI.2023.17

المؤلفون: Schmidt, Sebastian, Alanko, Jarno N.

المساهمون: Sebastian Schmidt and Jarno N. Alanko

مصطلحات موضوعية: Spectrum preserving string sets, Eulerian cycle, Suffix tree, Bidirected arc-centric de Bruijn graph, k-mer based methods

وصف الملف: application/pdf

Relation: Is Part Of LIPIcs, Volume 242, 22nd International Workshop on Algorithms in Bioinformatics (WABI 2022); https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.2

الاتاحة: https://doi.org/10.4230/LIPIcs.WABI.2022.2
https://nbn-resolving.org/urn:nbn:de:0030-drops-170361
https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.2

المؤلفون: Amatur Rahman, Rayan Chikhi, Paul Medvedev

المصدر: Algorithms for Molecular Biology, Vol 16, Iss 1, Pp 1-14 (2021)

مصطلحات موضوعية: De Bruijn graphs, Compression, k-mer sets, Spectrum-preserving string sets, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1748-7188

URL الوصول: https://doaj.org/article/7126c47cc903415d9ed68f00ae1e8d99

المؤلفون: Pibiri, Giulio Ermanno, Shibuya, Yoshihiro, Limasset, Antoine

المساهمون: Centre National de la Recherche Scientifique (CNRS), Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 (CRIStAL), Centrale Lille-Université de Lille-Centre National de la Recherche Scientifique (CNRS)

المصدر: https://hal.science/hal-03832901 ; 2022.

مصطلحات موضوعية: Locality-Preserving, Minimal Perfect Hashing, Spectrum-Preserving String Sets, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]

Relation: hal-03832901; https://hal.science/hal-03832901; https://hal.science/hal-03832901/document; https://hal.science/hal-03832901/file/2210.13097.pdf

الاتاحة: https://hal.science/hal-03832901
https://hal.science/hal-03832901/document
https://hal.science/hal-03832901/file/2210.13097.pdf

المؤلفون: Rahman, Amatur, Chikhi, Rayan, Medvedev, Paul

المساهمون: Amatur Rahman and Rayan Chikhi and Paul Medvedev

مصطلحات موضوعية: de Bruijn graphs, compression, k-mer sets, spectrum-preserving string sets

وصف الملف: application/pdf

Relation: Is Part Of LIPIcs, Volume 172, 20th International Workshop on Algorithms in Bioinformatics (WABI 2020); https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.16

الاتاحة: https://doi.org/10.4230/LIPIcs.WABI.2020.16
https://nbn-resolving.org/urn:nbn:de:0030-drops-128057
https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.16

المؤلفون: Amatur Rahman and Yoann Dufresne and Paul Medvedev, Rahman, Amatur, Dufresne, Yoann, Medvedev, Paul

مصطلحات الفهرس: colored de Bruijn graphs, disk compression, k-mer sets, simplitigs, spectrum-preserving string sets, InProceedings, Text, doc-type:ResearchArticle, publishedVersion

URL: https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.17
Is Part Of LIPIcs, Volume 273, 23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)

المؤلفون: Sebastian Schmidt and Jarno N. Alanko, Schmidt, Sebastian, Alanko, Jarno N.

مصطلحات الفهرس: Spectrum preserving string sets, Eulerian cycle, Suffix tree, Bidirected arc-centric de Bruijn graph, k-mer based methods, InProceedings, Text, doc-type:ResearchArticle, publishedVersion

URL: https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.2
Is Part Of LIPIcs, Volume 242, 22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)