نتائج البحث - "Samir Fakhour (11261482)"

1

Academic Journal

Summary of collection details and 16S rRNA gene sequencing results for aphid samples.

المؤلفون: Samir Fakhour (11261482), François Renoz (713247), Jérôme Ambroise (3498626), Inès Pons (2553019), Christine Noël (713248), Jean-Luc Gala (396991), Thierry Hance (353103)

مصطلحات موضوعية: Microbiology, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, aphid Anoecia corni, obligate symbiont Buchnera, symbiont Buchnera aphidicola, facultative symbionts Serratia symb., diversity, 16 S rRNA amplicon Illumina sequencing, dogwood-grass aphid Anoecia corni, aphid species, OTU

Relation: https://figshare.com/articles/journal_contribution/Summary_of_collection_details_and_16S_rRNA_gene_sequencing_results_for_aphid_samples_/15150220

الاتاحة: https://doi.org/10.1371/journal.pone.0256019.s005

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2

Academic Journal

Data analysis: Commands and options used to build the OUT table.

المؤلفون: Samir Fakhour (11261482), François Renoz (713247), Jérôme Ambroise (3498626), Inès Pons (2553019), Christine Noël (713248), Jean-Luc Gala (396991), Thierry Hance (353103)

مصطلحات موضوعية: Microbiology, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, aphid Anoecia corni, obligate symbiont Buchnera, symbiont Buchnera aphidicola, facultative symbionts Serratia symb., diversity, 16 S rRNA amplicon Illumina sequencing, dogwood-grass aphid Anoecia corni, aphid species, OTU

Relation: https://figshare.com/articles/journal_contribution/Data_analysis_Commands_and_options_used_to_build_the_OUT_table_/15150223

الاتاحة: https://doi.org/10.1371/journal.pone.0256019.s006

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3

Academic Journal

Contaminant OTUs identified in this study.

المؤلفون: Samir Fakhour (11261482), François Renoz (713247), Jérôme Ambroise (3498626), Inès Pons (2553019), Christine Noël (713248), Jean-Luc Gala (396991), Thierry Hance (353103)

مصطلحات موضوعية: Microbiology, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, aphid Anoecia corni, obligate symbiont Buchnera, symbiont Buchnera aphidicola, facultative symbionts Serratia symb., diversity, 16 S rRNA amplicon Illumina sequencing, dogwood-grass aphid Anoecia corni, aphid species, OTU

Relation: https://figshare.com/articles/journal_contribution/Contaminant_OTUs_identified_in_this_study_/15150229

الاتاحة: https://doi.org/10.1371/journal.pone.0256019.s008

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4

Academic Journal

Bacterial representative sequences (operational taxonomic units) found in A . corni .

المؤلفون: Samir Fakhour (11261482), François Renoz (713247), Jérôme Ambroise (3498626), Inès Pons (2553019), Christine Noël (713248), Jean-Luc Gala (396991), Thierry Hance (353103)

مصطلحات موضوعية: Microbiology, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, aphid Anoecia corni, obligate symbiont Buchnera, symbiont Buchnera aphidicola, facultative symbionts Serratia symb., diversity, 16 S rRNA amplicon Illumina sequencing, dogwood-grass aphid Anoecia corni, aphid species, OTU

Relation: https://figshare.com/articles/journal_contribution/Bacterial_representative_sequences_operational_taxonomic_units_found_in_i_A_i_i_corni_i_/15150226

الاتاحة: https://doi.org/10.1371/journal.pone.0256019.s007

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5

Image

Phylogenetic analysis of Buchnera associated with A . corni and its placement compared to strains associated with other aphid species, based on a sequence from the V3-V4 region of bacterial 16S rRNA.

المؤلفون: Samir Fakhour (11261482), François Renoz (713247), Jérôme Ambroise (3498626), Inès Pons (2553019), Christine Noël (713248), Jean-Luc Gala (396991), Thierry Hance (353103)

مصطلحات موضوعية: Microbiology, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, aphid Anoecia corni, obligate symbiont Buchnera, symbiont Buchnera aphidicola, facultative symbionts Serratia symb., diversity, 16 S rRNA amplicon Illumina sequencing, dogwood-grass aphid Anoecia corni, aphid species, OTU

Relation: https://figshare.com/articles/figure/Phylogenetic_analysis_of_i_Buchnera_i_associated_with_i_A_i_i_corni_i_and_its_placement_compared_to_strains_associated_with_other_aphid_species_based_on_a_sequence_from_the_V3-V4_region_of_bacterial_16S_rRNA_/15150208

الاتاحة: https://doi.org/10.1371/journal.pone.0256019.s001

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6

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Phylogenetic analysis of Wolbachia associated with Anoecia corni and its placement compared to strains associated with other insect species, based on a sequence from the V3-V4 region of bacterial 16S rRNA.

المؤلفون: Samir Fakhour (11261482), François Renoz (713247), Jérôme Ambroise (3498626), Inès Pons (2553019), Christine Noël (713248), Jean-Luc Gala (396991), Thierry Hance (353103)

مصطلحات موضوعية: Microbiology, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, aphid Anoecia corni, obligate symbiont Buchnera, symbiont Buchnera aphidicola, facultative symbionts Serratia symb., diversity, 16 S rRNA amplicon Illumina sequencing, dogwood-grass aphid Anoecia corni, aphid species, OTU

Relation: https://figshare.com/articles/figure/Phylogenetic_analysis_of_i_Wolbachia_i_associated_with_i_Anoecia_corni_i_and_its_placement_compared_to_strains_associated_with_other_insect_species_based_on_a_sequence_from_the_V3-V4_region_of_bacterial_16S_rRNA_/15150214

الاتاحة: https://doi.org/10.1371/journal.pone.0256019.s003

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7

Image

Phylogenetic analysis of Serratia symbiotica associated with Anoecia corni and their placement compared to strains associated with other aphid species, based on a sequence from the V3-V4 region of bacterial 16S rRNA.

المؤلفون: Samir Fakhour (11261482), François Renoz (713247), Jérôme Ambroise (3498626), Inès Pons (2553019), Christine Noël (713248), Jean-Luc Gala (396991), Thierry Hance (353103)

مصطلحات موضوعية: Microbiology, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, aphid Anoecia corni, obligate symbiont Buchnera, symbiont Buchnera aphidicola, facultative symbionts Serratia symb., diversity, 16 S rRNA amplicon Illumina sequencing, dogwood-grass aphid Anoecia corni, aphid species, OTU

Relation: https://figshare.com/articles/figure/Phylogenetic_analysis_of_i_Serratia_symbiotica_i_associated_with_i_Anoecia_corni_i_and_their_placement_compared_to_strains_associated_with_other_aphid_species_based_on_a_sequence_from_the_V3-V4_region_of_bacterial_16S_rRNA_/15150211

الاتاحة: https://doi.org/10.1371/journal.pone.0256019.s002

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8

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Phylogenetic analysis of Arsenophonus associated with Anoecia corni and its placement compared to strains associated with other insect species, based on a sequence from the V3-V4 region of bacterial 16S rRNA.

المؤلفون: Samir Fakhour (11261482), François Renoz (713247), Jérôme Ambroise (3498626), Inès Pons (2553019), Christine Noël (713248), Jean-Luc Gala (396991), Thierry Hance (353103)

مصطلحات موضوعية: Microbiology, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, aphid Anoecia corni, obligate symbiont Buchnera, symbiont Buchnera aphidicola, facultative symbionts Serratia symb., diversity, 16 S rRNA amplicon Illumina sequencing, dogwood-grass aphid Anoecia corni, aphid species, OTU

Relation: https://figshare.com/articles/figure/Phylogenetic_analysis_of_i_Arsenophonus_i_associated_with_i_Anoecia_corni_i_and_its_placement_compared_to_strains_associated_with_other_insect_species_based_on_a_sequence_from_the_V3-V4_region_of_bacterial_16S_rRNA_/15150217

الاتاحة: https://doi.org/10.1371/journal.pone.0256019.s004

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9

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Geographical location of collection sites of A . corni colonies analyzed in this study (for details, see S1 Table in the supporting information).

المؤلفون: Samir Fakhour (11261482), François Renoz (713247), Jérôme Ambroise (3498626), Inès Pons (2553019), Christine Noël (713248), Jean-Luc Gala (396991), Thierry Hance (353103)

مصطلحات موضوعية: Microbiology, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, aphid Anoecia corni, obligate symbiont Buchnera, symbiont Buchnera aphidicola, facultative symbionts Serratia symb., diversity, 16 S rRNA amplicon Illumina sequencing, dogwood-grass aphid Anoecia corni, aphid species, OTU

Relation: https://figshare.com/articles/figure/Geographical_location_of_collection_sites_of_i_A_i_i_corni_i_colonies_analyzed_in_this_study_for_details_see_S1_Table_in_the_supporting_information_/15150232

الاتاحة: https://doi.org/10.1371/journal.pone.0256019.g001

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10

Image

Relative abundance of bacterial taxa from Illumina sequencing of 16S rRNA amplicons, represented as a heat map based on the log-transformed values.

المؤلفون: Samir Fakhour (11261482), François Renoz (713247), Jérôme Ambroise (3498626), Inès Pons (2553019), Christine Noël (713248), Jean-Luc Gala (396991), Thierry Hance (353103)

مصطلحات موضوعية: Microbiology, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, aphid Anoecia corni, obligate symbiont Buchnera, symbiont Buchnera aphidicola, facultative symbionts Serratia symb., diversity, 16 S rRNA amplicon Illumina sequencing, dogwood-grass aphid Anoecia corni, aphid species, OTU

Relation: https://figshare.com/articles/figure/Relative_abundance_of_bacterial_taxa_from_Illumina_sequencing_of_16S_rRNA_amplicons_represented_as_a_heat_map_based_on_the_log-transformed_values_/15150235

الاتاحة: https://doi.org/10.1371/journal.pone.0256019.g002

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11

Summary of sequencing data.

المؤلفون: Samir Fakhour (11261482), François Renoz (713247), Jérôme Ambroise (3498626), Inès Pons (2553019), Christine Noël (713248), Jean-Luc Gala (396991), Thierry Hance (353103)

مصطلحات موضوعية: Microbiology, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, aphid Anoecia corni, obligate symbiont Buchnera, symbiont Buchnera aphidicola, facultative symbionts Serratia symb., diversity, 16 S rRNA amplicon Illumina sequencing, dogwood-grass aphid Anoecia corni, aphid species, OTU

Relation: https://figshare.com/articles/dataset/Summary_of_sequencing_data_/15150238

الاتاحة: https://doi.org/10.1371/journal.pone.0256019.t001

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12

Taxonomic assignment of OTUs by Greengenes and GenBank, including the three top BLAST hits, GenBank accession numbers and % identity.

المؤلفون: Samir Fakhour (11261482), François Renoz (713247), Jérôme Ambroise (3498626), Inès Pons (2553019), Christine Noël (713248), Jean-Luc Gala (396991), Thierry Hance (353103)

مصطلحات موضوعية: Microbiology, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, aphid Anoecia corni, obligate symbiont Buchnera, symbiont Buchnera aphidicola, facultative symbionts Serratia symb., diversity, 16 S rRNA amplicon Illumina sequencing, dogwood-grass aphid Anoecia corni, aphid species, OTU

Relation: https://figshare.com/articles/dataset/Taxonomic_assignment_of_OTUs_by_Greengenes_and_GenBank_including_the_three_top_BLAST_hits_GenBank_accession_numbers_and_identity_/15150241

الاتاحة: https://doi.org/10.1371/journal.pone.0256019.t002

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