المؤلفون: Ishchuk, Olena P., Domenzain, Iván, Sánchez, Benjamín J., Muñiz-Paredes, Facundo, Martínez, José L., Nielsen, Jens, Petranovic, Dina

المصدر: Proceedings of the National Academy of Sciences of the United States of America, 2022 Jul . 119(30), 1-9.

URL الوصول: https://www.jstor.org/stable/27172074

المؤلفون: Zhang, Chengyu, Sánchez, Benjamín J., Li, Feiran, Eiden, Cheng Wei Quan, Scott, William T., Liebal, Ulf W., Blank, Lars M., Mengers, Hendrik G., Anton, Mihail, Rangel, Albert Tafur, Mendoza, Sebastián N., Zhang, Lixin, Nielsen, Jens, Lu, Hongzhong, Kerkhoven, Eduard J.

المصدر: Zhang , C , Sánchez , B J , Li , F , Eiden , C W Q , Scott , W T , Liebal , U W , Blank , L M , Mengers , H G , Anton , M , Rangel , A T , Mendoza , S N , Zhang , L , Nielsen , J , Lu , H & Kerkhoven , E J 2024 , ' Yeast9 : a consensus genome-scale metabolic model for S. cerevisiae curated by the community ' , Molecular Systems Biology , vol. 20 , no. 10 , pp. ....

مصطلحات موضوعية: Genome-scale Metabolic Models, Machine Learning, Multi-omics Integration, Saccharomyces cerevisiae

الاتاحة: https://research.vu.nl/en/publications/a96e679a-0f74-4368-a683-8e4a96617a4e
https://doi.org/10.1038/s44320-024-00060-7
https://hdl.handle.net/1871.1/a96e679a-0f74-4368-a683-8e4a96617a4e
http://www.scopus.com/inward/record.url?scp=85200947353&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85200947353&partnerID=8YFLogxK

المؤلفون: Zhang, Jie, Petersen, Søren D, Radivojevic, Tijana, Ramirez, Andrés, Pérez-Manríquez, Andrés, Abeliuk, Eduardo, Sánchez, Benjamín J, Costello, Zak, Chen, Yu, Fero, Michael J, Martin, Hector Garcia, Nielsen, Jens, Keasling, Jay D, Jensen, Michael K

المصدر: Nature communications. 11(1)

مصطلحات موضوعية: Saccharomyces cerevisiae, Amino Acids, Tryptophan, Biosensing Techniques, Biochemical Phenomena, Genotype, Phenotype, Algorithms, Models, Biological, Metabolic Networks and Pathways, Metabolic Engineering, Machine Learning, Models, Biological

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2932x9xs

المؤلفون: Lieven, Christian, Beber, Moritz E, Olivier, Brett G, Bergmann, Frank T, Ataman, Meric, Babaei, Parizad, Bartell, Jennifer A, Blank, Lars M, Chauhan, Siddharth, Correia, Kevin, Diener, Christian, Dräger, Andreas, Ebert, Birgitta E, Edirisinghe, Janaka N, Faria, José P, Feist, Adam M, Fengos, Georgios, Fleming, Ronan MT, García-Jiménez, Beatriz, Hatzimanikatis, Vassily, van Helvoirt, Wout, Henry, Christopher S, Hermjakob, Henning, Herrgård, Markus J, Kaafarani, Ali, Kim, Hyun Uk, King, Zachary, Klamt, Steffen, Klipp, Edda, Koehorst, Jasper J, König, Matthias, Lakshmanan, Meiyappan, Lee, Dong-Yup, Lee, Sang Yup, Lee, Sunjae, Lewis, Nathan E, Liu, Filipe, Ma, Hongwu, Machado, Daniel, Mahadevan, Radhakrishnan, Maia, Paulo, Mardinoglu, Adil, Medlock, Gregory L, Monk, Jonathan M, Nielsen, Jens, Nielsen, Lars Keld, Nogales, Juan, Nookaew, Intawat, Palsson, Bernhard O, Papin, Jason A, Patil, Kiran R, Poolman, Mark, Price, Nathan D, Resendis-Antonio, Osbaldo, Richelle, Anne, Rocha, Isabel, Sánchez, Benjamín J, Schaap, Peter J, Sheriff, Rahuman S Malik, Shoaie, Saeed, Sonnenschein, Nikolaus, Teusink, Bas, Vilaça, Paulo, Vik, Jon Olav, Wodke, Judith AH, Xavier, Joana C, Yuan, Qianqian, Zakhartsev, Maksim, Zhang, Cheng

المصدر: Nature Biotechnology. 38(4)

مصطلحات موضوعية: Biological Sciences, Industrial Biotechnology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/6wf4v076
https://escholarship.org/content/qt6wf4v076/qt6wf4v076.pdf

المؤلفون: Cachera, Paul, Olsson, Helén, Coumou, Hilde, Jensen, Mads L, Sánchez, Benjamín J., Strucko, Tomas, van den Broek, Marcel, Daran, Jean-Marc, Jensen, Michael K., Sonnenschein, Nikolaus, Lisby, Michael, Mortensen, Uffe H.

المصدر: Cachera , P , Olsson , H , Coumou , H , Jensen , M L , Sánchez , B J , Strucko , T , van den Broek , M , Daran , J-M , Jensen , M K , Sonnenschein , N , Lisby , M & Mortensen , U H 2023 , ' CRI-SPA: a high-throughput method for systematic genetic editing of yeast libraries ' , Nucleic Acids Research , vol. 51 , no. 17 , e91 . https://doi.org/10.1093/nar/gkad656

وصف الملف: application/pdf

Relation: https://orbit.dtu.dk/en/publications/a053afc6-5490-4c85-bee5-4d651188b398

الاتاحة: https://orbit.dtu.dk/en/publications/a053afc6-5490-4c85-bee5-4d651188b398
https://doi.org/10.1093/nar/gkad656
https://backend.orbit.dtu.dk/ws/files/336424409/gkad656.pdf

المؤلفون: Karlsen, Signe T, Rau, Martin H, Sánchez, Benjamín J, Jensen, Kristian, Zeidan, Ahmad A

المصدر: FEMS Microbiology Reviews ; volume 47, issue 4 ; ISSN 1574-6976

الاتاحة: http://dx.doi.org/10.1093/femsre/fuad030
https://academic.oup.com/femsre/advance-article-pdf/doi/10.1093/femsre/fuad030/50536644/fuad030.pdf
https://academic.oup.com/femsre/article-pdf/47/4/fuad030/50976309/fuad030.pdf

المؤلفون: Zhang, Chengyu, Sánchez, Benjamín J, Li, Feiran, Eiden, Cheng Wei Quan, Scott, William T, Liebal, Ulf W, Blank, Lars M, Mengers, Hendrik G, Anton, Mihail, Rangel, Albert Tafur, Mendoza, Sebastián N, Zhang, Lixin, Nielsen, Jens, Lu, Hongzhong, Kerkhoven, Eduard J

المصدر: Molecular Systems Biology; Oct2024, Vol. 20 Issue 10, p1134-1150, 17p

مصطلحات موضوعية: OSMOTIC pressure, TRANSCRIPTOMES, CARBON metabolism, METABOLIC models, SACCHAROMYCES cerevisiae

المؤلفون: Lieven, Christian, Beber, Moritz E., Olivier, Brett G., Bergmann, Frank T., Ataman, Meric, Babaei, Parizad, Bartell, Jennifer A., Blank, Lars M., Chauhan, Siddharth, Correia, Kevin, Diener, Christian, Dräger, Andreas, Ebert, Birgitta E., Edirisinghe, Janaka N., Faria, José P., Feist, Adam M., Fengos, Georgios, Fleming, Ronan M. T., García-Jiménez, Beatriz, Hatzimanikatis, Vassily, van Helvoirt, Wout, Henry, Christopher S., Hermjakob, Henning, Herrgård, Markus J., Kaafarani, Ali, Kim, Hyun Uk, King, Zachary, Klamt, Steffen, Klipp, Edda, Koehorst, Jasper J., König, Matthias, Lakshmanan, Meiyappan, Lee, Dong-Yup, Lee, Sang Yup, Lee, Sunjae, Lewis, Nathan E., Liu, Filipe, Ma, Hongwu, Machado, Daniel, Mahadevan, Radhakrishnan, Maia, Paulo, Mardinoglu, Adil, Medlock, Gregory L., Monk, Jonathan M., Nielsen, Jens, Nielsen, Lars Keld, Nogales, Juan, Nookaew, Intawat, Palsson, Bernhard O., Papin, Jason A., Patil, Kiran R., Poolman, Mark, Price, Nathan D., Resendis-Antonio, Osbaldo, Richelle, Anne, Rocha, I., Sánchez, Benjamín J., Schaap, Peter J., Malik Sheriff, Rahuman S., Shoaie, Saeed, Sonnenschein, Nikolaus, Teusink, Bas, Vilaça, Paulo Ricardo Carvalho, Vik, Jon Olav, Wodke, Judith A. H., Xavier, Joana C., Yuan, Qianqian, Zakhartsev, Maksim, Zhang, Cheng

المساهمون: Universidade do Minho

مصطلحات موضوعية: Science & Technology

وصف الملف: application/pdf

Relation: Lieven, Christian; Beber, Moritz E.; Olivier, Brett G.; Bergmann, Frank T.; Ataman, Meric; Babaei, Parizad; Bartell, Jennifer A.; Blank, Lars M.; Chauhan, Siddharth; Correia, Kevin; Diener, Christian; Dräger, Andreas; Ebert, Birgitta E.; Edirisinghe, Janaka N.; Faria, José P.; Feist, Adam M.; Fengos, Georgios; Fleming, Ronan M. T.; García-Jiménez, Beatriz; Hatzimanikatis, Vassily; van Helvoirt, Wout; Henry, Christopher S.; Hermjakob, Henning; Herrgård, Markus J.; Kaafarani, Ali; Kim, Hyun Uk; King, Zachary; Klamt, Steffen; Klipp, Edda; Koehorst, Jasper J.; König, Matthias; Lakshmanan, Meiyappan; Lee, Dong-Yup; Lee, Sang Yup; Lee, Sunjae; Lewis, Nathan E.; Liu, Filipe; Ma, Hongwu; Machado, Daniel; Mahadevan, Radhakrishnan; Maia, Paulo; Mardinoglu, Adil; Medlock, Gregory L.; Monk, Jonathan M.; Nielsen, Jens; Nielsen, Lars Keld; Nogales, Juan; Nookaew, Intawat; Palsson, Bernhard O.; Papin, Jason A.; Patil, Kiran R.; Poolman, Mark; Price, Nathan D.; Resendis-Antonio, Osbaldo; Richelle, Anne; Rocha, Isabel; Sánchez, Benjamín J.; Schaap, Peter J.; Malik Sheriff, Rahuman S.; Shoaie, Saeed; Sonnenschein, Nikolaus; Teusink, Bas; Vilaça, P.; Vik, Jon Olav; Wodke, Judith A. H.; Xavier, Joana C.; Yuan, Qianqian; Zakhartsev, Maksim; Zhang, Cheng, MEMOTE for standardized genome-scale metabolic model testing. Nature Biotechnology, 38, 272-276, 2020; 1087-0156; 32123384

الاتاحة: http://hdl.handle.net/1822/64418

المؤلفون: Ishchuka, Olena P., Domenzain, Ivan, Sanchez, Benjamín J., Muñiz-Paredes, Facundo, Martínez, Jose L., Nielsen, Jens, Petranovic, Dina

المصدر: Ishchuka , O P , Domenzain , I , Sanchez , B J , Muñiz-Paredes , F , Martínez , J L , Nielsen , J & Petranovic , D 2022 , ' Genome-scale modeling drives 70-fold improvement of intracellular heme production in Saccharomyces cerevisiae ' , Proceedings of the National Academy of Sciences of the United States of America , vol. 119 , no. 30 , e2108245119 . https://doi.org/10.1073/pnas.2108245119

مصطلحات موضوعية: Genome-scale modeling, Saccharomyces cerevisiae, Metabolic engineering, Heme ligand-binding biosensor

وصف الملف: application/pdf

Relation: https://orbit.dtu.dk/en/publications/abd35e2e-92e5-4feb-b08c-8c4d4483e8b2

الاتاحة: https://orbit.dtu.dk/en/publications/abd35e2e-92e5-4feb-b08c-8c4d4483e8b2
https://doi.org/10.1073/pnas.2108245119
https://backend.orbit.dtu.dk/ws/files/282622355/pnas.2108245119.pdf

المؤلفون: Wright, Naia Risager, Jessop-Fabre, Mathew M., Sánchez, Benjamin J., Wulff, Tune, Workman, Christopher T., Rønnest, Nanna Petersen, Sonnenschein, Nikolaus

المصدر: Wright , N R , Jessop-Fabre , M M , Sánchez , B J , Wulff , T , Workman , C T , Rønnest , N P & Sonnenschein , N 2022 , ' Emergence of Phenotypically Distinct Subpopulations Is a Factor in Adaptation of Recombinant Saccharomyces cerevisiae under Glucose-Limited Conditions ' , Applied and Environmental Microbiology , vol. 88 , no. 7 , e0230721 . https://doi.org/10.1128/aem.02307-21

مصطلحات موضوعية: Population heterogeneity, Heterologous protein production, Saccharomyces cerevisae, Chemostat cultivation, Proteomics, Flow cymetry

وصف الملف: application/pdf

Relation: https://orbit.dtu.dk/en/publications/cc466d56-fc4a-4c04-8557-4987a1863cbf

الاتاحة: https://orbit.dtu.dk/en/publications/cc466d56-fc4a-4c04-8557-4987a1863cbf
https://doi.org/10.1128/aem.02307-21
https://backend.orbit.dtu.dk/ws/files/277300167/2021.01.18.427050v1.full.pdf
https://backend.orbit.dtu.dk/ws/files/273802762/aem.02307_21.pdf

المؤلفون: Navarrete, Clara, Sánchez, Benjamín J., Savickas, Simonas, Martínez, José L.

المصدر: Navarrete , C , Sánchez , B J , Savickas , S & Martínez , J L 2022 , ' DebaryOmics: an integrative –omics study to understand the halophilic behaviour of Debaryomyces hansenii ' , Microbial Biotechnology , vol. 15 , no. 4 , pp. 1133-1151 . https://doi.org/10.1111/1751-7915.13954

وصف الملف: application/pdf

Relation: https://orbit.dtu.dk/en/publications/0f321e8f-0329-4ab7-9404-6e1847241fc0

الاتاحة: https://orbit.dtu.dk/en/publications/0f321e8f-0329-4ab7-9404-6e1847241fc0
https://doi.org/10.1111/1751-7915.13954
https://backend.orbit.dtu.dk/ws/files/273008941/Microbial_Biotechnology_2021_Navarrete_DebaryOmics_an_integrative_omics_study_to_understand_the_halophilic.pdf

المؤلفون: Sanchez, Benjamin J., Perez-Correa, Jose R., Agosin, Eduardo

جغرافية الموضوع: SAN DIEGO

Relation: instname: Conicyt; reponame: Repositorio Digital RI2.0; info:eu-repo/grantAgreement/Fondecyt/1130822; info:eu-repo/semantics/dataset/hdl.handle.net/10533/93477; https://doi.org/10.1016/j.ymben.2014.07.004; 1130822; WOS:000341312200016; https://hdl.handle.net/10533/131995

الاتاحة: https://hdl.handle.net/10533/131995

المؤلفون: Xia, Jianye, Sánchez, Benjamin J., Chen, Yu, Campbell, Kate, Kasvandik, Sergo, Nielsen, Jens

المساهمون: National Natural Science Foundation of China

المصدر: Nature Communications ; volume 13, issue 1 ; ISSN 2041-1723

الاتاحة: http://dx.doi.org/10.1038/s41467-022-30513-2
https://www.nature.com/articles/s41467-022-30513-2.pdf
https://www.nature.com/articles/s41467-022-30513-2

المؤلفون: Mol, Viviënne, Bennett, Martyn, Sánchez, Benjamín J, Lisowska, Beata K, Herrgård, Markus J, Nielsen, Alex Toftgaard, Leak, David J, Sonnenschein, Nikolaus

المصدر: Mol , V , Bennett , M , Sánchez , B J , Lisowska , B K , Herrgård , M J , Nielsen , A T , Leak , D J & Sonnenschein , N 2021 , ' Genome-scale metabolic modeling of P. thermoglucosidasius NCIMB 11955 reveals metabolic bottlenecks in anaerobic metabolism ' , Metabolic Engineering , vol. 65 , pp. 123-134 . https://doi.org/10.1016/j.ymben.2021.03.002

Relation: https://researchportal.bath.ac.uk/en/publications/f75bc667-a7e0-455e-9840-a4c09aeac114

الاتاحة: https://researchportal.bath.ac.uk/en/publications/f75bc667-a7e0-455e-9840-a4c09aeac114
https://doi.org/10.1016/j.ymben.2021.03.002

المؤلفون: Sánchez, Benjamín J., Lahtvee, Petri Jaan, Campbell, Kate, Kasvandik, Sergo, Yu, Rosemary, Domenzain, Iván, Zelezniak, Aleksej, Nielsen, Jens

المصدر: Sánchez , B J , Lahtvee , P J , Campbell , K , Kasvandik , S , Yu , R , Domenzain , I , Zelezniak , A & Nielsen , J 2021 , ' Benchmarking accuracy and precision of intensity-based absolute quantification of protein abundances in Saccharomyces cerevisiae ' , Proteomics , vol. 21 , no. 6 , 2000093 . https://doi.org/10.1002/pmic.202000093

مصطلحات موضوعية: Absolute proteomics, Batch effect, iBAQ, Mass spectrometry, UPS2

وصف الملف: application/pdf

Relation: https://orbit.dtu.dk/en/publications/3702189d-7dbd-4a98-bdaa-bb18166267b3

الاتاحة: https://orbit.dtu.dk/en/publications/3702189d-7dbd-4a98-bdaa-bb18166267b3
https://doi.org/10.1002/pmic.202000093
https://backend.orbit.dtu.dk/ws/files/246647951/pmic.202000093.pdf

المؤلفون: Lieven, Christian, Beber, Moritz E., Olivier, Brett G., Bergmann, Frank T., Ataman, Meric, Babaei, Parizad, Bartell, Jennifer A., Blank, Lars M., Chauhan, Siddharth, Correia, Kevin, Diener, Christian, Dräger, Andreas, Ebert, Birgitta E., Edirisinghe, Janaka N., Faria, José P., Feist, Adam M., Fengos, Georgios, Fleming, Ronan M.T., García-Jiménez, Beatriz, Hatzimanikatis, Vassily, van Helvoirt, Wout, Henry, Christopher S., Hermjakob, Henning, Herrgård, Markus J., Kaafarani, Ali, Kim, Hyun Uk, King, Zachary, Klamt, Steffen, Klipp, Edda, Koehorst, Jasper J., König, Matthias, Lakshmanan, Meiyappan, Lee, Dong Yup, Lee, Sang Yup, Lee, Sunjae, Lewis, Nathan E., Liu, Filipe, Ma, Hongwu, Machado, Daniel, Mahadevan, Radhakrishnan, Maia, Paulo, Mardinoglu, Adil, Medlock, Gregory L., Monk, Jonathan M., Nielsen, Jens, Nielsen, Lars Keld, Nogales, Juan, Nookaew, Intawat, Palsson, Bernhard O., Papin, Jason A., Patil, Kiran R., Poolman, Mark, Price, Nathan D., Resendis-Antonio, Osbaldo, Richelle, Anne, Rocha, Isabel, Sánchez, Benjamín J., Schaap, Peter J., Sheriff, Rahuman S.Malik, Shoaie, Saeed, Sonnenschein, Nikolaus, Teusink, Bas, Vilaça, Paulo, Vik, Jon Olav, Wodke, Judith A.H., Xavier, Joana C., Yuan, Qianqian, Zakhartsev, Maksim, Zhang, Cheng

المصدر: Lieven , C , Beber , M E , Olivier , B G , Bergmann , F T , Ataman , M , Babaei , P , Bartell , J A , Blank , L M , Chauhan , S , Correia , K , Diener , C , Dräger , A , Ebert , B E , Edirisinghe , J N , Faria , J P , Feist , A M , Fengos , G , Fleming , R M T , García-Jiménez , B , Hatzimanikatis , V , van Helvoirt , W , Henry , C ....

مصطلحات موضوعية: /dk/atira/pure/sustainabledevelopmentgoals/peace_justice_and_strong_institutions, name=SDG 16 - Peace, Justice and Strong Institutions

الاتاحة: https://research.vu.nl/en/publications/f3ea086e-1317-42d1-abb5-c6692311c698
https://doi.org/10.1038/s41587-020-0477-4
https://hdl.handle.net/1871.1/f3ea086e-1317-42d1-abb5-c6692311c698
http://www.scopus.com/inward/record.url?scp=85082184324&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85082184324&partnerID=8YFLogxK

المؤلفون: Lu, Hongzhong, Li, Feiran, Sánchez, Benjamín J., Zhu, Zhengming, Li, Gang, Domenzain, Iván, Marcišauskas, Simonas, Anton, Petre Mihail, Lappa, Dimitra, Lieven, Christian, Beber, Moritz Emanuel, Sonnenschein, Nikolaus, Kerkhoven, Eduard J., Nielsen, Jens

المصدر: Nature Communications ; volume 11, issue 1 ; ISSN 2041-1723

الاتاحة: https://doi.org/10.1038/s41467-020-19358-9
https://www.nature.com/articles/s41467-020-19358-9.pdf
https://www.nature.com/articles/s41467-020-19358-9

المؤلفون: Cachera, Paul (author), Olsson, Helén (author), Coumou, Hilde (author), Jensen, Mads L. (author), Sánchez, Benjamín J. (author), Strucko, Tomas (author), van den Broek, M.A. (author), Daran, J.G. (author), Jensen, Michael K. (author), Sonnenschein, Nikolaus (author), Lisby, Michael (author), Mortensen, Uffe H. (author)

مصطلحات الفهرس: journal article

URL: http://resolver.tudelft.nl/uuid:b0ec964f-e7b9-4765-bb4a-e5abee194751
http://www.scopus.com/inward/record.url?scp=85172424180&partnerID=8YFLogxK
http://www.scopus.com/inward/record.url?scp=85172424180&partnerID=8YFLogxK
Nucleic acids research--0305-1048--4d95e864-a4e8-44e0-bae5-5024c05fe22e

المؤلفون: Cachera, Paul, Olsson, Helén, Coumou, Hilde, Jensen, Mads L, Sánchez, Benjamín j, Strucko, Tomas, Van den broek, Marcel, Daran, Jean-marc, Jensen, Michael k, Sonnenschein, Nikolaus, Lisby, Michael, Mortensen, Uffe h

المصدر: Cachera , P , Olsson , H , Coumou , H , Jensen , M L , Sánchez , B , Strucko , T , Van den broek , M , Daran , J , Jensen , M , Sonnenschein , N , Lisby , M & Mortensen , U 2023 , ' CRI-SPA : a high-throughput method for systematic genetic editing of yeast libraries ' , Nucleic acids symposium series , vol. 51 , no. 17 , e91 .

مصطلحات الفهرس: article

URL: https://curis.ku.dk/portal/da/publications/crispa(e0755fc4-0cc6-438a-aba9-e113e16fde44).html
https://doi.org/10.1093/nar/gkad656
https://curis.ku.dk/ws/files/367749140/gkad656.pdf

المؤلفون: Lu, Hongzhong, Li, Feiran, Sánchez, Benjamin J., Zhu, Zhengming, Li, Gang, Domenzain, Iván, Marcisauskas, Simonas, Anton, Petre Mihail, Lappa, Dimitra, Lieven, Christian, Beber, Moritz Emanuel, Sonnenschein, Nikolaus, Kerkhoven, Eduard J, Nielsen, Jens

Relation: https://zenodo.org/communities/chassy-h2020; oai:zenodo.org:3373767

الاتاحة: https://doi.org/10.1038/s41467-019-11581-3