المؤلفون: David A. Coil (7382090), Timothy Albertson (8417103), Shefali Banerjee (11021409), Greg Brennan (534922), A. J. Campbell (11021412), Stuart H. Cohen (11021415), Satya Dandekar (61929), Samuel L. Díaz-Muñoz (11021418), Jonathan A. Eisen (7382087), Tracey Goldstein (329930), Ivy R. Jose (11021421), Maya Juarez (11021424), Brandt A. Robinson (11021427), Stefan Rothenburg (66518), Christian Sandrock (10770242), Ana M. M. Stoian (4984688), Daniel G. Tompkins (11021430), Alexandre Tremeau-Bravard (11021433), Angela Haczku (87487)

مصطلحات موضوعية: Microbiology, Cell Biology, Molecular Biology, Biotechnology, Evolutionary Biology, Mental Health, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, staff congregation areas, COVID -19 patient, surface swabs, Vero cell cultures, SARS-CoV -2 qRT-PCR positivity, sequencing, SARS-CoV -2 RNA, COVID -19 transmission, UC Davis Rationale, SARS-CoV -2 contamination, SARS-CoV -2 genomes, Davis Medical Center, hospital surface samples, infectivity, patient management practices, SARS-CoV -2 detection, cytopathic effects, SARS-CoV -2 genome sequences

Relation: https://figshare.com/articles/journal_contribution/Locations_of_samples_positive_for_SARS-CoV-2_by_qRT-PCR_/14840160

الاتاحة: https://doi.org/10.1371/journal.pone.0253578.s001

المؤلفون: David A. Coil (7382090), Timothy Albertson (8417103), Shefali Banerjee (11021409), Greg Brennan (534922), A. J. Campbell (11021412), Stuart H. Cohen (11021415), Satya Dandekar (61929), Samuel L. Díaz-Muñoz (11021418), Jonathan A. Eisen (7382087), Tracey Goldstein (329930), Ivy R. Jose (11021421), Maya Juarez (11021424), Brandt A. Robinson (11021427), Stefan Rothenburg (66518), Christian Sandrock (10770242), Ana M. M. Stoian (4984688), Daniel G. Tompkins (11021430), Alexandre Tremeau-Bravard (11021433), Angela Haczku (87487)

مصطلحات موضوعية: Microbiology, Cell Biology, Molecular Biology, Biotechnology, Evolutionary Biology, Mental Health, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, staff congregation areas, COVID -19 patient, surface swabs, Vero cell cultures, SARS-CoV -2 qRT-PCR positivity, sequencing, SARS-CoV -2 RNA, COVID -19 transmission, UC Davis Rationale, SARS-CoV -2 contamination, SARS-CoV -2 genomes, Davis Medical Center, hospital surface samples, infectivity, patient management practices, SARS-CoV -2 detection, cytopathic effects, SARS-CoV -2 genome sequences

Relation: https://figshare.com/articles/journal_contribution/Locations_and_qRT-PCR_results_for_all_samples_collected_/14840163

الاتاحة: https://doi.org/10.1371/journal.pone.0253578.s002

المؤلفون: David A. Coil (7382090), Timothy Albertson (8417103), Shefali Banerjee (11021409), Greg Brennan (534922), A. J. Campbell (11021412), Stuart H. Cohen (11021415), Satya Dandekar (61929), Samuel L. Díaz-Muñoz (11021418), Jonathan A. Eisen (7382087), Tracey Goldstein (329930), Ivy R. Jose (11021421), Maya Juarez (11021424), Brandt A. Robinson (11021427), Stefan Rothenburg (66518), Christian Sandrock (10770242), Ana M. M. Stoian (4984688), Daniel G. Tompkins (11021430), Alexandre Tremeau-Bravard (11021433), Angela Haczku (87487)

مصطلحات موضوعية: Microbiology, Cell Biology, Molecular Biology, Biotechnology, Evolutionary Biology, Mental Health, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, staff congregation areas, COVID -19 patient, surface swabs, Vero cell cultures, SARS-CoV -2 qRT-PCR positivity, sequencing, SARS-CoV -2 RNA, COVID -19 transmission, UC Davis Rationale, SARS-CoV -2 contamination, SARS-CoV -2 genomes, Davis Medical Center, hospital surface samples, infectivity, patient management practices, SARS-CoV -2 detection, cytopathic effects, SARS-CoV -2 genome sequences

Relation: https://figshare.com/articles/journal_contribution/Sequencing_information_for_5_MinION_runs_detailing_number_of_raw_reads_generated_and_the_amount_retained_at_each_step_of_the_bioinformatics_pipeline_/14840169

الاتاحة: https://doi.org/10.1371/journal.pone.0253578.s003

المؤلفون: Yosuke Hirotsu (3445004), Masao Omata (59650)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, GR, syndrome coronavirus 2, spike protein W 152L mutations, spike protein receptor-binding domain, Avian Influenza Data, GISAID, 484K, coronavirus disease 2019, SARS-CoV -2, W 152L mutations, R .1 lineage, PANGO, SARS-CoV -2 genome sequences, spike protein RBD, COVID

Relation: https://figshare.com/articles/journal_contribution/Acknowledgments_to_the_authors_and_laboratory_for_registering_the_genome_data_via_GISAID_/14745083

الاتاحة: https://doi.org/10.1371/journal.ppat.1009619.s003

المؤلفون: David A. Coil (7382090), Timothy Albertson (8417103), Shefali Banerjee (11021409), Greg Brennan (534922), A. J. Campbell (11021412), Stuart H. Cohen (11021415), Satya Dandekar (61929), Samuel L. Díaz-Muñoz (11021418), Jonathan A. Eisen (7382087), Tracey Goldstein (329930), Ivy R. Jose (11021421), Maya Juarez (11021424), Brandt A. Robinson (11021427), Stefan Rothenburg (66518), Christian Sandrock (10770242), Ana M. M. Stoian (4984688), Daniel G. Tompkins (11021430), Alexandre Tremeau-Bravard (11021433), Angela Haczku (87487)

مصطلحات موضوعية: Microbiology, Cell Biology, Molecular Biology, Biotechnology, Evolutionary Biology, Mental Health, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, staff congregation areas, COVID -19 patient, surface swabs, Vero cell cultures, SARS-CoV -2 qRT-PCR positivity, sequencing, SARS-CoV -2 RNA, COVID -19 transmission, UC Davis Rationale, SARS-CoV -2 contamination, SARS-CoV -2 genomes, Davis Medical Center, hospital surface samples, infectivity, patient management practices, SARS-CoV -2 detection, cytopathic effects, SARS-CoV -2 genome sequences

Relation: https://figshare.com/articles/figure/Representative_ward_room_sampled_by_swabs_for_SARS-CoV-2_at_the_UCDMC_/14840172

الاتاحة: https://doi.org/10.1371/journal.pone.0253578.g001

المؤلفون: David A. Coil (7382090), Timothy Albertson (8417103), Shefali Banerjee (11021409), Greg Brennan (534922), A. J. Campbell (11021412), Stuart H. Cohen (11021415), Satya Dandekar (61929), Samuel L. Díaz-Muñoz (11021418), Jonathan A. Eisen (7382087), Tracey Goldstein (329930), Ivy R. Jose (11021421), Maya Juarez (11021424), Brandt A. Robinson (11021427), Stefan Rothenburg (66518), Christian Sandrock (10770242), Ana M. M. Stoian (4984688), Daniel G. Tompkins (11021430), Alexandre Tremeau-Bravard (11021433), Angela Haczku (87487)

مصطلحات موضوعية: Microbiology, Cell Biology, Molecular Biology, Biotechnology, Evolutionary Biology, Mental Health, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, staff congregation areas, COVID -19 patient, surface swabs, Vero cell cultures, SARS-CoV -2 qRT-PCR positivity, sequencing, SARS-CoV -2 RNA, COVID -19 transmission, UC Davis Rationale, SARS-CoV -2 contamination, SARS-CoV -2 genomes, Davis Medical Center, hospital surface samples, infectivity, patient management practices, SARS-CoV -2 detection, cytopathic effects, SARS-CoV -2 genome sequences

Relation: https://figshare.com/articles/figure/SARS-CoV-2_positive_patients_at_UCDMC_during_the_first_and_the_second_wave_of_COVID-19_/14840175

الاتاحة: https://doi.org/10.1371/journal.pone.0253578.g002

المؤلفون: David A. Coil (7382090), Timothy Albertson (8417103), Shefali Banerjee (11021409), Greg Brennan (534922), A. J. Campbell (11021412), Stuart H. Cohen (11021415), Satya Dandekar (61929), Samuel L. Díaz-Muñoz (11021418), Jonathan A. Eisen (7382087), Tracey Goldstein (329930), Ivy R. Jose (11021421), Maya Juarez (11021424), Brandt A. Robinson (11021427), Stefan Rothenburg (66518), Christian Sandrock (10770242), Ana M. M. Stoian (4984688), Daniel G. Tompkins (11021430), Alexandre Tremeau-Bravard (11021433), Angela Haczku (87487)

مصطلحات موضوعية: Microbiology, Cell Biology, Molecular Biology, Biotechnology, Evolutionary Biology, Mental Health, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, staff congregation areas, COVID -19 patient, surface swabs, Vero cell cultures, SARS-CoV -2 qRT-PCR positivity, sequencing, SARS-CoV -2 RNA, COVID -19 transmission, UC Davis Rationale, SARS-CoV -2 contamination, SARS-CoV -2 genomes, Davis Medical Center, hospital surface samples, infectivity, patient management practices, SARS-CoV -2 detection, cytopathic effects, SARS-CoV -2 genome sequences

Relation: https://figshare.com/articles/figure/Micrographs_of_Vero_E6_cells_five_days_after_inoculation_/14840178

الاتاحة: https://doi.org/10.1371/journal.pone.0253578.g003

المؤلفون: David A. Coil (7382090), Timothy Albertson (8417103), Shefali Banerjee (11021409), Greg Brennan (534922), A. J. Campbell (11021412), Stuart H. Cohen (11021415), Satya Dandekar (61929), Samuel L. Díaz-Muñoz (11021418), Jonathan A. Eisen (7382087), Tracey Goldstein (329930), Ivy R. Jose (11021421), Maya Juarez (11021424), Brandt A. Robinson (11021427), Stefan Rothenburg (66518), Christian Sandrock (10770242), Ana M. M. Stoian (4984688), Daniel G. Tompkins (11021430), Alexandre Tremeau-Bravard (11021433), Angela Haczku (87487)

مصطلحات موضوعية: Microbiology, Cell Biology, Molecular Biology, Biotechnology, Evolutionary Biology, Mental Health, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, staff congregation areas, COVID -19 patient, surface swabs, Vero cell cultures, SARS-CoV -2 qRT-PCR positivity, sequencing, SARS-CoV -2 RNA, COVID -19 transmission, UC Davis Rationale, SARS-CoV -2 contamination, SARS-CoV -2 genomes, Davis Medical Center, hospital surface samples, infectivity, patient management practices, SARS-CoV -2 detection, cytopathic effects, SARS-CoV -2 genome sequences

Relation: https://figshare.com/articles/figure/Phylogenetic_comparison_of_the_SARS-CoV-2_sequences_obtained_from_environmental_swabs_at_UCDMC_/14840184

الاتاحة: https://doi.org/10.1371/journal.pone.0253578.g005

المؤلفون: Yosuke Hirotsu (3445004), Masao Omata (59650)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, GR, syndrome coronavirus 2, spike protein W 152L mutations, spike protein receptor-binding domain, Avian Influenza Data, GISAID, 484K, coronavirus disease 2019, SARS-CoV -2, W 152L mutations, R .1 lineage, PANGO, SARS-CoV -2 genome sequences, spike protein RBD, COVID

Relation: https://figshare.com/articles/figure/Changes_in_the_number_of_R_1_lineage_SARS-CoV-2_strains_identified_in_Yamanashi_Japan_/14745077

الاتاحة: https://doi.org/10.1371/journal.ppat.1009619.s001

المؤلفون: Yosuke Hirotsu (3445004), Masao Omata (59650)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, GR, syndrome coronavirus 2, spike protein W 152L mutations, spike protein receptor-binding domain, Avian Influenza Data, GISAID, 484K, coronavirus disease 2019, SARS-CoV -2, W 152L mutations, R .1 lineage, PANGO, SARS-CoV -2 genome sequences, spike protein RBD, COVID

Relation: https://figshare.com/articles/figure/Global_data_of_SARS-CoV-2_harboring_spike_protein_with_an_E484K_mutation_as_of_April_22_2021_/14745080

الاتاحة: https://doi.org/10.1371/journal.ppat.1009619.s002

المؤلفون: Yosuke Hirotsu (3445004), Masao Omata (59650)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, GR, syndrome coronavirus 2, spike protein W 152L mutations, spike protein receptor-binding domain, Avian Influenza Data, GISAID, 484K, coronavirus disease 2019, SARS-CoV -2, W 152L mutations, R .1 lineage, PANGO, SARS-CoV -2 genome sequences, spike protein RBD, COVID

Relation: https://figshare.com/articles/figure/TaqMan_assay_for_discriminating_R_1_lineage_SARS-CoV-2_by_its_spike_variant_allele_/14745086

الاتاحة: https://doi.org/10.1371/journal.ppat.1009619.g001

المؤلفون: Yosuke Hirotsu (3445004), Masao Omata (59650)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, GR, syndrome coronavirus 2, spike protein W 152L mutations, spike protein receptor-binding domain, Avian Influenza Data, GISAID, 484K, coronavirus disease 2019, SARS-CoV -2, W 152L mutations, R .1 lineage, PANGO, SARS-CoV -2 genome sequences, spike protein RBD, COVID

Relation: https://figshare.com/articles/figure/Phylogenetic_tree_of_R_1_lineage_SARS-CoV-2_/14745092

الاتاحة: https://doi.org/10.1371/journal.ppat.1009619.g003

المؤلفون: Yosuke Hirotsu (3445004), Masao Omata (59650)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, GR, syndrome coronavirus 2, spike protein W 152L mutations, spike protein receptor-binding domain, Avian Influenza Data, GISAID, 484K, coronavirus disease 2019, SARS-CoV -2, W 152L mutations, R .1 lineage, PANGO, SARS-CoV -2 genome sequences, spike protein RBD, COVID

Relation: https://figshare.com/articles/dataset/Common_mutations_in_the_SARS-CoV-2_R_1_lineage_/14745095

الاتاحة: https://doi.org/10.1371/journal.ppat.1009619.t001

المؤلفون: Yosuke Hirotsu (3445004), Masao Omata (59650)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, GR, syndrome coronavirus 2, spike protein W 152L mutations, spike protein receptor-binding domain, Avian Influenza Data, GISAID, 484K, coronavirus disease 2019, SARS-CoV -2, W 152L mutations, R .1 lineage, PANGO, SARS-CoV -2 genome sequences, spike protein RBD, COVID

Relation: https://figshare.com/articles/dataset/Global_numbers_and_percentages_of_confirmed_R_1_lineage_SARS-CoV-2_cases_/14745098

الاتاحة: https://doi.org/10.1371/journal.ppat.1009619.t002

المؤلفون: Yosuke Hirotsu (3445004), Masao Omata (59650)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, GR, syndrome coronavirus 2, spike protein W 152L mutations, spike protein receptor-binding domain, Avian Influenza Data, GISAID, 484K, coronavirus disease 2019, SARS-CoV -2, W 152L mutations, R .1 lineage, PANGO, SARS-CoV -2 genome sequences, spike protein RBD, COVID

Relation: https://figshare.com/articles/figure/Timeline_of_SARS-CoV-2_R_1_lineage_emergence_and_country-specific_percentages_of_global_cases_/14745089

الاتاحة: https://doi.org/10.1371/journal.ppat.1009619.g002

المؤلفون: Jones Lamptey (10702032), Favour Oluwapelumi Oyelami (9341594), Michael Owusu (607099), Bernard Nkrumah (166882), Paul Oluwagbenga Idowu (10702035), Enoch Appiah Adu-Gyamfi (10702038), Armin Czika (10702041), Philip El-Duah (687463), Richmond Yeboah (9756708), Augustina Sylverken (737889), Oluwatayo Israel Olasunkanmi (10702044), Ellis Owusu-Dabo (264364), Christian Drosten (58071), Yaw Adu-Sarkodie (166893)

مصطلحات موضوعية: Medicine, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, duo variants ORF 1ab 4715 L, Avian Influenza Data, S protein 614 G variants, GISAID, mutation, coronavirus disease 2019, SARS-CoV -2, reference SARS-CoV -2 sequence, outbreak, 224 SARS-CoV -2 genome sequences, COVID -19 deaths

Relation: https://figshare.com/articles/dataset/Mutations_in_each_isolate_of_SARS-CoV-2_in_Africa_in_the_early_phase_of_COVID-19_epidemic_/14487720

الاتاحة: https://doi.org/10.1371/journal.pntd.0009335.s001

المؤلفون: Jones Lamptey (10702032), Favour Oluwapelumi Oyelami (9341594), Michael Owusu (607099), Bernard Nkrumah (166882), Paul Oluwagbenga Idowu (10702035), Enoch Appiah Adu-Gyamfi (10702038), Armin Czika (10702041), Philip El-Duah (687463), Richmond Yeboah (9756708), Augustina Sylverken (737889), Oluwatayo Israel Olasunkanmi (10702044), Ellis Owusu-Dabo (264364), Christian Drosten (58071), Yaw Adu-Sarkodie (166893)

مصطلحات موضوعية: Medicine, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, duo variants ORF 1ab 4715 L, Avian Influenza Data, S protein 614 G variants, GISAID, mutation, coronavirus disease 2019, SARS-CoV -2, reference SARS-CoV -2 sequence, outbreak, 224 SARS-CoV -2 genome sequences, COVID -19 deaths

Relation: https://figshare.com/articles/dataset/Regional_distribution_of_common_and_unique_mutation_of_SARS-CoV-2_in_Africa_/14487729

الاتاحة: https://doi.org/10.1371/journal.pntd.0009335.s004

المؤلفون: Jones Lamptey (10702032), Favour Oluwapelumi Oyelami (9341594), Michael Owusu (607099), Bernard Nkrumah (166882), Paul Oluwagbenga Idowu (10702035), Enoch Appiah Adu-Gyamfi (10702038), Armin Czika (10702041), Philip El-Duah (687463), Richmond Yeboah (9756708), Augustina Sylverken (737889), Oluwatayo Israel Olasunkanmi (10702044), Ellis Owusu-Dabo (264364), Christian Drosten (58071), Yaw Adu-Sarkodie (166893)

مصطلحات موضوعية: Medicine, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, duo variants ORF 1ab 4715 L, Avian Influenza Data, S protein 614 G variants, GISAID, mutation, coronavirus disease 2019, SARS-CoV -2, reference SARS-CoV -2 sequence, outbreak, 224 SARS-CoV -2 genome sequences, COVID -19 deaths

Relation: https://figshare.com/articles/dataset/Regional_distribution_of_S614G_ORF1ab_P4715L_and_ORF1ab_RdRp_in_Africa_/14487723

الاتاحة: https://doi.org/10.1371/journal.pntd.0009335.s002

المؤلفون: Jones Lamptey (10702032), Favour Oluwapelumi Oyelami (9341594), Michael Owusu (607099), Bernard Nkrumah (166882), Paul Oluwagbenga Idowu (10702035), Enoch Appiah Adu-Gyamfi (10702038), Armin Czika (10702041), Philip El-Duah (687463), Richmond Yeboah (9756708), Augustina Sylverken (737889), Oluwatayo Israel Olasunkanmi (10702044), Ellis Owusu-Dabo (264364), Christian Drosten (58071), Yaw Adu-Sarkodie (166893)

مصطلحات موضوعية: Medicine, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, duo variants ORF 1ab 4715 L, Avian Influenza Data, S protein 614 G variants, GISAID, mutation, coronavirus disease 2019, SARS-CoV -2, reference SARS-CoV -2 sequence, outbreak, 224 SARS-CoV -2 genome sequences, COVID -19 deaths

Relation: https://figshare.com/articles/dataset/List_of_Acknowledgment_of_authors_originating_and_submitting_laboratories_of_SARS-CoV-2_sequences_on_GISAID_/14487726

الاتاحة: https://doi.org/10.1371/journal.pntd.0009335.s003

المؤلفون: Jones Lamptey (10702032), Favour Oluwapelumi Oyelami (9341594), Michael Owusu (607099), Bernard Nkrumah (166882), Paul Oluwagbenga Idowu (10702035), Enoch Appiah Adu-Gyamfi (10702038), Armin Czika (10702041), Philip El-Duah (687463), Richmond Yeboah (9756708), Augustina Sylverken (737889), Oluwatayo Israel Olasunkanmi (10702044), Ellis Owusu-Dabo (264364), Christian Drosten (58071), Yaw Adu-Sarkodie (166893)

مصطلحات موضوعية: Medicine, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, duo variants ORF 1ab 4715 L, Avian Influenza Data, S protein 614 G variants, GISAID, mutation, coronavirus disease 2019, SARS-CoV -2, reference SARS-CoV -2 sequence, outbreak, 224 SARS-CoV -2 genome sequences, COVID -19 deaths

Relation: https://figshare.com/articles/dataset/Updated_mutations_in_each_isolate_of_SARS-CoV-2_in_Africa_/14487732

الاتاحة: https://doi.org/10.1371/journal.pntd.0009335.s005