المؤلفون: Ahmed, Saleh Sakib, Shabab, Nahian, Samee, Md. Abul Hassan, Rahman, M. Sohel

مصطلحات موضوعية: Quantitative Biology - Quantitative Methods

URL الوصول: http://arxiv.org/abs/2408.00984

المؤلفون: Chumpitaz-Diaz, Luis, Samee, Md Abul Hassan, Pollard, Katherine S

المصدر: BMC Molecular and Cell Biology. 22(1)

مصطلحات موضوعية: Biochemistry and Cell Biology, Bioinformatics and Computational Biology, Biological Sciences, Genetics, 2.1 Biological and endogenous factors, Generic health relevance, Binding Sites, Chromatin Immunoprecipitation, Computational Biology, DNA-Binding Proteins, Humans, Nucleotide Motifs, Protein Binding, Sequence Analysis, DNA, Transcription Factors, Microbiology, Biochemistry & Molecular Biology, Biochemistry and cell biology

URL الوصول: https://escholarship.org/uc/item/8s064062

المؤلفون: Tseng, Yu-Jung, Kageyama, Yuki, Murdaugh, Rebecca L., Kitano, Ayumi, Kim, Jong Hwan, Hoegenauer, Kevin A., Tiessen, Jonathan, Smith, Mackenzie H., Uryu, Hidetaka, Takahashi, Koichi, Martin, James F., Samee, Md Abul Hassan, Nakada, Daisuke

المساهمون: U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute, U.S. Department of Health & Human Services | NIH | National Cancer Institute, U.S. Department of Health & Human Services | NIH | National Center for Research Resources, Cancer Prevention and Research Institute of Texas, U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases, American Society of Hematology, Sabin Family Fellow Award, MD Anderson Physician Scientist Program, MD Anderson AML/MDS Moonshot Program, Dr. John T. MacDonald Foundation, Vivian L. Smith Foundation

المصدر: Nature Communications ; volume 15, issue 1 ; ISSN 2041-1723

الاتاحة: http://dx.doi.org/10.1038/s41467-024-44718-0
https://www.nature.com/articles/s41467-024-44718-0.pdf
https://www.nature.com/articles/s41467-024-44718-0

المؤلفون: Liu, Zian, Samee, Md Abul Hassan

المساهمون: Liu, Zian, Samee, Md Abul Hassan

المصدر: Nucleic Acids Research, (2023-06-09)

مصطلحات موضوعية: bioinformatics, computational biology, DNA shape, transcription factor binding sites

Relation: https://codeberg.org/sameelab/mutprediction-with-shape; https://doi.org/10.5281/zenodo.8018847; https://doi.org/10.5281/zenodo.8018848; oai:zenodo.org:8018848

الاتاحة: https://doi.org/10.5281/zenodo.8018848

المؤلفون: Samee, Md Abul Hassan, Bruneau, Benoit G, Pollard, Katherine S

المصدر: Cell systems. 8(1)

مصطلحات موضوعية: Humans, Transcription Factors, DNA, Binding Sites, Algorithms, Nucleotide Motifs, ChIP-Seq, DNA binding protein, DNA shape, Gibbs sampling, HT-SELEX, algorithm, de novo shape motif discovery, sequence motif, shape motif, shape specificity, shape-only binding, shape-specific binding, transcription factor, Clinical Research, Brain Disorders, Generic Health Relevance, Biochemistry and Cell Biology

URL الوصول: https://escholarship.org/uc/item/5b0532ct

المؤلفون: Abrar, Mohammed Abid, Kaykobad, M, Rahman, M Saifur, Samee, Md Abul Hassan

المساهمون: Robinson, Peter

المصدر: Bioinformatics ; volume 39, issue 6 ; ISSN 1367-4811

الاتاحة: http://dx.doi.org/10.1093/bioinformatics/btad372
https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad372/50530873/btad372.pdf
https://academic.oup.com/bioinformatics/article-pdf/39/6/btad372/50664606/btad372.pdf

المؤلفون: Rahman, Mohammad Nuwaisir, Noman, Abdullah Al, Turza, Abir Mohammad, Abrar, Mohammed Abid, Samee, Md Abul Hassan, Rahman, M Saifur

المساهمون: Mathelier, Anthony, RISE Student Research

المصدر: Bioinformatics ; volume 39, issue 10 ; ISSN 1367-4811

الاتاحة: https://doi.org/10.1093/bioinformatics/btad594
https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad594/51770598/btad594.pdf
https://academic.oup.com/bioinformatics/article-pdf/39/10/btad594/52028101/btad594.pdf

المؤلفون: Khan, Samin Rahman, Sakib, Sadman, Rahman, M. Sohel, Samee, Md. Abul Hassan

المصدر: iScience ; volume 26, issue 2, page 105945 ; ISSN 2589-0042

الاتاحة: http://dx.doi.org/10.1016/j.isci.2023.105945
https://api.elsevier.com/content/article/PII:S2589004223000226?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S2589004223000226?httpAccept=text/plain

المؤلفون: Samee, Md Abul Hassan, Lydiard-Martin, Tara, Biette, Kelly M, Vincent, Ben J, Bragdon, Meghan D, Eckenrode, Kelly B, Wunderlich, Zeba, Estrada, Javier, Sinha, Saurabh, DePace, Angela H

المصدر: Cell reports. 21(1)

مصطلحات موضوعية: Blastoderm, Animals, Animals, Genetically Modified, Drosophila melanogaster, Homeodomain Proteins, Drosophila Proteins, Recombinant Fusion Proteins, Transcription Factors, Repressor Proteins, DNA, Gene Expression Regulation, Developmental, Binding Sites, Protein Binding, Lac Operon, Thermodynamics, Models, Genetic, Enhancer Elements, Genetic, bag of sites model, enhancer, enhancer-level model, fused enhancer, locus-level model, quenching model, thermodynamic model, two-tier model, Genetically Modified, Gene Expression Regulation, Developmental, Models, Genetic, Enhancer Elements, Genetics, Generic Health Relevance, Biochemistry and Cell Biology, Medical Physiology

URL الوصول: https://escholarship.org/uc/item/0z8137qv

المؤلفون: Samee, Md. Abul Hassan

المصدر: Cell Systems ; volume 13, issue 5, page 351-352 ; ISSN 2405-4712

الاتاحة: http://dx.doi.org/10.1016/j.cels.2022.04.004
https://api.elsevier.com/content/article/PII:S2405471222001697?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S2405471222001697?httpAccept=text/plain

المؤلفون: Grisanti Canozo, Francisco Jose, Zuo, Zhen, Martin, James F., Samee, Md. Abul Hassan

المصدر: Cell Systems ; volume 13, issue 1, page 58-70.e5 ; ISSN 2405-4712

الاتاحة: http://dx.doi.org/10.1016/j.cels.2021.09.004
https://api.elsevier.com/content/article/PII:S2405471221003410?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S2405471221003410?httpAccept=text/plain

المؤلفون: Long, Hali, Steimle, Jeffrey D, Grisanti Canozo, Francisco Jose, Kim, Jong Hwan, Li, Xiao, Morikawa, Yuka, Park, Minjun, Turaga, Diwakar, Adachi, Iki, Wythe, Joshua D, Samee, Md Abul Hassan, Martin, James F

المصدر: Faculty and Staff Publications

مصطلحات موضوعية: Mice, Humans, Animals, Child, Endothelial Cells, Myocardial Infarction, Heart, Heart Failure, Signal Transduction, Biochemistry, Biophysics, and Structural Biology, Biology, Cardiology, Cardiovascular Diseases, Diseases, Integrative Medicine, Medical Sciences, Medical Specialties, Medicine and Health Sciences

وصف الملف: application/pdf

Relation: https://digitalcommons.library.tmc.edu/baylor_docs/683; https://digitalcommons.library.tmc.edu/context/baylor_docs/article/1682/viewcontent/LSA_2022_01870_compressed.pdf

الاتاحة: https://digitalcommons.library.tmc.edu/baylor_docs/683
https://doi.org/10.26508/lsa.202201870
https://digitalcommons.library.tmc.edu/context/baylor_docs/article/1682/viewcontent/LSA_2022_01870_compressed.pdf

المؤلفون: Yafi, Mashrur Ahmed, Hisham, Md Hasibul Husain, Grisanti, Francisco, Martin, James F, Rahman, Atif, Samee, Md Abul Hassan

المصدر: Faculty and Staff Publications

مصطلحات موضوعية: In Situ Hybridization, Fluorescence, Gene Expression Profiling, Transcriptome, Biochemistry, Biophysics, and Structural Biology, Biology, Life Sciences, Medical Sciences, Medical Specialties, Medicine and Health Sciences

وصف الملف: application/pdf

Relation: https://digitalcommons.library.tmc.edu/baylor_docs/702; https://digitalcommons.library.tmc.edu/context/baylor_docs/article/1686/viewcontent/13059_2024_Article_3185.pdf

الاتاحة: https://digitalcommons.library.tmc.edu/baylor_docs/702
https://doi.org/10.1186/s13059-024-03185-y
https://digitalcommons.library.tmc.edu/context/baylor_docs/article/1686/viewcontent/13059_2024_Article_3185.pdf

المؤلفون: Li, Rich Gang, Li, Xiao, Morikawa, Yuka, Grisanti-Canozo, Francisco J, Meng, Fansen, Tsai, Chang-Ru, Zhao, Yi, Liu, Lin, Kim, Jong, Xie, Bing, Klysik, Elzbieta, Liu, Shijie, Samee, Md Abul Hassan, Martin, James F

المصدر: Faculty and Staff Publications

مصطلحات موضوعية: Biochemistry, Biophysics, and Structural Biology, Biology, Integrative Medicine, Medical Sciences, Medical Specialties, Medicine and Health Sciences

وصف الملف: application/pdf

Relation: https://digitalcommons.library.tmc.edu/baylor_docs/684; https://digitalcommons.library.tmc.edu/context/baylor_docs/article/1681/viewcontent/nihms_1967986_compressed.pdf

الاتاحة: https://digitalcommons.library.tmc.edu/baylor_docs/684
https://doi.org/10.1038/s44161-024-00428-w
https://digitalcommons.library.tmc.edu/context/baylor_docs/article/1681/viewcontent/nihms_1967986_compressed.pdf

المؤلفون: Toufikuzzaman, Md¹ (AUTHOR), Samee, Md Abul Hassan² (AUTHOR), Rahman, M Sohel¹ (AUTHOR) sohel.kcl@gmail.com

المصدر: Briefings in Bioinformatics. Mar2024, Vol. 25 Issue 2, p1-10. 10p.

مصطلحات موضوعية: *TECHNOLOGICAL innovations, *FORECASTING, DEEP learning, RECURRENT neural networks, CRISPRS, GENETIC algorithms

المؤلفون: Yafi, Mashrur Ahmed, Hisham, Md. Hasibul Husain, Grisanti, Francisco, Martin, James F., Rahman, Atif, Samee, Md. Abul Hassan

المصدر: Genome Biology; 2/26/2024, Vol. 25 Issue 1, p1-17, 17p

المؤلفون: Samee, Md Abul Hassan

المصدر: Faculty and Staff Publications

مصطلحات موضوعية: Humans, Transcription Factors, DNA-Binding Proteins, Binding Sites, Biochemistry, Biophysics, and Structural Biology, Biology, Life Sciences, Medical Sciences, Medical Specialties, Medicine and Health Sciences

وصف الملف: application/pdf

Relation: https://digitalcommons.library.tmc.edu/baylor_docs/717; https://digitalcommons.library.tmc.edu/context/baylor_docs/article/1711/viewcontent/mbc_34_pe4.pdf

الاتاحة: https://digitalcommons.library.tmc.edu/baylor_docs/717
https://doi.org/10.1091/mbc.E22-08-0325
https://digitalcommons.library.tmc.edu/context/baylor_docs/article/1711/viewcontent/mbc_34_pe4.pdf

المؤلفون: Lutter, Jacob C, Batchev, Andrea L, Ortiz, Caitlyn J, Sertage, Alexander G, Romero, Jonathan, Subasinghe, S A Amali S, Pedersen, Steen E, Samee, Md Abul Hassan, Pautler, Robia G, Allen, Matthew J

المصدر: Faculty and Staff Publications

مصطلحات موضوعية: Humans, Europium, Contrast Media, Oxygen, Fluorocarbons, Magnetic Resonance Imaging, Hypoxia, EuII, MRI, perfluorocarbons, Biochemistry, Biophysics, and Structural Biology, Biology, Life Sciences, Medical Sciences, Medical Specialties, Medicine and Health Sciences, Neurosciences

وصف الملف: application/pdf

Relation: https://digitalcommons.library.tmc.edu/baylor_docs/693; https://digitalcommons.library.tmc.edu/context/baylor_docs/article/1695/viewcontent/nihms_1880255.pdf; https://digitalcommons.library.tmc.edu/context/baylor_docs/article/1695/filename/0/type/additional/viewcontent/nihms_1880255_f0001.jpg

الاتاحة: https://digitalcommons.library.tmc.edu/baylor_docs/693
https://doi.org/10.1002/adhm.202203209
https://digitalcommons.library.tmc.edu/context/baylor_docs/article/1695/viewcontent/nihms_1880255.pdf
https://digitalcommons.library.tmc.edu/context/baylor_docs/article/1695/filename/0/type/additional/viewcontent/nihms_1880255_f0001.jpg

المؤلفون: Li, Rich Gang, Li, Xiao, Grisanti-Canozo, Francisco, Morikawa, Yuka, Meng, Fansen, Kim, Jong H, Xie, Bing, Klysik, Elzbieta, Liu, Shijie, Samee, Md Abul Hassan, Martin, James F

المصدر: Circulation Research ; volume 133, issue Suppl_1 ; ISSN 0009-7330 1524-4571

الاتاحة: http://dx.doi.org/10.1161/res.133.suppl_1.p1068

المؤلفون: Larina, Maria, Singh, Salvi, Samee, Md. Abul Hassan

مصطلحات موضوعية: bioscience, genetics

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::964e59a8669cec15cf0a38a615259831