المؤلفون: Laura Salazar-Jaramillo, Jacobo de la Cuesta-Zuluaga, Luis A. Chica, María Cadavid, Ruth E. Ley, Alejandro Reyes, Juan S. Escobar

المصدر: mSystems, Vol 9, Iss 8 (2024)

مصطلحات موضوعية: 16S rRNA, dnaK, gyrB, BMI, metagenomics, Lachnospiraceae, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2379-5077

URL الوصول: https://doaj.org/article/4ac88bcd39d44016a16faccd36172e6b

المؤلفون: William A. Walters, Catherine Ley, Trevor Hastie, Ruth E. Ley, Julie Parsonnet

المصدر: BMC Medical Research Methodology, Vol 24, Iss 1, Pp 1-10 (2024)

مصطلحات موضوعية: Michaelis–Menten equation, Growth, Birth cohort, Height estimation, Weight estimation, Medicine (General), R5-920

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1471-2288

URL الوصول: https://doaj.org/article/6a9734a8637e4ff89391a83d608fc9c0

المؤلفون: Tanja Akbuğa-Schön, Taichi A. Suzuki, Dennis Jakob, Dai Long Vu, Jillian L. Waters, Ruth E. Ley

المصدر: mBio, Vol 15, Iss 2 (2024)

مصطلحات موضوعية: microbiome, Christensenella, energy, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2150-7511

URL الوصول: https://doaj.org/article/8b25d70a852a4084a3db43f2246b97a8

المؤلفون: Jacobo de la Cuesta-Zuluaga, Kelsey E. Huus, Nicholas D. Youngblut, Juan S. Escobar, Ruth E. Ley

المصدر: Gut Microbes, Vol 15, Iss 2 (2023)

مصطلحات موضوعية: Obesity, cardiometabolic disease, gut microbiome, fecal metagenomes, functional potential, microbiome diversity, Diseases of the digestive system. Gastroenterology, RC799-869

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1949-0976; https://doaj.org/toc/1949-0984

URL الوصول: https://doaj.org/article/08e778df8ccd4760b08d186bfd11da4f

المؤلفون: Isabella Casini, Tim McCubbin, Sofia Esquivel-Elizondo, Guillermo G. Luque, Daria Evseeva, Christian Fink, Sebastian Beblawy, Nicholas D. Youngblut, Ludmilla Aristilde, Daniel H. Huson, Andreas Dräger, Ruth E. Ley, Esteban Marcellin, Largus T. Angenent, Bastian Molitor

المصدر: iScience, Vol 26, Iss 10, Pp 108016- (2023)

مصطلحات موضوعية: Genetic engineering, Systems biology, Proteomics, Science

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S258900422302093X; https://doaj.org/toc/2589-0042

URL الوصول: https://doaj.org/article/c5cc7ac8f344453084d7105ddbd16e5d

المؤلفون: Olga Mineeva, Daniel Danciu, Bernhard Schölkopf, Ruth E Ley, Gunnar Rätsch, Nicholas D Youngblut

المصدر: PLoS Computational Biology, Vol 19, Iss 5, p e1011001 (2023)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

URL الوصول: https://doaj.org/article/3da1308b99c642dfbd9b7c8030f366a2

المؤلفون: Albane Ruaud, Niklas Pfister, Ruth E Ley, Nicholas D Youngblut

المصدر: PLoS Computational Biology, Vol 18, Iss 12, p e1010714 (2022)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

URL الوصول: https://doaj.org/article/414afb22538349758690bbeb31a52c8d

المؤلفون: Elizabeth L. Johnson, Stacey L. Heaver, Jillian L. Waters, Benjamin I. Kim, Alexis Bretin, Andrew L. Goodman, Andrew T. Gewirtz, Tilla S. Worgall, Ruth E. Ley

المصدر: Nature Communications, Vol 11, Iss 1, Pp 1-11 (2020)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/a946ac4716d946b782e0ae26fb93f95f

المؤلفون: Albane Ruaud (14259687), Niklas Pfister (5522843), Ruth E. Ley (9233814), Nicholas D. Youngblut (4732542)

مصطلحات موضوعية: Genetics, Ecology, Cancer, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, yield limited insights, previously reported association, predicting phenotypes based, microbial taxa may, human gut methanogens, global metagenome dataset, bootstrapping help reduce, real metagenomic data, gut microbiome differences, div >< p, based microbiome data, method accurately captures, enhancing model interpretation, complex syntrophic network, endor , microbiome data, microbiome science, microbiome components, methanobacteriaceae <, christensenellales <, utilized endor, using endor, found endor, endor simplifies

Relation: https://figshare.com/articles/journal_contribution/endoR_performance_stabilizes_as_the_number_of_bootstraps_increases_/21727551

الاتاحة: https://doi.org/10.1371/journal.pcbi.1010714.s010

المؤلفون: Albane Ruaud (14259687), Niklas Pfister (5522843), Ruth E. Ley (9233814), Nicholas D. Youngblut (4732542)

مصطلحات موضوعية: Genetics, Ecology, Cancer, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, yield limited insights, previously reported association, predicting phenotypes based, microbial taxa may, human gut methanogens, global metagenome dataset, bootstrapping help reduce, real metagenomic data, gut microbiome differences, div >< p, based microbiome data, method accurately captures, enhancing model interpretation, complex syntrophic network, endor , microbiome data, microbiome science, microbiome components, methanobacteriaceae <, christensenellales <, utilized endor, using endor, found endor, endor simplifies

Relation: https://figshare.com/articles/journal_contribution/Discretization_of_variables_and_modification_of_rules_/21727557

الاتاحة: https://doi.org/10.1371/journal.pcbi.1010714.s012

المؤلفون: Albane Ruaud (14259687), Niklas Pfister (5522843), Ruth E. Ley (9233814), Nicholas D. Youngblut (4732542)

مصطلحات موضوعية: Genetics, Ecology, Cancer, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, yield limited insights, previously reported association, predicting phenotypes based, microbial taxa may, human gut methanogens, global metagenome dataset, bootstrapping help reduce, real metagenomic data, gut microbiome differences, div >< p, based microbiome data, method accurately captures, enhancing model interpretation, complex syntrophic network, endor , microbiome data, microbiome science, microbiome components, methanobacteriaceae <, christensenellales <, utilized endor, using endor, found endor, endor simplifies

Relation: https://figshare.com/articles/journal_contribution/Supplementary_Methods_describing_the_data_the_evaluation_of_endoR_and_the_analysis_of_metagenomes_/21727524

الاتاحة: https://doi.org/10.1371/journal.pcbi.1010714.s002

المؤلفون: Albane Ruaud (14259687), Niklas Pfister (5522843), Ruth E. Ley (9233814), Nicholas D. Youngblut (4732542)

مصطلحات موضوعية: Genetics, Ecology, Cancer, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, yield limited insights, previously reported association, predicting phenotypes based, microbial taxa may, human gut methanogens, global metagenome dataset, bootstrapping help reduce, real metagenomic data, gut microbiome differences, div >< p, based microbiome data, method accurately captures, enhancing model interpretation, complex syntrophic network, endor , microbiome data, microbiome science, microbiome components, methanobacteriaceae <, christensenellales <, utilized endor, using endor, found endor, endor simplifies

Relation: https://figshare.com/articles/journal_contribution/Supplementary_Results_/21727527

الاتاحة: https://doi.org/10.1371/journal.pcbi.1010714.s003

المؤلفون: Albane Ruaud (14259687), Niklas Pfister (5522843), Ruth E. Ley (9233814), Nicholas D. Youngblut (4732542)

مصطلحات موضوعية: Genetics, Ecology, Cancer, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, yield limited insights, previously reported association, predicting phenotypes based, microbial taxa may, human gut methanogens, global metagenome dataset, bootstrapping help reduce, real metagenomic data, gut microbiome differences, div >< p, based microbiome data, method accurately captures, enhancing model interpretation, complex syntrophic network, endor , microbiome data, microbiome science, microbiome components, methanobacteriaceae <, christensenellales <, utilized endor, using endor, found endor, endor simplifies

Relation: https://figshare.com/articles/journal_contribution/Supplementary_Methods_describing_the_endoR_method_/21727521

الاتاحة: https://doi.org/10.1371/journal.pcbi.1010714.s001

المؤلفون: Albane Ruaud (14259687), Niklas Pfister (5522843), Ruth E. Ley (9233814), Nicholas D. Youngblut (4732542)

مصطلحات موضوعية: Genetics, Ecology, Cancer, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, yield limited insights, previously reported association, predicting phenotypes based, microbial taxa may, human gut methanogens, global metagenome dataset, bootstrapping help reduce, real metagenomic data, gut microbiome differences, div >< p, based microbiome data, method accurately captures, enhancing model interpretation, complex syntrophic network, endor , microbiome data, microbiome science, microbiome components, methanobacteriaceae <, christensenellales <, utilized endor, using endor, found endor, endor simplifies

Relation: https://figshare.com/articles/journal_contribution/endoR_recovers_ground_truth_network_from_perfect_predictive_models_/21727539

الاتاحة: https://doi.org/10.1371/journal.pcbi.1010714.s006

المؤلفون: Albane Ruaud (14259687), Niklas Pfister (5522843), Ruth E. Ley (9233814), Nicholas D. Youngblut (4732542)

مصطلحات موضوعية: Genetics, Ecology, Cancer, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, yield limited insights, previously reported association, predicting phenotypes based, microbial taxa may, human gut methanogens, global metagenome dataset, bootstrapping help reduce, real metagenomic data, gut microbiome differences, div >< p, based microbiome data, method accurately captures, enhancing model interpretation, complex syntrophic network, endor , microbiome data, microbiome science, microbiome components, methanobacteriaceae <, christensenellales <, utilized endor, using endor, found endor, endor simplifies

Relation: https://figshare.com/articles/journal_contribution/Abbreviations_/21727530

الاتاحة: https://doi.org/10.1371/journal.pcbi.1010714.s004

المؤلفون: Albane Ruaud (14259687), Niklas Pfister (5522843), Ruth E. Ley (9233814), Nicholas D. Youngblut (4732542)

مصطلحات موضوعية: Genetics, Ecology, Cancer, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, yield limited insights, previously reported association, predicting phenotypes based, microbial taxa may, human gut methanogens, global metagenome dataset, bootstrapping help reduce, real metagenomic data, gut microbiome differences, div >< p, based microbiome data, method accurately captures, enhancing model interpretation, complex syntrophic network, endor , microbiome data, microbiome science, microbiome components, methanobacteriaceae <, christensenellales <, utilized endor, using endor, found endor, endor simplifies

Relation: https://figshare.com/articles/journal_contribution/Model_selection_and_fitting_for_predicting_the_presence_absence_of_i_Methanobacteriaceae_i_/21727533

الاتاحة: https://doi.org/10.1371/journal.pcbi.1010714.s005

المؤلفون: Albane Ruaud (14259687), Niklas Pfister (5522843), Ruth E. Ley (9233814), Nicholas D. Youngblut (4732542)

مصطلحات موضوعية: Genetics, Ecology, Cancer, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, yield limited insights, previously reported association, predicting phenotypes based, microbial taxa may, human gut methanogens, global metagenome dataset, bootstrapping help reduce, real metagenomic data, gut microbiome differences, div >< p, based microbiome data, method accurately captures, enhancing model interpretation, complex syntrophic network, endor , microbiome data, microbiome science, microbiome components, methanobacteriaceae <, christensenellales <, utilized endor, using endor, found endor, endor simplifies

Relation: https://figshare.com/articles/journal_contribution/The_accuracy_of_endoR_increases_with_the_accuracy_of_input_models_/21727548

الاتاحة: https://doi.org/10.1371/journal.pcbi.1010714.s009

المؤلفون: Albane Ruaud (14259687), Niklas Pfister (5522843), Ruth E. Ley (9233814), Nicholas D. Youngblut (4732542)

مصطلحات موضوعية: Genetics, Ecology, Cancer, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, yield limited insights, previously reported association, predicting phenotypes based, microbial taxa may, human gut methanogens, global metagenome dataset, bootstrapping help reduce, real metagenomic data, gut microbiome differences, div >< p, based microbiome data, method accurately captures, enhancing model interpretation, complex syntrophic network, endor , microbiome data, microbiome science, microbiome components, methanobacteriaceae <, christensenellales <, utilized endor, using endor, found endor, endor simplifies

Relation: https://figshare.com/articles/journal_contribution/endoR_captures_interactions_predictive_of_a_response_variable_from_a_random_forest_fitted_on_simulated_data_/21727545

الاتاحة: https://doi.org/10.1371/journal.pcbi.1010714.s008

المؤلفون: Albane Ruaud (14259687), Niklas Pfister (5522843), Ruth E. Ley (9233814), Nicholas D. Youngblut (4732542)

مصطلحات موضوعية: Genetics, Ecology, Cancer, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, yield limited insights, previously reported association, predicting phenotypes based, microbial taxa may, human gut methanogens, global metagenome dataset, bootstrapping help reduce, real metagenomic data, gut microbiome differences, div >< p, based microbiome data, method accurately captures, enhancing model interpretation, complex syntrophic network, endor , microbiome data, microbiome science, microbiome components, methanobacteriaceae <, christensenellales <, utilized endor, using endor, found endor, endor simplifies

Relation: https://figshare.com/articles/journal_contribution/endoR_generally_does_not_find_stable_decision_ensemble_from_global_null_models_/21727542

الاتاحة: https://doi.org/10.1371/journal.pcbi.1010714.s007

المؤلفون: Albane Ruaud (14259687), Niklas Pfister (5522843), Ruth E. Ley (9233814), Nicholas D. Youngblut (4732542)

مصطلحات موضوعية: Genetics, Ecology, Cancer, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, yield limited insights, previously reported association, predicting phenotypes based, microbial taxa may, human gut methanogens, global metagenome dataset, bootstrapping help reduce, real metagenomic data, gut microbiome differences, div >< p, based microbiome data, method accurately captures, enhancing model interpretation, complex syntrophic network, endor , microbiome data, microbiome science, microbiome components, methanobacteriaceae <, christensenellales <, utilized endor, using endor, found endor, endor simplifies

Relation: https://figshare.com/articles/journal_contribution/endoR_performs_as_well_as_state-of-the-art_methods_at_identifying_variables_and_pairs_of_variables_predictive_of_a_target_from_fully_simulated_data_/21727560

الاتاحة: https://doi.org/10.1371/journal.pcbi.1010714.s013