المؤلفون: Siddhartha G. Jena, Archit Verma, Barbara E. Engelhardt

المصدر: BMC Bioinformatics, Vol 25, Iss 1, Pp 1-25 (2024)

مصطلحات موضوعية: Spatial genomics, Biophysics, Cell biology, Machine learning, Statistical models, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1471-2105

URL الوصول: https://doaj.org/article/c47f14d9f2a2400c9f1dea624a803966

المؤلفون: Rongxin Fang, Aaron Halpern, Mohammed Mostafizur Rahman, Zhengkai Huang, Zhiyun Lei, Sebastian J Hell, Catherine Dulac, Xiaowei Zhuang

المصدر: eLife, Vol 12 (2024)

مصطلحات موضوعية: spatial genomics, MERFISH, brain, genome-scale imaging, thick-tissue imaging, spatial transcriptomics, Medicine, Science, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://elifesciences.org/articles/90029; https://doaj.org/toc/2050-084X

URL الوصول: https://doaj.org/article/ff4fc3e1dfbb4817851400bc2b11c40c

المؤلفون: Arman Angaji, Michel Owusu, Christoph Velling, Nicola Dick, Donate Weghorn, Johannes Berg

المصدر: eLife, Vol 13 (2024)

مصطلحات موضوعية: tumour samples, multi-region tumour samples, spatial genomics, Medicine, Science, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://elifesciences.org/articles/95338; https://doaj.org/toc/2050-084X

URL الوصول: https://doaj.org/article/ac5734ebe7a140aa8fb7d965a3a7ac93

المؤلفون: Xavier Devos, Jean-Bernard Fiche, Marion Bardou, Olivier Messina, Christophe Houbron, Julian Gurgo, Marie Schaeffer, Markus Götz, Thomas Walter, Florian Mueller, Marcelo Nollmann

المصدر: Genome Biology, Vol 25, Iss 1, Pp 1-11 (2024)

مصطلحات موضوعية: Spatial genomics, 3D chromatin structure, Transcription, Imaging, Bioimage informatics, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/71e8100ef7ff4548802e158a94de3b06

المؤلفون: Bæk, Ole, Schaltz-Buchholzer, Frederik, Campbell, Anita, Amenyogbe, Nelly, Campbell, James, Aaby, Peter, Benn, Christine Stabell, Kollmann, Tobias R.

المصدر: Bæk , O , Schaltz-Buchholzer , F , Campbell , A , Amenyogbe , N , Campbell , J , Aaby , P , Benn , C S & Kollmann , T R 2024 , ' The mark of success : The role of vaccine-induced skin scar formation for BCG and smallpox vaccine-associated clinical benefits ' , Seminars in Immunopathology , vol. 46 , no. 5 , 13 . https://doi.org/10.1007/s00281-024-01022-9

مصطلحات موضوعية: BCG, Dermoscopy, Maternal child health, Smallpox, Spatial genomics, Vaccine scar

وصف الملف: application/pdf

الاتاحة: https://researchprofiles.ku.dk/da/publications/the-mark-of-success(02df4520-119f-4c25-96fb-d50cd55018cd).html
https://doi.org/10.1007/s00281-024-01022-9
https://curis.ku.dk/ws/files/413849534/s00281_024_01022_9.pdf

المؤلفون: Xavier Devos, Jean-Bernard Fiche, Marion Bardou, Olivier Messina, Christophe Houbron, Julian Gurgo, Marie Schaeffer, Markus Götz, Thomas Walter, Florian Mueller, Marcelo Nollmann

مصطلحات موضوعية: Genetics, Spatial genomics, 3D chromatin structure, Transcription, Imaging, Bioimage informatics

Relation: https://figshare.com/articles/journal_contribution/Additional_file_1_of_pyHiM_a_new_open-source_multi-platform_software_package_for_spatial_genomics_based_on_multiplexed_DNA-FISH_imaging/25216808

الاتاحة: https://doi.org/10.6084/m9.figshare.25216808.v1
https://figshare.com/articles/journal_contribution/Additional_file_1_of_pyHiM_a_new_open-source_multi-platform_software_package_for_spatial_genomics_based_on_multiplexed_DNA-FISH_imaging/25216808

المؤلفون: Rozenblatt-Rosen, Orit, Regev, Aviv, Oberdoerffer, Philipp, Nawy, Tal, Hupalowska, Anna, Rood, Jennifer E, Ashenberg, Orr, Cerami, Ethan, Coffey, Robert J, Demir, Emek, Ding, Li, Esplin, Edward D, Ford, James M, Goecks, Jeremy, Ghosh, Sharmistha, Gray, Joe W, Guinney, Justin, Hanlon, Sean E, Hughes, Shannon K, Hwang, E Shelley, Iacobuzio-Donahue, Christine A, Jané-Valbuena, Judit, Johnson, Bruce E, Lau, Ken S, Lively, Tracy, Mazzilli, Sarah A, Pe'er, Dana, Santagata, Sandro, Shalek, Alex K, Schapiro, Denis, Snyder, Michael P, Sorger, Peter K, Spira, Avrum E, Srivastava, Sudhir, Tan, Kai, West, Robert B, Williams, Elizabeth H, Human Tumor Atlas Network

المصدر: Cell. 181(2)

مصطلحات موضوعية: Human Tumor Atlas Network, Humans, Neoplasms, Cell Transformation, Neoplastic, Genomics, Atlases as Topic, Single-Cell Analysis, Tumor Microenvironment, Precision Medicine, AI, Cancer Moonshot, Human Tumor Atlas, cancer transitions, data integration, data visualization, metastasis, pre-cancer, resistance, single-cell genomics, spatial genomics, spatial imaging, tumor, Human Genome, Clinical Research, Genetics, Cancer, Bioengineering, 2.1 Biological and endogenous factors, Aetiology, Good Health and Well Being, Biological Sciences, Medical and Health Sciences, Developmental Biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/4bn5n7sj
https://escholarship.org/content/qt4bn5n7sj/qt4bn5n7sj.pdf

المؤلفون: William Franz Lamberti, Chongzhi Zang

المصدر: Computational and Structural Biotechnology Journal, Vol 20, Iss , Pp 3387-3398 (2022)

مصطلحات موضوعية: 3D super-resolution imaging, Chromatin structure, Physical characteristics, Spatial genomics, Biotechnology, TP248.13-248.65

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S200103702200232X; https://doaj.org/toc/2001-0370

URL الوصول: https://doaj.org/article/be4ae760333b4daca5796b166ad49aa0

المؤلفون: Hosein M. Aziz, Lawlaw Saida, Willem de Koning, Andrew P. Stubbs, Yunlei Li, Kostandinos Sideras, Elena Palacios, Jaime Feliu, Marta Mendiola, Casper H. J. van Eijck, Dana A. M. Mustafa

المصدر: Frontiers in Immunology, Vol 13 (2023)

مصطلحات موضوعية: pancreatic ductal adenocarcinoma, long-term survival, B cells, tumor immune microenvironment, gene expression, spatial genomics, Immunologic diseases. Allergy, RC581-607

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2022.995715/full; https://doaj.org/toc/1664-3224

URL الوصول: https://doaj.org/article/a2510d7e94c741e6b448b4f90db688fc

المؤلفون: Ana J Caetano, Yushi Redhead, Farah Karim, Pawan Dhami, Shichina Kannambath, Rosamond Nuamah, Ana A Volponi, Luigi Nibali, Veronica Booth, Eleanor M D'Agostino, Paul T Sharpe

المصدر: eLife, Vol 12 (2023)

مصطلحات موضوعية: gingiva, fibroblast, inflammation, oral mucosa, spatial genomics, periodontal disease, Medicine, Science, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://elifesciences.org/articles/81525; https://doaj.org/toc/2050-084X

URL الوصول: https://doaj.org/article/105b57a35fca41bebab8a5eadcd7aa68

المؤلفون: Dongyuan Song, Qingyang Wang, Jingyi Jessica Li

مصطلحات موضوعية: single cell, spatial genomics, simulator

Relation: https://doi.org/10.5281/zenodo.7110761; https://doi.org/10.5281/zenodo.7750930; oai:zenodo.org:7750930

الاتاحة: https://doi.org/10.5281/zenodo.7750930

المؤلفون: Martin Nwadiugwu, Hui Shen, Hong-Wen Deng

المصدر: Biology; Volume 12; Issue 4; Pages: 602

مصطلحات موضوعية: Alzheimer’s disease, molecular mechanisms, single-cell transcriptomics, spatial genomics

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Neuroscience; https://dx.doi.org/10.3390/biology12040602

الاتاحة: https://doi.org/10.3390/biology12040602

المؤلفون: Wang M, Gu M, Liu L, Liu Y, Tian L

المصدر: Vascular Health and Risk Management, Vol Volume 17, Pp 641-657 (2021)

مصطلحات موضوعية: cardiovascular diseases, clustering, trajectory inference, rna velocity, cell-cell communication, spatial genomics, Diseases of the circulatory (Cardiovascular) system, RC666-701

وصف الملف: electronic resource

Relation: https://www.dovepress.com/single-cell-rna-sequencing-scrna-seq-in-cardiac-tissue-applications-an-peer-reviewed-fulltext-article-VHRM; https://doaj.org/toc/1178-2048

URL الوصول: https://doaj.org/article/5342c44993204355946f8a13447e05d7

المؤلفون: Daniel E. Millian, Omar A. Saldarriaga, Timothy Wanninger, Jared K. Burks, Yousef N. Rafati, Joseph Gosnell, Heather L. Stevenson

المصدر: Cancers; Volume 14; Issue 8; Pages: 1861

مصطلحات موضوعية: cancer, CyTOF, HCC, liver, macrophages, spectral imaging, hepatic microenvironment, TAMs, TME, spatial genomics, scRNA-seq

وصف الملف: application/pdf

Relation: https://dx.doi.org/10.3390/cancers14081861

الاتاحة: https://doi.org/10.3390/cancers14081861

المؤلفون: Dongyuan Song, Qingyang Wang, Jingyi Jessica Li

مصطلحات موضوعية: single cell, spatial genomics, simulator

Relation: https://doi.org/10.5281/zenodo.7110761; https://doi.org/10.5281/zenodo.7110762; oai:zenodo.org:7110762

الاتاحة: https://doi.org/10.5281/zenodo.7110762

المؤلفون: Mollaoglu, Gurkan, Tepper, Alexander, Falcomatà, Chiara, Potak, Hunter T, Pia, Luisanna, Amabile, Angelo, Mateus-Tique, Jaime, Rabinovich, Noam, Park, Matthew D, LaMarche, Nelson M, Brody, Rachel, Browning, Lindsay, Lin, Jia-Ren, Zamarin, Dmitriy, Sorger, Peter K, Santagata, Sandro, Merad, Miriam, Baccarini, Alessia, Brown, Brian D

المصدر: Cell ; ISSN:1097-4172 ; Volume:187 ; Issue:26

مصطلحات موضوعية: CCL7, IL-4, Perturb-map, immunotherapy, intratumoral heterogeneity, macrophages, multiplex imaging, ovarian cancer, spatial CRISPR screens, spatial genomics, tumor immunology, tumor microenvironment, tumor neighborhood, type 2 immunity

Relation: https://doi.org/10.1016/j.cell.2024.10.006; https://pubmed.ncbi.nlm.nih.gov/39481380; https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11682930/

الاتاحة: https://doi.org/10.1016/j.cell.2024.10.006
https://pubmed.ncbi.nlm.nih.gov/39481380
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11682930/

المؤلفون: Tarabichi, Maxime, Demetter, Pieter, Ruscas-Craciun, Ligia Ioana, Maenhaut, Carine, Detours, Vincent

المصدر: Molecular and cellular endocrinology, 541

مصطلحات موضوعية: Sciences bio-médicales et agricoles, Artificial intelligence, Immunotherapy, Long-read sequencing, Single cell omics, Spatial genomics, Thyroid cancer

وصف الملف: 2 full-text file(s): application/pdf | application/pdf

Relation: uri/info:doi/10.1016/j.mce.2021.111491; uri/info:pii/S0303-7207(21)00335-X; uri/info:pmid/34740746; uri/info:scp/85118659957; https://dipot.ulb.ac.be/dspace/bitstream/2013/334395/1/elsevier_318039.pdf; https://dipot.ulb.ac.be/dspace/bitstream/2013/334395/5/Thyroid_cancer_emerging_questions.pdf; http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/334395

الاتاحة: http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/334395
https://dipot.ulb.ac.be/dspace/bitstream/2013/334395/1/elsevier_318039.pdf
https://dipot.ulb.ac.be/dspace/bitstream/2013/334395/5/Thyroid_cancer_emerging_questions.pdf

المؤلفون: Yubao Cheng (11667061), Miao Liu (148274), Mengwei Hu (2276713), Siyuan Wang (11667064)

مصطلحات موضوعية: Genetics, Topologically associating domain (TAD), TAD-like structure, Single-cell domain, X chromosome, X inactivation, Chromatin folding, Chromatin compaction, Image-based spatial genomics, 3D genomics, Chromatin tracing, Multiplexed sequential fluorescence in situ hybridization (FISH)

Relation: https://figshare.com/articles/journal_contribution/Additional_file_1_of_TAD-like_single-cell_domain_structures_exist_on_both_active_and_inactive_X_chromosomes_and_persist_under_epigenetic_perturbations/16960657

الاتاحة: https://doi.org/10.6084/m9.figshare.16960657.v1

المؤلفون: Yubao Cheng (11667061), Miao Liu (148274), Mengwei Hu (2276713), Siyuan Wang (11667064)

مصطلحات موضوعية: Genetics, Topologically associating domain (TAD), TAD-like structure, Single-cell domain, X chromosome, X inactivation, Chromatin folding, Chromatin compaction, Image-based spatial genomics, 3D genomics, Chromatin tracing, Multiplexed sequential fluorescence in situ hybridization (FISH)

Relation: https://figshare.com/articles/journal_contribution/Additional_file_7_of_TAD-like_single-cell_domain_structures_exist_on_both_active_and_inactive_X_chromosomes_and_persist_under_epigenetic_perturbations/16960675

الاتاحة: https://doi.org/10.6084/m9.figshare.16960675.v1

المؤلفون: Sreemol Gokuladhas

مصطلحات موضوعية: Genome structure and regulation, Neurology and neuromuscular diseases, Gene regulatory Networks, eQTL gene expression, Spatial genomics, tissue-specific gene regulation

Relation: https://figshare.com/articles/dataset/Supplementary_Data_1/26132503

الاتاحة: https://doi.org/10.17608/k6.auckland.26132503.v1
https://figshare.com/articles/dataset/Supplementary_Data_1/26132503