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1Report
المؤلفون: Eastman, Peter, Galvelis, Raimondas, Peláez, Raúl P., Abreu, Charlles R. A., Farr, Stephen E., Gallicchio, Emilio, Gorenko, Anton, Henry, Michael M., Hu, Frank, Huang, Jing, Krämer, Andreas, Michel, Julien, Mitchell, Joshua A., Pande, Vijay S., Rodrigues, João PGLM, Rodriguez-Guerra, Jaime, Simmonett, Andrew C., Swails, Jason, Zhang, Ivy, Chodera, John D., De Fabritiis, Gianni, Markland, Thomas E.
مصطلحات موضوعية: Physics - Chemical Physics, Computer Science - Machine Learning, J.2, J.3
URL الوصول: http://arxiv.org/abs/2310.03121
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2Academic Journal
المؤلفون: Smith, Daniel GA, Lolinco, Annabelle T, Glick, Zachary L, Lee, Jiyoung, Alenaizan, Asem, Barnes, Taylor A, Borca, Carlos H, Di Remigio, Roberto, Dotson, David L, Ehlert, Sebastian, Heide, Alexander G, Herbst, Michael F, Hermann, Jan, Hicks, Colton B, Horton, Joshua T, Hurtado, Adrian G, Kraus, Peter, Kruse, Holger, Lee, Sebastian JR, Misiewicz, Jonathon P, Naden, Levi N, Ramezanghorbani, Farhad, Scheurer, Maximilian, Schriber, Jeffrey B, Simmonett, Andrew C, Steinmetzer, Johannes, Wagner, Jeffrey R, Ward, Logan, Welborn, Matthew, Altarawy, Doaa, Anwar, Jamshed, Chodera, John D, Dreuw, Andreas, Kulik, Heather J, Liu, Fang, Martínez, Todd J, Matthews, Devin A, Schaefer, Henry F, Šponer, Jiří, Turney, Justin M, Wang, Lee-Ping, De Silva, Nuwan, King, Rollin A, Stanton, John F, Gordon, Mark S, Windus, Theresa L, Sherrill, C David, Burns, Lori A
المصدر: The Journal of Chemical Physics. 155(20)
مصطلحات موضوعية: Networking and Information Technology R&D (NITRD), Physical Sciences, Chemical Sciences, Engineering, Chemical Physics
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/4h8041v9
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3Academic Journal
المؤلفون: Hwang, Wonmuk, Austin, Steven L., Blondel, Arnaud, Boittier, Eric D., Boresch, Stefan, Buck, Matthias, Buckner, Joshua, Caflisch, Amedeo, Chang, Hao-Ting, Cheng, Xi, Choi, Yeol Kyo, Chu, Jhih-Wei, Crowley, Michael F., Cui, Qiang, Damjanovic, Ana, Deng, Yuqing, Devereux, Mike, Ding, Xinqiang, Feig, Michael F., Gao, Jiali, Glowacki, David R., Gonzales, James E., II, Hamaneh, Mehdi Bagerhi, Harder, Edward D., Hayes, Ryan L., Huang, Jing, Huang, Yandong, Hudson, Phillip S., Im, Wonpil, Islam, Shahidul M., Jiang, Wei, Jones, Michael R., Käser, Silvan, Kearns, Fiona L., Kern, Nathan R., Klauda, Jeffery B., Lazaridis, Themis, Lee, Jinhyuk, Lemkul, Justin A., Liu, Xiaorong, Luo, Yun, MacKerell, Alexander D., Jr., Major, Dan T., Meuwly, Markus, Nam, Kwangho, Nilsson, Lennart, Ovchinnikov, Victor, Paci, Emanuele, Park, Soohyung, Pastor, Richard W., Pittman, Amanda R., Post, Carol Beth, Prasad, Samarjeet, Pu, Jingzhi, Qi, Yifei, Rathinavelan, Thenmalarchelvi, Roe, Daniel R., Roux, Benoit, Rowley, Christopher N., Shen, Jana, Simmonett, Andrew C., Sodt, Alexander J., Töpfer, Kai, Upadhyay, Meenu, van der Vaart, Arjan, Vazquez-Salazar, Luis Itza, Venable, Richard M., Warrensford, Luke C., Woodcock, H. Lee, Wu, Yujin, Brooks, Charles L., III, Brooks, Bernard R., Karplus, Martin
المساهمون: Chemistry and Chemical Biology, School of Science
المصدر: PMC
مصطلحات موضوعية: Molecular dynamics simulation, Quantum theory, Software
وصف الملف: application/pdf
Relation: The Journal of Physical Chemistry: B; https://hdl.handle.net/1805/44452
الاتاحة: https://hdl.handle.net/1805/44452
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4Academic Journal
المؤلفون: Nochebuena, Jorge1 (AUTHOR), Simmonett, Andrew C.2 (AUTHOR), Cisneros, G. Andrés1,3 (AUTHOR) andres@utdallas.edu
المصدر: Journal of Chemical Physics. 5/7/2024, Vol. 160 Issue 17, p1-12. 12p.
مصطلحات موضوعية: *COMPUTATIONAL chemistry, *QUANTUM mechanics, *CONDENSED matter, *ASPARTIC acid, *MOLECULAR interactions
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5Academic Journal
المؤلفون: Eastman, Peter, Swails, Jason, Chodera, John D, McGibbon, Robert T, Zhao, Yutong, Beauchamp, Kyle A, Wang, Lee-Ping, Simmonett, Andrew C, Harrigan, Matthew P, Stern, Chaya D, Wiewiora, Rafal P, Brooks, Bernard R, Pande, Vijay S
المصدر: PLoS computational biology. 13(7)
مصطلحات موضوعية: Computational Biology, Algorithms, Software, Molecular Dynamics Simulation, Mathematical Sciences, Biological Sciences, Information and Computing Sciences, Bioinformatics
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/3mw6m9kv
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6Academic Journal
المؤلفون: Parrish, Robert M, Burns, Lori A, Smith, Daniel GA, Simmonett, Andrew C, DePrince, A Eugene, Hohenstein, Edward G, Bozkaya, Uğur, Sokolov, Alexander Yu, Di Remigio, Roberto, Richard, Ryan M, Gonthier, Jérôme F, James, Andrew M, McAlexander, Harley R, Kumar, Ashutosh, Saitow, Masaaki, Wang, Xiao, Pritchard, Benjamin P, Verma, Prakash, Schaefer, Henry F, Patkowski, Konrad, King, Rollin A, Valeev, Edward F, Evangelista, Francesco A, Turney, Justin M, Crawford, T Daniel, Sherrill, C David
المصدر: Journal of Chemical Theory and Computation. 13(7)
مصطلحات موضوعية: Chemical Sciences, Physical Chemistry, Theoretical and Computational Chemistry, Biochemistry and Cell Biology, Computer Software, Chemical Physics, Physical chemistry, Theoretical and computational chemistry
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/00h3895r
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7Academic Journal
المؤلفون: Riera, Marc, Knight, Christopher, Bull-Vulpe, Ethan F., Zhu, Xuanyu, Agnew, Henry, Smith, Daniel G. A., Simmonett, Andrew C., Paesani, Francesco
المصدر: Journal of Chemical Physics; 8/7/2023, Vol. 159 Issue 5, p1-13, 13p
مصطلحات موضوعية: FORCE & energy, MONTE Carlo method, MESSAGE passing (Computer science), CONDENSED matter, METAL-organic frameworks
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8
المؤلفون: Simmonett, Andrew C.
الاتاحة: http://purl.galileo.usg.edu/uga%5Fetd/simmonett%5Fandrew%5Fc%5F200805%5Fphd
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9Academic Journal
المؤلفون: Huang, Jing, Mei, Ye, König, Gerhard, Simmonett, Andrew C, Pickard, Frank C, Wu, Qin, Wang, Lee-Ping, MacKerell, Alexander D, Brooks, Bernard R, Shao, Yihan
المصدر: Journal of Chemical Theory and Computation. 13(2)
مصطلحات موضوعية: Bioengineering, Theoretical and Computational Chemistry, Biochemistry and Cell Biology, Computer Software, Chemical Physics
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/4hq4h6vs
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10Academic Journal
المؤلفون: Gonzales, James E., Simmonett, Andrew C., Darden, Thomas A., Hwang, Wonmuk, Brooks, Bernard R.
المصدر: Biophysical Journal ; volume 123, issue 3, page 427a-428a ; ISSN 0006-3495
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11Academic Journal
المؤلفون: Yu, Yalun, Krämer, Andreas, Venable, Richard M, Simmonett, Andrew C, MacKerell, Alexander D, Klauda, Jeffery B, Pastor, Richard W, Brooks, Bernard R
المصدر: Journal of chemical theory and computation ; 17 ; 3 ; 1562 ; 1580 ; United States
Relation: Journal of Chemical Theory and Computation; http://hdl.handle.net/10713/15298
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12Academic Journal
المؤلفون: Smith, Daniel G. A., Burns, Lori A., Simmonett, Andrew C., Parrish, Robert M., Schieber, Matthew C., Galvelis, Raimondas, Kraus, Peter, Kruse, Holger, Di Remigio, Roberto, Alenaizan, Asem, James, Andrew M., Lehtola, Susi, Misiewicz, Jonathon P., Scheurer, Maximilian, Shaw, Robert A., Schriber, Jeffrey B., Xie, Yi, Glick, Zachary L., Sirianni, Dominic A., O'Brien, Joseph Senan, Waldrop, Jonathan M., Kumar, Ashutosh, Hohenstein, Edward G., Pritchard, Benjamin P., Brooks, Bernard R., Schaefer, Henry F., Sokolov, Alexander Yu., Patkowski, Konrad, DePrince, A. Eugene, Bozkaya, Ugur, King, Rollin A., Evangelista, Francesco A., Turney, Justin M., Crawford, T. Daniel, Sherrill, C. David
المساهمون: Department of Chemistry
مصطلحات موضوعية: ADAPTED PERTURBATION-THEORY, DENSITY-FUNCTIONAL THEORY, FRAGMENT POTENTIAL METHOD, COUPLED-CLUSTER METHODS, ANALYTIC ENERGY GRADIENTS, FROZEN NATURAL ORBITALS, SINGLE-REFERENCE, CONFIGURATION-INTERACTION, EXCITATION-ENERGIES, EXCITED-STATES, Chemical sciences
وصف الملف: application/pdf
Relation: The authors are grateful to the contributors of all earlier versions of the PSI program, as well as to all the developers of external libraries, plugins, and interfacing projects. The authors thank Professor Piotr Piecuch for providing the text describing the CCT3 plugin. Several of the co-authors were supported in their development of PSI4 and affiliated projects by the U.S. National Science Foundation through Grant Nos. CHE-1351978, ACI-1449723, CHE-1566192, ACI-1609842, CHE-1661604, CHE-1554354, CHE-1504217 ACI-1547580, and CHE-1900420; by the U.S. Department of Energy through Grant Nos. DE-SC0018412 and DE-SC0016004; by the Office of Basic Energy Sciences Computational Chemical Sciences (CCS) Research Program through Grant No. AL-18-380057; and by the Exascale Computing Project through Grant No. 17-SC-20-SC, a collaborative effort of the U.S. Department of Energy Office of Science and the National Nuclear Security Administration. U.B. acknowledges support from the Scientific and Technological Research Council of Turkey (Grant Nos. TUBITAK-114Z786, TUBITAK-116Z506, and TUBITAK-118Z916) and the European Cooperation in Science and Technology (Grant No. CM1405). The work at the National Institutes of Health was supported by the intramural research program of the National Heart, Lung, and Blood Institute. T.D.C. and The Molecular Sciences Software Institute acknowledge the Advanced Research Computing at Virginia Tech for providing computational resources and technical support. H.K. was supported by the SYMBIT project (Reg. No. CZ.02.1.01/0.0/0.0/15_003/0000477) financed by the ERDF. S.L. was supported by the Academy of Finland (Suomen Akatemia) through Project No. 311149. R.D.R. acknowledges partial support by the Research Council of Norway through its Centres of Excellence scheme, Project No. 262695, and through its Mobility Grant scheme, Project No. 261873. P.K. acknowledges support of the Forrest Research Foundation and the Pawsey Supercomputing Centre with funding from the Australian Government and the Government of Western Australia. D.G.A.S. also acknowledges the Open Force Field Consortium and Initiative for financial and scientific support.; Smith , D G A , Burns , L A , Simmonett , A C , Parrish , R M , Schieber , M C , Galvelis , R , Kraus , P , Kruse , H , Di Remigio , R , Alenaizan , A , James , A M , Lehtola , S , Misiewicz , J P , Scheurer , M , Shaw , R A , Schriber , J B , Xie , Y , Glick , Z L , Sirianni , D A , O'Brien , J S , Waldrop , J M , Kumar , A , Hohenstein , E G , Pritchard , B P , Brooks , B R , Schaefer , H F , Sokolov , A Y , Patkowski , K , DePrince , A E , Bozkaya , U , King , R A , Evangelista , F A , Turney , J M , Crawford , T D & Sherrill , C D 2020 , ' PSI4 1.4 : Open-source software for high-throughput quantum chemistry ' , Journal of Chemical Physics , vol. 152 , no. 18 , 184108 . https://doi.org/10.1063/5.0006002; ORCID: /0000-0001-6296-8103/work/75943948; http://hdl.handle.net/10138/321376; c8096d98-8d4f-4750-808d-858cc2f6492a; 000536238900004
الاتاحة: http://hdl.handle.net/10138/321376
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13Academic Journal
المؤلفون: BOZKAYA, UĞUR, Sherrill, C. David, Crawford, T. Daniel, Turney, Justin M., Evangelista, Francesco A., King, Rollin A., DePrince, A. Eugene, Patkowski, Konrad, Sokolov, Alexander Yu., Schaefer, Henry F., Brooks, Bernard R., Pritchard, Benjamin P., Hohenstein, Edward G., Kumar, Ashutosh, Waldrop, Jonathan M., O'Brien, Joseph Senan, Sirianni, Dominic A., Glick, Zachary L., Xie, Yi, Schriber, Jeffrey B., Shaw, Robert A., Scheurer, Maximilian, Misiewicz, Jonathon P., Lehtola, Susi, James, Andrew M., Alenaizan, Asem, Di Remigio, Roberto, Kruse, Holger, Kraus, Peter, Galvelis, Raimondas, Schieber, Matthew C., Parrish, Robert M., Simmonett, Andrew C., Burns, Lori A., Smith, Daniel G. A.
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14Academic Journal
المؤلفون: Eastman, Peter, Galvelis, Raimondas, Peláez, Raúl P., Abreu, Charlles R. A., Farr, Stephen E., Gallicchio, Emilio, Gorenko, Anton, Henry, Michael M., Hu, Frank, Huang, Jing, Krämer, Andreas, Michel, Julien, Mitchell, Joshua A., Pande, Vijay S., Rodrigues, João PGLM, Rodriguez-Guerra, Jaime, Simmonett, Andrew C., Singh, Sukrit, Swails, Jason, Turner, Philip
المصدر: Journal of Physical Chemistry B; 1/11/2024, Vol. 128 Issue 1, p109-116, 8p
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15Academic Journal
المؤلفون: Simmonett, Andrew C.1 (AUTHOR) andrew.simmonett@nih.gov, Brooks, Bernard R.1 (AUTHOR)
المصدر: Journal of Chemical Physics. 3/14/2021, Vol. 154 Issue 10, p1-9. 9p.
مصطلحات موضوعية: *ELECTROSTATICS, *CRYSTAL structure, *PHONONS, *ELECTROSTATIC interaction
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16Academic Journal
المؤلفون: Simmonett, Andrew C.1 (AUTHOR) andrew.simmonett@nih.gov, Brooks, Bernard R.1 (AUTHOR)
المصدر: Journal of Chemical Physics. 2/7/2021, Vol. 154 Issue 5, p1-8. 8p.
مصطلحات موضوعية: *FAST Fourier transforms, *LINEAR algebra, *COMPUTATIONAL complexity, *PARTICLES, *ELECTROSTATICS
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17Academic JournalA simplified charge projection scheme for long-range electrostatics in ab initio QM/MM calculations.
المؤلفون: Pan, Xiaoliang, Nam, Kwangho, Epifanovsky, Evgeny, Simmonett, Andrew C., Rosta, Edina, Shao, Yihan
المصدر: Journal of Chemical Physics; 1/14/2021, Vol. 154 Issue 2, p1-15, 15p
مصطلحات موضوعية: ELECTRIC potential, ATOMS, ELECTROSTATICS
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18Academic Journal
المؤلفون: BOZKAYA, UĞUR, Sherrill, C. David, Crawford, T. Daniel, Turney, Justin M., Evangelista, Francesco A., Valeev, Edward F., King, Rollin A., Patkowski, Konrad, Schaefer, Henry F., Prakash, Verma, Pritchard, Benjamin P., Wang, Xiao, Saitow, Masaaki, Kumar, Ashutosh, McAlexander, Harley R., James, Andrew M., Gonthier, Jerome F., Richard, Ryan M., Di Remigio, Roberto, Sokolov, Alexander Yu., Hohenstein, Edward G., DePrince, A. Eugene, Simmonett, Andrew C., Smith, Daniel G. A., Burns, Lori A., Parrish, Robert M.
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19Academic Journal
المساهمون: National Institutes of Health
المصدر: Journal of Computational Chemistry ; volume 42, issue 19, page 1373-1383 ; ISSN 0192-8651 1096-987X
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20Academic Journal
المؤلفون: Chen, Lieyang, Cruz, Anthony, Roe, Daniel R., Simmonett, Andrew C., Wickstrom, Lauren, Deng, Nanjie, Kurtzman, Tom
المساهمون: National Institutes of Health
المصدر: Journal of Chemical Theory and Computation ; volume 17, issue 5, page 2714-2724 ; ISSN 1549-9618 1549-9626