المؤلفون: Afonine, Pavel, Sobolev, Oleg, Terwilliger, Thomas, Moriarty, Nigel, Adams, Paul

المصدر: Acta Crystallographica Section D: Structural Biology. 79(Pt 8)

مصطلحات موضوعية: atomic model refinement, cryo-EM, crystallography, hydrogen bonds, validation, Hydrogen Bonding, Crystallography, X-Ray, Models, Molecular, Proteins, Hydrogen, Protein Conformation

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/6jv79333
https://escholarship.org/content/qt6jv79333/qt6jv79333.pdf

المؤلفون: Westbrook, John D, Young, Jasmine Y, Shao, Chenghua, Feng, Zukang, Guranovic, Vladimir, Lawson, Catherine L, Vallat, Brinda, Adams, Paul D, Berrisford, John M, Bricogne, Gerard, Diederichs, Kay, Joosten, Robbie P, Keller, Peter, Moriarty, Nigel W, Sobolev, Oleg V, Velankar, Sameer, Vonrhein, Clemens, Waterman, David G, Kurisu, Genji, Berman, Helen M, Burley, Stephen K, Peisach, Ezra

المصدر: Journal of molecular biology. 434(11)

مصطلحات موضوعية: Macromolecular Substances, Crystallography, Computational Biology, Molecular Biology, Protein Conformation, Semantics, Software, Databases, Protein, biological data, data management, data standard, macromolecular structure, protein data bank, Bioengineering, Networking and Information Technology R&D (NITRD), 1.5 Resources and infrastructure (underpinning), Underpinning research, Generic health relevance, Medicinal and Biomolecular Chemistry, Biochemistry and Cell Biology, Microbiology, Biochemistry & Molecular Biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/1003b5z6
https://escholarship.org/content/qt1003b5z6/qt1003b5z6.pdf

المؤلفون: van Zundert, Gydo CP, Moriarty, Nigel W, Sobolev, Oleg V, Adams, Paul D, Borrelli, Kenneth W

المصدر: Structure (London, England : 1993). 29(8)

مصطلحات موضوعية: Macromolecular Substances, Proteins, Ligands, Cryoelectron Microscopy, Crystallography, X-Ray, Software, cryoelectron microscopy, force field, ligand placement, overfitting, real-space refinement, reciprocal space refinement, Bioengineering, Chemical Sciences, Biological Sciences, Information and Computing Sciences, Biophysics

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2v21391b

المؤلفون: Terwilliger, Thomas C, Sobolev, Oleg V, Afonine, Pavel V, Adams, Paul D, Ho, Chi-Min, Li, Xiaorun, Zhou, Z Hong

المصدر: Acta Crystallographica Section D, Structural Biology. 77(4)

مصطلحات موضوعية: Biochemistry and Cell Biology, Physical Sciences, Biological Sciences, 1.1 Normal biological development and functioning, Generic health relevance, Cryoelectron Microscopy, Models, Molecular, Protein Conformation, Proteins, Software, cryo-EM, structural biology, model building, map interpretation

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/67k783vf
https://escholarship.org/content/qt67k783vf/qt67k783vf.pdf

المؤلفون: Lawson, Catherine L., Kryshtafovych, Andriy, Pintilie, Grigore D., Burley, Stephen K., Černý, Jiří, Chen, Vincent B., Emsley, Paul, Gobbi, Alberto, Joachimiak, Andrzej, Noreng, Sigrid, Prisant, Michael G., Read, Randy J., Richardson, Jane S., Rohou, Alexis L., Schneider, Bohdan, Sellers, Benjamin D., Shao, Chenghua, Sourial, Elizabeth, Williams, Chris I., Williams, Christopher J., Yang, Ying, Abbaraju, Venkat, Afonine, Pavel V., Baker, Matthew L., Bond, Paul S., Blundell, Tom L., Burnley, Tom, Campbell, Arthur, Cao, Renzhi, Cheng, Jianlin, Chojnowski, Grzegorz, Cowtan, K. D., DiMaio, Frank, Esmaeeli, Reza, Giri, Nabin, Grubmüller, Helmut, Hoh, Soon Wen, Hou, Jie, Hryc, Corey F., Hunte, Carola, Igaev, Maxim, Joseph, Agnel P., Kao, Wei Chun, Kihara, Daisuke, Kumar, Dilip, Lang, Lijun, Lin, Sean, Maddhuri Venkata Subramaniya, Sai R., Mittal, Sumit, Mondal, Arup, Moriarty, Nigel W., Muenks, Andrew, Murshudov, Garib N., Nicholls, Robert A., Olek, Mateusz, Palmer, Colin M., Perez, Alberto, Pohjolainen, Emmi, Pothula, Karunakar R., Rowley, Christopher N., Sarkar, Daipayan, Schäfer, Luisa U., Schlicksup, Christopher J., Schröder, Gunnar F., Shekhar, Mrinal, Si, Dong, Singharoy, Abhishek, Sobolev, Oleg V., Terashi, Genki, Vaiana, Andrea C., Vedithi, Sundeep C., Verburgt, Jacob, Wang, Xiao, Warshamanage, Rangana, Winn, Martyn D., Weyand, Simone, Yamashita, Keitaro, Zhao, Minglei, Schmid, Michael F., Berman, Helen M., Chiu, Wah

المصدر: Lawson , C L , Kryshtafovych , A , Pintilie , G D , Burley , S K , Černý , J , Chen , V B , Emsley , P , Gobbi , A , Joachimiak , A , Noreng , S , Prisant , M G , Read , R J , Richardson , J S , Rohou , A L , Schneider , B , Sellers , B D , Shao , C , Sourial , E , Williams , C I , Williams , C J , Yang , Y , Abbaraju , V , ....

مصطلحات موضوعية: /dk/atira/pure/subjectarea/asjc/1300/1305, name=Biotechnology, /dk/atira/pure/subjectarea/asjc/1300/1303, name=Biochemistry, /dk/atira/pure/subjectarea/asjc/1300/1312, name=Molecular Biology, /dk/atira/pure/subjectarea/asjc/1300/1307, name=Cell Biology

وصف الملف: application/pdf

الاتاحة: https://discovery.dundee.ac.uk/en/publications/96d7ee46-f562-4e6b-bef7-cf75296e3ec3
https://doi.org/10.1038/s41592-024-02321-7
https://discovery.dundee.ac.uk/ws/files/139975318/Nature_Methods-Revised_APRIL_2024_GDOC.pdf
http://www.scopus.com/inward/record.url?scp=85196858277&partnerID=8YFLogxK

المؤلفون: Lawson, Catherine L, Kryshtafovych, Andriy, Pintilie, Grigore D, Burley, Stephen K, Černý, Jiří, Chen, Vincent B, Emsley, Paul, Gobbi, Alberto, Joachimiak, Andrzej, Noreng, Sigrid, Prisant, Michael G, Read, Randy J, Richardson, Jane S, Rohou, Alexis L, Schneider, Bohdan, Sellers, Benjamin D, Shao, Chenghua, Sourial, Elizabeth, Williams, Chris I, Williams, Christopher J, Yang, Ying, Abbaraju, Venkat, Afonine, Pavel V, Baker, Matthew L, Bond, Paul S, Blundell, Tom L, Burnley, Tom, Campbell, Arthur, Cao, Renzhi, Cheng, Jianlin, Chojnowski, Grzegorz, Cowtan, KD, DiMaio, Frank, Esmaeeli, Reza, Giri, Nabin, Grubmüller, Helmut, Hoh, Soon Wen, Hou, Jie, Hryc, Corey F, Hunte, Carola, Igaev, Maxim, Joseph, Agnel P, Kao, Wei-Chun, Kihara, Daisuke, Kumar, Dilip, Lang, Lijun, Lin, Sean, Maddhuri Venkata Subramaniya, Sai R, Mittal, Sumit, Mondal, Arup, Moriarty, Nigel W, Muenks, Andrew, Murshudov, Garib N, Nicholls, Robert A, Olek, Mateusz, Palmer, Colin M, Perez, Alberto, Pohjolainen, Emmi, Pothula, Karunakar R, Rowley, Christopher N, Sarkar, Daipayan, Schäfer, Luisa U, Schlicksup, Christopher J, Schröder, Gunnar F, Shekhar, Mrinal, Si, Dong, Singharoy, Abhishek, Sobolev, Oleg V, Terashi, Genki, Vaiana, Andrea C, Vedithi, Sundeep C, Verburgt, Jacob, Wang, Xiao, Warshamanage, Rangana, Winn, Martyn D, Weyand, Simone, Yamashita, Keitaro, Zhao, Minglei, Schmid, Michael F, Berman, Helen M, Chiu, Wah

مصطلحات موضوعية: Cryoelectron Microscopy, Ligands, Models, Molecular, SARS-CoV-2, COVID-19, Escherichia coli, beta-Galactosidase, Protein Conformation, Reproducibility of Results

وصف الملف: Print-Electronic; application/pdf

Relation: https://www.repository.cam.ac.uk/handle/1810/371179; https://doi.org/10.17863/CAM.110447

الاتاحة: https://www.repository.cam.ac.uk/handle/1810/371179
https://doi.org/10.17863/CAM.110447

المؤلفون: Sobolev, Oleg V, Afonine, Pavel V, Moriarty, Nigel W, Hekkelman, Maarten L, Joosten, Robbie P, Perrakis, Anastassis, Adams, Paul D

المصدر: Structure. 28(11)

مصطلحات موضوعية: Biochemistry and Cell Biology, Biological Sciences, Generic health relevance, Algorithms, Bias, Cryoelectron Microscopy, Crystallography, X-Ray, Databases, Protein, Humans, Models, Molecular, Protein Conformation, alpha-Helical, Protein Conformation, beta-Strand, Proteins, Software, CCTBX, PDB-REDO, Phenix, Rama-Z, Ramachandran plot, Z score, cryo-EM, crystallography, validation, Chemical Sciences, Information and Computing Sciences, Biophysics, Biological sciences, Chemical sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/69s849mv
https://escholarship.org/content/qt69s849mv/qt69s849mv.pdf

المؤلفون: Terwilliger, Thomas C, Sobolev, Oleg V, Afonine, Pavel V, Adams, Paul D, Read, Randy J

المصدر: Acta Crystallographica Section D, Structural Biology. 76(10)

مصطلحات موضوعية: Biological Sciences, Chemical Sciences, Physical Sciences, Apoferritins, Cryoelectron Microscopy, Humans, Macromolecular Substances, Models, Molecular, Protein Conformation, Solvents, electron cryomicroscopy, structural biology, map improvement, density modification

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/8sc7615f
https://escholarship.org/content/qt8sc7615f/qt8sc7615f.pdf

المؤلفون: van Zundert, Gydo CP, Moriarty, Nigel, Sobolev, Oleg, Adams, Paul, Borrelli, Kenneth

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2q23s6r4

المؤلفون: Čermák, Petr, Schneidewind, Astrid, Liu, Benqiong, Koza, Michael Marek, Franz, Christian, Schönmann, Rudolf, Sobolev, Oleg, Pfleiderer, Christian

المصدر: Proc. Natl. Acad. Sci. U.S.A. 116 (2019) 6695-6700

مصطلحات موضوعية: Condensed Matter - Strongly Correlated Electrons, Condensed Matter - Materials Science

URL الوصول: http://arxiv.org/abs/1812.01020

المؤلفون: Terwilliger, Thomas C, Adams, Paul D, Afonine, Pavel V, Sobolev, Oleg V

المصدر: Protein Science. 29(1)

مصطلحات موضوعية: Biochemistry and Cell Biology, Biological Sciences, Computational Biology, Cryoelectron Microscopy, Models, Molecular, Protein Interaction Mapping, Protein Structure, Secondary, Proteins, Software, cryo-electron microscopy, map interpretation, map segmentation, model-building, Computation Theory and Mathematics, Other Information and Computing Sciences, Biophysics, Biochemistry and cell biology, Medicinal and biomolecular chemistry

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/0t48x23w
https://escholarship.org/content/qt0t48x23w/qt0t48x23w.pdf

المؤلفون: Liebschner, Dorothee, Afonine, Pavel V, Baker, Matthew L, Bunkóczi, Gábor, Chen, Vincent B, Croll, Tristan I, Hintze, Bradley, Hung, Li Wei, Jain, Swati, McCoy, Airlie J, Moriarty, Nigel W, Oeffner, Robert D, Poon, Billy K, Prisant, Michael G, Read, Randy J, Richardson, Jane S, Richardson, David C, Sammito, Massimo D, Sobolev, Oleg V, Stockwell, Duncan H, Terwilliger, Thomas C, Urzhumtsev, Alexandre G, Videau, Lizbeth L, Williams, Christopher J, Adams, Paul D

المصدر: Acta crystallographica. Section D, Structural biology. 75(Pt 10)

مصطلحات موضوعية: Macromolecular Substances, Cryoelectron Microscopy, Crystallography, X-Ray, Molecular Conformation, Models, Molecular, Automation, Software Design, Software Validation, C++, Phenix, Python, X-rays, automation, cctbx, cryo-EM, diffraction, macromolecular crystallography, neutrons, C plus plus, Crystallography, X-Ray, Models, Molecular, Generic Health Relevance

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/4f55w41k

المؤلفون: Kim, Doo Nam, Moriarty, Nigel W, Kirmizialtin, Serdal, Afonine, Pavel V, Poon, Billy, Sobolev, Oleg V, Adams, Paul D, Sanbonmatsu, Karissa

المصدر: Journal of Structural Biology. 208(1)

مصطلحات موضوعية: Biochemistry and Cell Biology, Biological Sciences, Bioengineering, Networking and Information Technology R&D (NITRD), 1.1 Normal biological development and functioning, Generic health relevance, Cryoelectron Microscopy, Molecular Dynamics Simulation, Protein Conformation, Software, Cryo-EM, Molecular dynamics, Flexible fitting, Correlation coefficient, Phenix, Zoology, Biophysics, Biochemistry and cell biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/9vn7d3db
https://escholarship.org/content/qt9vn7d3db/qt9vn7d3db.pdf

المؤلفون: Čermák, Petr, Schneidewind, Astrid, Liu, Benqiong, Koza, Michael Marek, Franz, Christian, Schönmann, Rudolf, Sobolev, Oleg, Pfleiderer, Christian

المصدر: Proceedings of the National Academy of Sciences of the United States of America. 116(14)

مصطلحات موضوعية: magneto-elastic coupling, f-electron materials, neutron spectroscopy, Kondo lattice materials, crystal electric field, cond-mat.str-el, cond-mat.mtrl-sci

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/3607p697

المؤلفون: Adams, Paul D, Afonine, Pavel V, Baskaran, Kumaran, Berman, Helen M, Berrisford, John, Bricogne, Gerard, Brown, David G, Burley, Stephen K, Chen, Minyu, Feng, Zukang, Flensburg, Claus, Gutmanas, Aleksandras, Hoch, Jeffrey C, Ikegawa, Yasuyo, Kengaku, Yumiko, Krissinel, Eugene, Kurisu, Genji, Liang, Yuhe, Liebschner, Dorothee, Mak, Lora, Markley, John L, Moriarty, Nigel W, Murshudov, Garib N, Noble, Martin, Peisach, Ezra, Persikova, Irina, Poon, Billy K, Sobolev, Oleg V, Ulrich, Eldon L, Velankar, Sameer, Vonrhein, Clemens, Westbrook, John, Wojdyr, Marcin, Yokochi, Masashi, Young, Jasmine Y

المصدر: Acta Crystallographica Section D, Structural Biology. 75(4)

مصطلحات موضوعية: Biochemistry and Cell Biology, Biological Sciences, Crystallography, X-Ray, Database Management Systems, Databases, Protein, Humans, Protein Conformation, Proteins, Software, PDB, mmCIF, OneDep, wwPDB, data dictionary, data archiving, biocuration, validation, macromolecular crystallography, data standards, PDBx, mmCIF format, Protein Data Bank, Worldwide Protein Data Bank, PDBx/mmCIF format

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2kh8n7dd
https://escholarship.org/content/qt2kh8n7dd/qt2kh8n7dd.pdf

المؤلفون: Terwilliger, Thomas C, Adams, Paul D, Afonine, Pavel V, Sobolev, Oleg V

المصدر: Journal of Structural Biology. 204(2)

مصطلحات موضوعية: Biochemistry and Cell Biology, Biological Sciences, 2.1 Biological and endogenous factors, Generic health relevance, Cryoelectron Microscopy, Protein Conformation, Protein Structure, Secondary, Electron cryo-rnicroscopy, Model-building, Map segmentation, Electron cryo-microscopy, Zoology, Biophysics, Biochemistry and cell biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/4rr9c5rh
https://escholarship.org/content/qt4rr9c5rh/qt4rr9c5rh.pdf

المؤلفون: Terwilliger, Thomas C, Adams, Paul D, Afonine, Pavel V, Sobolev, Oleg V

المصدر: Nature Methods. 15(11)

مصطلحات موضوعية: Biological Sciences, Generic health relevance, Cryoelectron Microscopy, Humans, Models, Molecular, Protein Conformation, RNA, RNA-Binding Proteins, Ribosomes, Technology, Medical and Health Sciences, Developmental Biology, Biological sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/7tv065s4
https://escholarship.org/content/qt7tv065s4/qt7tv065s4.pdf

المؤلفون: Afonine, Pavel V, Klaholz, Bruno P, Moriarty, Nigel W, Poon, Billy K, Sobolev, Oleg V, Terwilliger, Thomas C, Adams, Paul D, Urzhumtsev, Alexandre

المصدر: Acta crystallographica. Section D, Structural biology. 74(Pt 9)

مصطلحات موضوعية: Humans, Proteins, Cryoelectron Microscopy, Crystallography, X-Ray, Protein Conformation, Models, Molecular, Software, Databases, Protein, atomic models, cryo-EM, data quality, model quality, resolution, validation, Crystallography, X-Ray, Models, Molecular, Databases, Protein, Networking and Information Technology R&D

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/7372z9hx

المؤلفون: Afonine, Pavel V, Poon, Billy K, Read, Randy J, Sobolev, Oleg V, Terwilliger, Thomas C, Urzhumtsev, Alexandre, Adams, Paul D

المصدر: Acta Crystallographica Section D, Structural Biology. 74(6)

مصطلحات موضوعية: Animals, Computer Simulation, Cryoelectron Microscopy, Crystallography, Databases, Protein, Humans, Macromolecular Substances, Models, Molecular, Software, TRPV Cation Channels, Validation Studies as Topic, real-space refinement, cryo-EM, crystallography, map interpolation, atomic-centered targets, PHENIX

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/97f877th
https://escholarship.org/content/qt97f877th/qt97f877th.pdf

المؤلفون: Terwilliger, Thomas C, Sobolev, Oleg V, Afonine, Pavel V, Adams, Paul D

المصدر: Acta Crystallographica Section D, Structural Biology. 74(6)

مصطلحات موضوعية: Algorithms, Animals, Antigens, Bacterial, Bacterial Proteins, Bacterial Toxins, Connexins, Cryoelectron Microscopy, Crystallography, X-Ray, Fourier Analysis, Humans, Models, Molecular, TRPV Cation Channels, cryo-electron microscopy, X-ray crystallography, map interpretation, map sharpening

URL الوصول: https://escholarship.org/uc/item/5wz9m4hw