-
1Academic Journal
المؤلفون: Yuan, Yuan, Seif, Yara, Rychel, Kevin, Yoo, Reo, Chauhan, Siddharth, Poudel, Saugat, Al-bulushi, Tahani, Palsson, Bernhard O, Sastry, Anand V
المصدر: mSystems. 7(6)
مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Biomedical and Clinical Sciences, Genetics, Microbiology, Clinical Sciences, Vaccine Related, Infectious Diseases, Digestive Diseases, Emerging Infectious Diseases, Human Genome, Prevention, Biotechnology, Biodefense, Foodborne Illness, 2.2 Factors relating to the physical environment, Aetiology, Infection, Humans, Salmonella enterica, Serogroup, Salmonella typhimurium, Gene Expression Regulation, Gene Expression Profiling, Salmonella, ICA, pan-genomics, pan-genome, Salmonella Typhimurium, systems biology, transcriptomics, gene regulation
وصف الملف: application/pdf
-
2Academic Journal
المؤلفون: Rajput, Akanksha, Tsunemoto, Hannah, Sastry, Anand V, Szubin, Richard, Rychel, Kevin, Chauhan, Siddharth M, Pogliano, Joe, Palsson, Bernhard O
المصدر: Nucleic Acids Research. 50(17)
مصطلحات موضوعية: Lung, Antimicrobial Resistance, Rare Diseases, Infectious Diseases, Cystic Fibrosis, Genetics, 2.2 Factors relating to the physical environment, Development of treatments and therapeutic interventions, 5.1 Pharmaceuticals, Aetiology, 2.1 Biological and endogenous factors, Infection, Anti-Bacterial Agents, Bacterial Proteins, Biofilms, Gene Expression Profiling, Humans, Pseudomonas Infections, Pseudomonas aeruginosa, beta-Lactams, Environmental Sciences, Biological Sciences, Information and Computing Sciences, Developmental Biology
وصف الملف: application/pdf
-
3Academic Journal
المؤلفون: Rajput, Akanksha, Tsunemoto, Hannah, Sastry, Anand V, Szubin, Richard, Rychel, Kevin, Sugie, Joseph, Pogliano, Joe, Palsson, Bernhard O
المصدر: Nucleic Acids Research. 50(7)
مصطلحات موضوعية: Genetics, Rare Diseases, Lung, Biotechnology, Cystic Fibrosis, Aetiology, 2.2 Factors relating to the physical environment, Bacterial Proteins, Escherichia coli, Gene Expression Regulation, Bacterial, Machine Learning, Pseudomonas aeruginosa, Transcription Factors, Transcriptome, Environmental Sciences, Biological Sciences, Information and Computing Sciences, Developmental Biology
وصف الملف: application/pdf
-
4Academic Journal
المؤلفون: Xavier, Joao B, Monk, Jonathan M, Poudel, Saugat, Norsigian, Charles J, Sastry, Anand V, Liao, Chen, Bento, Jose, Suchard, Marc A, Arrieta-Ortiz, Mario L, Peterson, Eliza JR, Baliga, Nitin S, Stoeger, Thomas, Ruffin, Felicia, Richardson, Reese AK, Gao, Catherine A, Horvath, Thomas D, Haag, Anthony M, Wu, Qinglong, Savidge, Tor, Yeaman, Michael R
المصدر: iScience. 25(4)
مصطلحات موضوعية: Biochemistry and Cell Biology, Biological Sciences, Vaccine Related, Emerging Infectious Diseases, Prevention, Bioengineering, Infectious Diseases, Biodefense, 2.1 Biological and endogenous factors, Aetiology, Infection, Good Health and Well Being, Computer modeling, Infection control in health technology, Microbiology
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/8vm6k55d
-
5Academic Journal
المؤلفون: Sastry, Anand V, Dillon, Nicholas, Anand, Amitesh, Poudel, Saugat, Hefner, Ying, Xu, Sibei, Szubin, Richard, Feist, Adam M, Nizet, Victor, Palsson, Bernhard
المصدر: mSphere. 6(4)
مصطلحات موضوعية: Antimicrobial Resistance, Biodefense, Infectious Diseases, Vaccine Related, Prevention, Emerging Infectious Diseases, Aetiology, Development of treatments and therapeutic interventions, 5.1 Pharmaceuticals, 2.1 Biological and endogenous factors, Infection, Anti-Bacterial Agents, Culture Media, Drug Resistance, Bacterial, Escherichia coli K12, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Humans, Iron, Machine Learning, Microbial Sensitivity Tests, Transcriptome, RNA-seq, antibiotics, independent component analysis, iron regulation, machine learning, transcriptional regulation, Immunology, Microbiology
وصف الملف: application/pdf
-
6Academic Journal
المؤلفون: Anand, Amitesh, Olson, Connor A, Sastry, Anand V, Patel, Arjun, Szubin, Richard, Yang, Laurence, Feist, Adam M, Palsson, Bernhard O
المصدر: Cell Reports. 35(1)
مصطلحات موضوعية: Genetics, Emerging Infectious Diseases, Binding Sites, Citric Acid Cycle, Electrons, Escherichia coli, Escherichia coli Proteins, Glycolysis, Homeostasis, Oxidation-Reduction, Pyruvate Dehydrogenase Complex, Pyruvic Acid, Ribosomes, Transcription, Genetic, adaptive laboratory evolution, bioenergetics, proteome allocation, system biology, transcriptional regulatory network, Biochemistry and Cell Biology, Medical Physiology
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/11z037js
-
7Academic Journal
المؤلفون: Menon, Nitasha D., Poudel, Saugat, Sastry, Anand V., Rychel, Kevin, Szubin, Richard, Dillon, Nicholas, Tsunemoto, Hannah, Hirose, Yujiro, Nair, Bipin G., Kumar, Geetha B., Palsson, Bernhard O., Nizet, Victor
المساهمون: Igoshin, Oleg A., HHS | National Institutes of Health, Novo Nordisk Fonden, MEXT | Japan Society for the Promotion of Science, University Grants Commission
المصدر: mSystems ; volume 9, issue 2 ; ISSN 2379-5077
-
8Academic Journal
المؤلفون: Rychel, Kevin, Decker, Katherine, Sastry, Anand V, Phaneuf, Patrick V, Poudel, Saugat, Palsson, Bernhard O
المصدر: Nucleic Acids Research. 49(D1)
مصطلحات موضوعية: Biotechnology, Genetics, Infection, Bacillus subtilis, Bacterial Proteins, Databases, Genetic, Escherichia coli, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Gene Regulatory Networks, Internet, Knowledge Bases, Machine Learning, Software, Staphylococcus aureus, Transcription Factors, Transcription, Genetic, Transcriptome, Environmental Sciences, Biological Sciences, Information and Computing Sciences, Developmental Biology
وصف الملف: application/pdf
-
9Academic Journal
المؤلفون: Choudhary, Kumari Sonal, Kleinmanns, Julia A, Decker, Katherine, Sastry, Anand V, Gao, Ye, Szubin, Richard, Seif, Yara, Palsson, Bernhard O
المصدر: mSystems. 5(6)
مصطلحات موضوعية: Human Genome, Prevention, Vaccine Related, Urologic Diseases, Infectious Diseases, Biotechnology, Genetics, Biodefense, Emerging Infectious Diseases, 2.1 Biological and endogenous factors, Aetiology, 2.2 Factors relating to the physical environment, Infection, two-component systems, E. coli, independent component analysis, transcriptomics, ChIP-exo, transcriptional regulatory network, gene targets, E. coli
وصف الملف: application/pdf
-
10Academic Journal
المؤلفون: Rychel, Kevin, Sastry, Anand V, Palsson, Bernhard O
المصدر: Nature communications. 11(1)
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/60c772h6
-
11Academic Journal
المؤلفون: Poudel, Saugat, Tsunemoto, Hannah, Seif, Yara, Sastry, Anand V, Szubin, Richard, Xu, Sibei, Machado, Henrique, Olson, Connor A, Anand, Amitesh, Pogliano, Joe, Nizet, Victor, Palsson, Bernhard O
المصدر: Proceedings of the National Academy of Sciences of the United States of America. 117(29)
مصطلحات موضوعية: Emerging Infectious Diseases, Biotechnology, Infectious Diseases, Human Genome, Genetics, Bacterial Proteins, DNA-Binding Proteins, Gene Expression Regulation, Bacterial, Gene Regulatory Networks, Metabolic Networks and Pathways, Repressor Proteins, Sequence Analysis, RNA, Sigma Factor, Staphylococcal Infections, Staphylococcus aureus, Transcriptome, Virulence, Virulence Factors, transcriptional regulatory network, virulence, metabolism
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/34k9h8hd
-
12Academic Journal
المؤلفون: Anand, Amitesh, Chen, Ke, Yang, Laurence, Sastry, Anand V, Olson, Connor A, Poudel, Saugat, Seif, Yara, Hefner, Ying, Phaneuf, Patrick V, Xu, Sibei, Szubin, Richard, Feist, Adam M, Palsson, Bernhard O
المصدر: Proceedings of the National Academy of Sciences of the United States of America. 116(50)
مصطلحات موضوعية: Genetics, Aerobiosis, Biological Evolution, Electron Transport, Escherichia coli, Naphthoquinones, Oxidative Stress, Oxo-Acid-Lyases, Oxygen, Reactive Oxygen Species, respiration, naphthoquinone, oxidative stress, genome-scale model
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/7m9489cz
-
13Academic Journal
المؤلفون: Sastry, Anand V, Gao, Ye, Szubin, Richard, Hefner, Ying, Xu, Sibei, Kim, Donghyuk, Choudhary, Kumari Sonal, Yang, Laurence, King, Zachary A, Palsson, Bernhard O
المصدر: Nature communications. 10(1)
مصطلحات موضوعية: Escherichia coli, Escherichia coli Proteins, Transcription Factors, Gene Expression Profiling, Signal Transduction, Gene Expression Regulation, Bacterial, Algorithms, Models, Genetic, Gene Regulatory Networks, Transcriptome, Gene Expression Regulation, Bacterial, Models, Genetic
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/3675h5vp
-
14Academic Journal
المؤلفون: Yang, Laurence, Mih, Nathan, Anand, Amitesh, Park, Joon Ho, Tan, Justin, Yurkovich, James T, Monk, Jonathan M, Lloyd, Colton J, Sandberg, Troy E, Seo, Sang Woo, Kim, Donghyuk, Sastry, Anand V, Phaneuf, Patrick, Gao, Ye, Broddrick, Jared T, Chen, Ke, Heckmann, David, Szubin, Richard, Hefner, Ying, Feist, Adam M, Palsson, Bernhard O
المصدر: Proceedings of the National Academy of Sciences of the United States of America. 116(28)
مصطلحات موضوعية: Genetics, Catalysis, Cell Proliferation, Escherichia coli, Gene Expression Regulation, Hydrogen Peroxide, Iron, Iron-Sulfur Proteins, Metalloproteins, Operon, Oxidative Stress, Reactive Oxygen Species, Sulfur, reactive oxygen species, oxidative stress, metabolism, protein expression, genome-scale model
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/9f32846v
-
15Academic Journal
المؤلفون: Lachance, Jean-Christophe, Lloyd, Colton J, Monk, Jonathan M, Yang, Laurence, Sastry, Anand V, Seif, Yara, Palsson, Bernhard O, Rodrigue, Sébastien, Feist, Adam M, King, Zachary A, Jacques, Pierre-Étienne
المصدر: PLoS computational biology. 15(4)
مصطلحات موضوعية: Escherichia coli, Genomics, Biomass, Genome, Bacterial, Models, Biological, Software, Metabolic Networks and Pathways, Genome, Bacterial, Models, Biological, Mathematical Sciences, Biological Sciences, Information and Computing Sciences, Bioinformatics
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/8px4x4j0
-
16Academic Journal
المؤلفون: Fang, Xin, Monk, Jonathan M, Mih, Nathan, Du, Bin, Sastry, Anand V, Kavvas, Erol, Seif, Yara, Smarr, Larry, Palsson, Bernhard O
المصدر: BMC Systems Biology. 12(1)
مصطلحات موضوعية: Microbiology, Medical Microbiology, Biomedical and Clinical Sciences, Biological Sciences, Human Genome, Genetics, Crohn's Disease, Digestive Diseases, Infectious Diseases, Inflammatory Bowel Disease, Autoimmune Disease, Aetiology, 2.1 Biological and endogenous factors, 2.2 Factors relating to the physical environment, Oral and gastrointestinal, Escherichia coli, Genomics, Humans, Inflammatory Bowel Diseases, Intestinal Mucosa, Metabolic modeling, Pan-genome analysis, Inflammatory bowel disease, Biochemistry and Cell Biology, Computer Software, Other Medical and Health Sciences, Bioinformatics, Bioinformatics and computational biology, Medical biochemistry and metabolomics
وصف الملف: application/pdf
-
17Academic Journal
المؤلفون: Gao, Ye, Yurkovich, James T, Seo, Sang Woo, Kabimoldayev, Ilyas, Dräger, Andreas, Chen, Ke, Sastry, Anand V, Fang, Xin, Mih, Nathan, Yang, Laurence, Eichner, Johannes, Cho, Byung-Kwan, Kim, Donghyuk, Palsson, Bernhard O
المصدر: Nucleic Acids Research. 46(20)
مصطلحات موضوعية: Biodefense, Vaccine Related, Biotechnology, Genetics, Human Genome, Prevention, Escherichia coli K12, Escherichia coli Proteins, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Gene Regulatory Networks, Oligonucleotide Array Sequence Analysis, Transcription Factors, Environmental Sciences, Biological Sciences, Information and Computing Sciences, Developmental Biology
وصف الملف: application/pdf
-
18Academic Journal
المؤلفون: Lamoureux, Cameron R., Decker, Katherine T., Sastry, Anand V., Rychel, Kevin, Gao, Ye, McConn, John Luke, Zielinski, Daniel C., Palsson, Bernhard O.
المصدر: Lamoureux , C R , Decker , K T , Sastry , A V , Rychel , K , Gao , Y , McConn , J L , Zielinski , D C & Palsson , B O 2023 , ' A multi-scale expression and regulation knowledge base for Escherichia coli ' , Nucleic Acids Research , vol. 51 , no. 19 , gkad750 , pp. 10176-10193 . https://doi.org/10.1093/nar/gkad750
وصف الملف: application/pdf
-
19Academic Journal
المؤلفون: Bajpe, Heera, Rychel, Kevin, Lamoureux, Cameron R., Sastry, Anand V., Palsson, Bernhard O.
المصدر: Bajpe , H , Rychel , K , Lamoureux , C R , Sastry , A V & Palsson , B O 2023 , ' Machine learning uncovers the Pseudomonas syringae transcriptome in microbial communities and during infection ' , mSystems , vol. 8 , no. 5 , e00437-23 . https://doi.org/10.1128/msystems.00437-23
مصطلحات موضوعية: Pseudomonas syringae, Independent component analysis, Transcriptomics, Gene regulation, Data mining, Microbial interactions
وصف الملف: application/pdf
-
20Academic Journal
المؤلفون: Rychel, Kevin, Tan, Justin, Patel, Arjun, Lamoureux, Cameron, Hefner, Ying, Szubin, Richard, Johnsen, Josefin, Mohamed, Elsayed Tharwat Tolba, Phaneuf, Patrick V., Anand, Amitesh, Olson, Connor A., Park, Joon Ho, Sastry, Anand V., Yang, Laurence, Feist, Adam M., Palsson, Bernhard O.
المصدر: Rychel , K , Tan , J , Patel , A , Lamoureux , C , Hefner , Y , Szubin , R , Johnsen , J , Mohamed , E T T , Phaneuf , P V , Anand , A , Olson , C A , Park , J H , Sastry , A V , Yang , L , Feist , A M & Palsson , B O 2023 , ' Laboratory evolution, transcriptomics, and modeling reveal mechanisms of paraquat tolerance ' , Cell Reports , vol. 42 , no. 9 , 113105 . https://doi.org/10.1016/j.celrep.2023.113105
وصف الملف: application/pdf