المؤلفون: Rachel R. Cueny, Sameer Varma, Kristina H. Schmidt, James L. Keck

المصدر: PLoS ONE, Vol 18, Iss 6 (2023)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10237670/?tool=EBI; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/d66d3cbace63455e97db73d49ed2dff6

المؤلفون: Nikola Rogic, Sylvain J. Charbonnier, Franco Garin, Guy W. Dayhoff II, Eric Gagliano, Mel Rodgers, Charles B. Connor, Sameer Varma, David Shean

المصدر: Remote Sensing, Vol 15, Iss 11, p 2791 (2023)

مصطلحات موضوعية: remote sensing, dual band, radar backscatter, surface roughness, volcanic deposits mapping, UAS, Science

وصف الملف: electronic resource

Relation: https://www.mdpi.com/2072-4292/15/11/2791; https://doaj.org/toc/2072-4292

URL الوصول: https://doaj.org/article/16540a750d3146eeb2ff75cea9347e84

المؤلفون: Pavel Dutov, Olga Antipova, Sameer Varma, Joseph P R O Orgel, Jay D Schieber

المصدر: PLoS ONE, Vol 11, Iss 1, p e0145711 (2016)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC4723153?pdf=render; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/83e377b0b9394534b0a4fc21f20c53e7

المؤلفون: Julian M. Delgado, Péter R. Nagy, Sameer Varma

مصطلحات موضوعية: Biophysics, Biochemistry, Ecology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, recommend critical changes, proteins remain large, nonpolarizable force fields, high field response, experimental structural data, polarizable amoeba model, amoeba protein model, provides new insights, revised polarization parameters, provide detailed insights, modeling divalent cations, mean absolute error, dramatically improves mg, fix )” corrections, enzymes also require, 2 +, new model, divalent cations, fix corrections, explicit polarization, dihedral parameters, also present, “ nonbonded, utilize nucleotides, systematic assessment

Relation: https://figshare.com/articles/journal_contribution/Polarizable_AMOEBA_Model_for_Simulating_Mg_sup_2_sup_Protein_Nucleotide_Complexes/24747592

الاتاحة: https://doi.org/10.1021/acs.jcim.3c01513.s001
https://figshare.com/articles/journal_contribution/Polarizable_AMOEBA_Model_for_Simulating_Mg_sup_2_sup_Protein_Nucleotide_Complexes/24747592

المؤلفون: Sanim Rahman, Vered Wineman-Fisher, Peter Nagy, Yasmine Al-Hamdani, TKATCHENKO, Alexandre, Sameer Varma

المصدر: Chemistry (2021-05-17)

مصطلحات موضوعية: Physical, chemical, mathematical & earth Sciences, Physics, Physique, chimie, mathématiques & sciences de la terre

Relation: urn:issn:0947-6539; urn:issn:1521-3765; https://orbilu.uni.lu/handle/10993/50208; info:hdl:10993/50208; https://orbilu.uni.lu/bitstream/10993/50208/1/rahman2021.pdf; info:pmid:33999467; wos:000662787300001

الاتاحة: https://orbilu.uni.lu/handle/10993/50208
https://orbilu.uni.lu/bitstream/10993/50208/1/rahman2021.pdf
https://doi.org/10.1002/chem.202100644

المؤلفون: Julián M. Delgado, Nalvi Duro, David M. Rogers, Tkatchenko, Alexandre, Sagar A. Pandi, Sameer Varma

المصدر: Wiley (2021-04-17)

مصطلحات موضوعية: Physical, chemical, mathematical & earth Sciences, Physics, Physique, chimie, mathématiques & sciences de la terre

Relation: urn:issn:1939-5094; urn:issn:1939-005X; https://orbilu.uni.lu/handle/10993/49354; info:hdl:10993/49354; info:pmid:33864655; wos:000644202500001

الاتاحة: https://orbilu.uni.lu/handle/10993/49354
https://orbilu.uni.lu/bitstream/10993/49354/1/Proteins%20-%202021%20-%20Delgado%20-%20Molecular%20basis%20for%20higher%20affinity%20of%20SARS%25u2010CoV%25u20102%20spike%20RBD%20for%20human%20ACE2%20receptor.pdf
https://doi.org/10.1002/prot.26086

المؤلفون: Sanim Rahman, Vered Wineman-Fisher, Yasmine Al-Hamdani, TKATCHENKO, Alexandre, Sameer Varma

المصدر: Journal of Molecular Biology (2021-02-05)

مصطلحات موضوعية: Physical, chemical, mathematical & earth Sciences, Physics, Physique, chimie, mathématiques & sciences de la terre

Relation: urn:issn:0022-2836; urn:issn:1089-8638; https://orbilu.uni.lu/handle/10993/49356; info:hdl:10993/49356; info:pmid:33307090; wos:000609587000002

الاتاحة: https://orbilu.uni.lu/handle/10993/49356
https://orbilu.uni.lu/bitstream/10993/49356/1/1-s2.0-S0022283620306707-main.pdf
https://doi.org/10.1016/j.jmb.2020.166745

المؤلفون: Sameer Varma, Joseph P. R. O. Orgel, Jay D. Schieber

المصدر: International Journal of Molecular Sciences; Volume 22; Issue 16; Pages: 9068

مصطلحات موضوعية: molecular dynamics, polymers, fibril assembly, collagen, hydroxylation

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Molecular Biophysics; https://dx.doi.org/10.3390/ijms22169068

الاتاحة: https://doi.org/10.3390/ijms22169068

المؤلفون: Julián A. Delgado, Vered Wineman-Fisher, Sagar Pandit, Sameer Varma

المصدر: Journal of Chemical Information and Modeling. 62:4713-4726

مصطلحات موضوعية: Ions, General Chemical Engineering, Calibration, Proteins, Reproducibility of Results, Thermodynamics, Water, General Chemistry, Library and Information Sciences, Amoeba, Computer Science Applications

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4be92f8bbcaf3739b2480e7cec94cbd8
https://doi.org/10.1021/acs.jcim.2c00758

المؤلفون: Smita Dey, Dhanabal S P, Sameer Varma

المصدر: Current Pharmaceutical Biotechnology. 23:679-706

مصطلحات موضوعية: biology, Chemistry, Pinocytosis, media_common.quotation_subject, Cell Membrane, education, Pharmaceutical Science, Biological Transport, Endocytosis, Clathrin, Membrane bending, Caveolae, Caveolin, biology.protein, Biophysics, Nanoparticles, Internalization, Biotechnology, media_common, Dynamin

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::eee459690d309e902f8aa3a1f3c37b29
https://doi.org/10.2174/1389201022666210714145356

المؤلفون: Matthew Saunders, Vered Wineman-Fisher, Eric Jakobsson, Sameer Varma, Sagar A. Pandit

المصدر: Langmuir

مصطلحات موضوعية: Ions, Lipid Bilayers, Electrochemistry, Reproducibility of Results, Thermodynamics, General Materials Science, Surfaces and Interfaces, Molecular Dynamics Simulation, Condensed Matter Physics, Spectroscopy, Article

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8bd4d99faae2f200ca85612901d3150f
https://pubmed.ncbi.nlm.nih.gov/35192365

المؤلفون: Julian A. Melendez, Peter R. Nagy, Sameer Varma

المصدر: Biophysical Journal. 122:37a

مصطلحات موضوعية: Biophysics

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::0876bf1c010596362f42215855128d94
https://doi.org/10.1016/j.bpj.2022.11.413

المؤلفون: Sagar A. Pandit, Sameer Varma, See Wing Chiu, James Kruczek, Eric Jakobsson

المصدر: Langmuir. 35:10522-10532

مصطلحات موضوعية: chemistry.chemical_classification, Biomolecule, Bilayer, Surfaces and Interfaces, Condensed Matter Physics, Ion, Divalent, Crystallography, chemistry.chemical_compound, Adsorption, Solvation shell, chemistry, Phosphatidylcholine, Electrochemistry, lipids (amino acids, peptides, and proteins), General Materials Science, Lipid bilayer, Spectroscopy

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a9862dbd90aa1ccfb237f7c195286999
https://doi.org/10.1021/acs.langmuir.9b01275

المؤلفون: Joseph P. R. O. Orgel, Jay D. Schieber, Sameer Varma

المصدر: International Journal of Molecular Sciences
International Journal of Molecular Sciences, Vol 22, Iss 9068, p 9068 (2021)
Volume 22
Issue 16

مصطلحات موضوعية: collagen, Proline, QH301-705.5, fibril assembly, Molecular Dynamics Simulation, Fibril, Hydroxylation, Catalysis, Article, Collagen Type I, Inorganic Chemistry, chemistry.chemical_compound, Molecular dynamics, Elastic Modulus, Molecule, Animals, Biology (General), Physical and Theoretical Chemistry, QD1-999, Molecular Biology, Spectroscopy, polymers, Hydrogen bond, Organic Chemistry, Hydrogen Bonding, General Medicine, molecular dynamics, Computer Science Applications, Rats, Chemistry, Monomer, chemistry, Biophysics, Type I collagen, Triple helix

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::71727d786a837cb51df3c2dae71a84de
http://europepmc.org/articles/PMC8396666

المؤلفون: David M. Rogers, Alexandre Tkatchenko, Sameer Varma, Sagar A. Pandit, Julián M. Delgado, Nalvi Duro

مصطلحات موضوعية: chemistry.chemical_classification, viruses, Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), Allosteric regulation, Physics [G04] [Physical, chemical, mathematical & earth Sciences], virus diseases, Thermal fluctuations, Peptide, respiratory tract diseases, Coupling (electronics), Molecular dynamics, Physique [G04] [Physique, chimie, mathématiques & sciences de la terre], chemistry, Biophysics, Spike (software development), Receptor

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a4693a9be4e962b9ba7523335135bf75
https://doi.org/10.22541/au.161409016.61284349/v1

المؤلفون: Dale Chaput, Stanley M. Stevens, Crystina L. Kriss, Sameer Varma, Nalvi Duro, Ashley E. Culver-Cochran, Owen W. Nadeau, Omar Chavez‐Chiang, Jennifer Guergues

المصدر: Journal of mass spectrometry : JMSREFERENCES. 56(6)

مصطلحات موضوعية: Male, Molecular Dynamics Simulation, 01 natural sciences, Histones, chemistry.chemical_compound, Histone H3, Mice, Tandem Mass Spectrometry, medicine, Animals, Amino Acid Sequence, Spectroscopy, Liver injury, Nitrates, biology, Ethanol, 010405 organic chemistry, Nitrotyrosine, 010401 analytical chemistry, Methylation, medicine.disease, 0104 chemical sciences, Cell biology, Chromatin, Mice, Inbred C57BL, Disease Models, Animal, Oxidative Stress, Histone, medicine.anatomical_structure, chemistry, Liver, Acetylation, Hepatocyte, Chemical and Drug Induced Liver Injury, Chronic, biology.protein, Tyrosine

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0080f583bbf8bafdae283c230c049aba
https://pubmed.ncbi.nlm.nih.gov/33942435

المؤلفون: Rossi, Mariana, Tkatchenko, Alexandre, Rempe, Susan B., Sameer, Varma

المصدر: Proceedings of the National Academy of Sciences of the United States of America, 110 (32), 12978-12983 (2013)

مصطلحات موضوعية: dispersion, ion channels, methylation, quantum chemistry density-functional theory DENSITY-FUNCTIONAL THEORY, POTASSIUM CHANNELS, K+ CHANNEL, SELECTIVITY FILTER, BA2+ BLOCK, COORDINATION, BARIUM, WATER, KCSA, CONDUCTION, Physical, chemical, mathematical & earth Sciences, Physique, chimie, mathématiques & sciences de la terre

Relation: urn:issn:0027-8424; https://orbilu.uni.lu/handle/10993/25133; info:hdl:10993/25133; info:pmid:23878238; wos:000322771100041

الاتاحة: https://orbilu.uni.lu/handle/10993/25133
https://orbilu.uni.lu/bitstream/10993/25133/1/Role%20of%20methyl-induced%20polarization%20in%20Ion%20binding.pdf
https://doi.org/10.1073/pnas.1302757110

المؤلفون: Sanim Rahman, Sameer Varma, Yasmine S. Al-Hamdani, Alexandre Tkatchenko, Vered Wineman-Fisher

المصدر: J Mol Biol

مصطلحات موضوعية: Protein domain, Lysine, Physics [G04] [Physical, chemical, mathematical & earth Sciences], Molecular Dynamics Simulation, Molecular mechanics, Methylation, Article, Protein–protein interaction, QM/MM, 03 medical and health sciences, Methyllysine, chemistry.chemical_compound, Structure-Activity Relationship, 0302 clinical medicine, Structural Biology, Polarizability, Molecular Biology, 030304 developmental biology, 0303 health sciences, Binding Sites, Proteins, Hydrogen Bonding, Molecular Docking Simulation, chemistry, Physique [G04] [Physique, chimie, mathématiques & sciences de la terre], Biophysics, Solvents, Carrier Proteins, 030217 neurology & neurosurgery, Protein Binding

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b2b05d84ef86eb6edd48465e32670366
https://europepmc.org/articles/PMC9801414/

المؤلفون: Julian A. Melendez, Vered Wineman-Fisher, Sameer Varma

المصدر: Biophysical Journal. 121:50a

مصطلحات موضوعية: Biophysics

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::3609db7caab52e4e96bd492cdb56b9b9
https://doi.org/10.1016/j.bpj.2021.11.2449

المؤلفون: Matthew W. Saunders, Vered Wineman-Fisher, Erik Jakobsson, Sameer Varma, Sagar A. Pandit

المصدر: Biophysical Journal. 121:368a

مصطلحات موضوعية: Biophysics

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::2a795ecace11eeca78e06882132d8519
https://doi.org/10.1016/j.bpj.2021.11.929