المؤلفون: Magaret, Craig, Li, Li, deCamp, Allan, Rolland, Morgane, Juraska, Michal, Williamson, Brian, Ludwig, James, Molitor, Cindy, Benkeser, David, Luedtke, Alex, Simpkins, Brian, Heng, Fei, Sun, Yanqing, Carpp, Lindsay, Bai, Hongjun, Dearlove, Bethany, Giorgi, Elena, Jongeneelen, Mandy, Brandenburg, Boerries, McCallum, Matthew, Bowen, John, Veesler, David, Sadoff, Jerald, Gray, Glenda, Roels, Sanne, Vandebosch, An, Stieh, Daniel, Le Gars, Mathieu, Vingerhoets, Johan, Grinsztejn, Beatriz, Goepfert, Paul, de Sousa, Leonardo, Silva, Mayara, Casapia, Martin, Losso, Marcelo, Gaur, Aditya, Bekker, Linda-Gail, Garrett, Nigel, Truyers, Carla, Van Dromme, Ilse, Swann, Edith, Marovich, Mary, Follmann, Dean, Neuzil, Kathleen, Corey, Lawrence, Greninger, Alexander, Roychoudhury, Pavitra, Hyrien, Ollivier, Gilbert, Peter, Little, Susan

المصدر: Nature Communications. 15(1)

مصطلحات موضوعية: Humans, Ad26COVS1, COVID-19, SARS-CoV-2, Vaccine Efficacy, Amino Acids, Antibodies, Viral, Antibodies, Neutralizing

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/3x39f2hc
https://escholarship.org/content/qt3x39f2hc/qt3x39f2hc.pdf

المؤلفون: Dwivedi, Ashok, Gornalusse, Germán, Siegel, David, Barbehenn, Alton, Thanh, Cassandra, Hoh, Rebecca, Hobbs, Kristen, Pan, Tony, Gibson, Erica, Martin, Jeffrey, Hecht, Frederick, Pilcher, Christopher, Milush, Jeffrey, Busch, Michael, Stone, Mars, Huang, Meei-Li, Reppetti, Julieta, Vo, Phuong, Levy, Claire, Roychoudhury, Pavitra, Jerome, Keith, Hladik, Florian, Henrich, Timothy, Deeks, Steven, Lee, Sulggi

المصدر: PLoS Pathogens. 19(11)

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/6f60h1sb
https://escholarship.org/content/qt6f60h1sb/qt6f60h1sb.pdf

المؤلفون: Siegel, David A, Thanh, Cassandra, Wan, Eunice, Hoh, Rebecca, Hobbs, Kristen, Pan, Tony, Gibson, Erica A, Kroetz, Deanna L, Martin, Jeffrey, Hecht, Frederick, Pilcher, Christopher, Martin, Maureen, Carrington, Mary, Pillai, Satish, Busch, Michael P, Stone, Mars, Levy, Claire N, Huang, Meei-Li, Roychoudhury, Pavitra, Hladik, Florian, Jerome, Keith R, Kiem, Hans-Peter, Henrich, Timothy J, Deeks, Steven G, Lee, Sulggi A

المصدر: AIDS (London, England). 37(3)

مصطلحات موضوعية: CD8-Positive T-Lymphocytes, Humans, HIV-1, HIV Infections, Interferon Type I, Histocompatibility Antigens Class I, HLA Antigens, Cross-Sectional Studies, Alleles, Myxovirus Resistance Proteins, Major Histocompatibility Complex, Receptors, Chemokine, RNA, Viral Load, Genetics, Infectious Diseases, Human Genome, HIV/AIDS, Aetiology, 2.1 Biological and endogenous factors, Infection, C-C chemokine receptor type 5 gene, HIV reservoir, host genetics, major histocompatibility complex class I, type I interferon, Biological Sciences, Medical and Health Sciences, Psychology and Cognitive Sciences, Virology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2w7705n8

المؤلفون: Hilt, Evann E, Boocock, James, Trejo, Marisol, Le, Catherine Q, Guo, Longhua, Zhang, Yi, Sathe, Laila, Arboleda, Valerie A, Yin, Yi, Bloom, Joshua S, Wang, Pin-Chieh, Elmore, Joann G, Kruglyak, Leonid, Shrestha, Lasata, Bakhash, Shah A Mohamed, Lin, Michelle, Xie, Hong, Huang, Meei-Li, Roychoudhury, Pavitra, Greninger, Alexander, Chandrasekaran, Sukantha, Yang, Shangxin, Garner, Omai B

المصدر: Clinical Infectious Diseases. 74(2)

مصطلحات موضوعية: Pneumonia & Influenza, Prevention, Pneumonia, Infectious Diseases, Lung, Clinical Research, Good Health and Well Being, COVID-19, Diagnostic Techniques and Procedures, Humans, Los Angeles, Retrospective Studies, SARS-CoV-2, diagnostic testing, Biological Sciences, Medical and Health Sciences, Microbiology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/0gc8j3r9

المؤلفون: Levy, Claire N, Hughes, Sean M, Roychoudhury, Pavitra, Reeves, Daniel B, Amstuz, Chelsea, Zhu, Haiying, Huang, Meei-Li, Wei, Yulun, Bull, Marta E, Cassidy, Noah AJ, McClure, Jan, Frenkel, Lisa M, Stone, Mars, Bakkour, Sonia, Wonderlich, Elizabeth R, Busch, Michael P, Deeks, Steven G, Schiffer, Joshua T, Coombs, Robert W, Lehman, Dara A, Jerome, Keith R, Hladik, Florian

المصدر: Cell reports. Medicine. 2(4)

مصطلحات موضوعية: HIV cure, HIV reservoir, IPDA, digital PCR, genital mucosa, intact proviral DNA assay, intestinal mucosa, multiplexing, rectal, viral outgrowth assay

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/86v7t921

المؤلفون: Wagner, Cassia, Kistler, Kathryn E., Perchetti, Garrett A., Baker, Noah, Frisbie, Lauren A., Torres, Laura Marcela, Aragona, Frank, Yun, Cory, Figgins, Marlin, Greninger, Alexander L., Cox, Alex, Oltean, Hanna N., Roychoudhury, Pavitra, Bedford, Trevor

المصدر: Nature Communications ; volume 15, issue 1 ; ISSN 2041-1723

الاتاحة: https://doi.org/10.1038/s41467-024-52571-4
https://www.nature.com/articles/s41467-024-52571-4.pdf
https://www.nature.com/articles/s41467-024-52571-4

المؤلفون: Ouwendijk, Werner J. D., Roychoudhury, Pavitra, Cunningham, Anthony L., Jerome, Keith R., Koelle, David M., Kinchington, Paul R., Mohr, Ian, Wilson, Angus C., Verjans, Georges G. M. G. M., Depledge, Daniel P.

المصدر: Ouwendijk , W J D , Roychoudhury , P , Cunningham , A L , Jerome , K R , Koelle , D M , Kinchington , P R , Mohr , I , Wilson , A C , Verjans , G G M G M & Depledge , D P 2024 , ' Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice ' , Journal of Virology , vol. 98 , no. 4 . https://doi.org/10.1128/jvi.01858-23

وصف الملف: application/pdf

الاتاحة: https://pure.eur.nl/en/publications/179f536e-cad7-4f1e-aad4-1aa4c84356a0
https://doi.org/10.1128/jvi.01858-23
https://pure.eur.nl/ws/files/139103331/ouwendijk-et-al-2024-reanalysis-of-single-cell-rna-sequencing-data-does-not-support-herpes-simplex-virus-1-latency-in.pdf
http://www.scopus.com/inward/record.url?scp=85190726033&partnerID=8YFLogxK

المؤلفون: Paredes, Miguel I., Perofsky, Amanda C., Frisbie, Lauren, Moncla, Louise H., Roychoudhury, Pavitra, Xie, Hong, Bakhash, Shah A. Mohamed, Kong, Kevin, Arnould, Isabel, Nguyen, Tien V., Wendm, Seffir T., Hajian, Pooneh, Ellis, Sean, Mathias, Patrick C., Greninger, Alexander L., Starita, Lea M., Frazar, Chris D., Ryke, Erica, Zhong, Weizhi, Gamboa, Luis, Threlkeld, Machiko, Lee, Jover, Stone, Jeremy, McDermot, Evan, Truong, Melissa, Shendure, Jay, Oltean, Hanna N., Viboud, Cécile, Chu, Helen, Müller, Nicola F., Bedford, Trevor

المساهمون: Stern, Adi, National Institute of General Medical Sciences, Howard Hughes Medical Institute, NIH, Gates Ventures, CDC, Fast Grants, WADOH

المصدر: PLOS Pathogens ; volume 20, issue 3, page e1012117 ; ISSN 1553-7374

الاتاحة: http://dx.doi.org/10.1371/journal.ppat.1012117
https://dx.plos.org/10.1371/journal.ppat.1012117

المؤلفون: Bedford, Trevor, Greninger, Alexander L, Roychoudhury, Pavitra, Starita, Lea M, Famulare, Michael, Huang, Meei-Li, Nalla, Arun, Pepper, Gregory, Reinhardt, Adam, Xie, Hong, Shrestha, Lasata, Nguyen, Truong N, Adler, Amanda, Brandstetter, Elisabeth, Cho, Shari, Giroux, Danielle, Han, Peter D, Fay, Kairsten, Frazar, Chris D, Ilcisin, Misja, Lacombe, Kirsten, Lee, Jover, Kiavand, Anahita, Richardson, Matthew, Sibley, Thomas R, Truong, Melissa, Wolf, Caitlin R, Nickerson, Deborah A, Rieder, Mark J, Englund, Janet A, Hadfield, James, Hodcroft, Emma B, Huddleston, John, Moncla, Louise H, Müller, Nicola F, Neher, Richard A, Deng, Xianding, Gu, Wei, Federman, Scot, Chiu, Charles, Duchin, Jeffrey S, Gautom, Romesh, Melly, Geoff, Hiatt, Brian, Dykema, Philip, Lindquist, Scott, Queen, Krista, Tao, Ying, Uehara, Anna, Tong, Suxiang, MacCannell, Duncan, Armstrong, Gregory L, Baird, Geoffrey S, Chu, Helen Y, Shendure, Jay, Jerome, Keith R, Boeckh, Michael, Lutz, Barry R, Thompson, Matthew, Huang, Shichu, Jackson, Michael L, Kimball, Louise E, Logue, Jennifer, Lyon, Victoria, Newman, Kira L, Suchsland, Monica L Zigman

المصدر: Science. 370(6516)

مصطلحات موضوعية: Infectious Diseases, Pneumonia & Influenza, Lung, Prevention, Emerging Infectious Diseases, Biodefense, Vaccine Related, Pneumonia, Infection, Good Health and Well Being, Bayes Theorem, Betacoronavirus, COVID-19, Coronavirus Infections, Genome, Viral, Humans, Likelihood Functions, Pandemics, Phylogeny, Pneumonia, Viral, SARS-CoV-2, Washington, Seattle Flu Study Investigators, General Science & Technology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/77m7457h
https://escholarship.org/content/qt77m7457h/qt77m7457h.pdf

المؤلفون: Deng, Xianding, Gu, Wei, Federman, Scot, du Plessis, Louis, Pybus, Oliver G, Faria, Nuno, Wang, Candace, Yu, Guixia, Bushnell, Brian, Pan, Chao-Yang, Guevara, Hugo, Sotomayor-Gonzalez, Alicia, Zorn, Kelsey, Gopez, Allan, Servellita, Venice, Hsu, Elaine, Miller, Steve, Bedford, Trevor, Greninger, Alexander L, Roychoudhury, Pavitra, Starita, Lea M, Famulare, Michael, Chu, Helen Y, Shendure, Jay, Jerome, Keith R, Anderson, Catie, Gangavarapu, Karthik, Zeller, Mark, Spencer, Emily, Andersen, Kristian G, MacCannell, Duncan, Paden, Clinton R, Li, Yan, Zhang, Jing, Tong, Suxiang, Armstrong, Gregory, Morrow, Scott, Willis, Matthew, Matyas, Bela T, Mase, Sundari, Kasirye, Olivia, Park, Maggie, Masinde, Godfred, Chan, Curtis, Yu, Alexander T, Chai, Shua J, Villarino, Elsa, Bonin, Brandon, Wadford, Debra A, Chiu, Charles Y

المصدر: Science. 369(6503)

مصطلحات موضوعية: Pneumonia, Lung, Infectious Diseases, Emerging Infectious Diseases, Vaccine Related, Pneumonia & Influenza, Prevention, Biodefense, Infection, Good Health and Well Being, Betacoronavirus, COVID-19, California, Coronavirus Infections, Epidemiological Monitoring, Genome, Viral, Humans, Pandemics, Phylogeny, Pneumonia, Viral, SARS-CoV-2, Sequence Alignment, Ships, Travel, Washington, General Science & Technology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/4dh029nb
https://escholarship.org/content/qt4dh029nb/qt4dh029nb.pdf

المؤلفون: Hsiao, Feng, Frouard, Julie, Gramatica, Andrea, Xie, Guorui, Telwatte, Sushama, Lee, Guinevere Q, Roychoudhury, Pavitra, Schwarzer, Roland, Luo, Xiaoyu, Yukl, Steven A, Lee, Sulggi, Hoh, Rebecca, Deeks, Steven G, Jones, R Brad, Cavrois, Marielle, Greene, Warner C, Roan, Nadia R

المصدر: PLoS pathogens. 16(4)

مصطلحات موضوعية: CD4-Positive T-Lymphocytes, Humans, HIV-1, HIV Infections, Virus Latency, Virus Replication, Immunologic Memory, Interleukin-7 Receptor alpha Subunit, Host-Pathogen Interactions, Virology, Microbiology, Immunology, Medical Microbiology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/4j50g3z9

المؤلفون: Deng, Xianding, Gu, Wei, Federman, Scot, du Plessis, Louis, Pybus, Oliver G, Faria, Nuno, Wang, Candace, Yu, Guixia, Pan, Chao-Yang, Guevara, Hugo, Sotomayor-Gonzalez, Alicia, Zorn, Kelsey, Gopez, Allan, Servellita, Venice, Hsu, Elaine, Miller, Steve, Bedford, Trevor, Greninger, Alexander L, Roychoudhury, Pavitra, Starita, Lea M, Famulare, Michael, Chu, Helen Y, Shendure, Jay, Jerome, Keith R, Anderson, Catie, Gangavarapu, Karthik, Zeller, Mark, Spencer, Emily, Andersen, Kristian G, MacCannell, Duncan, Paden, Clinton R, Li, Yan, Zhang, Jing, Tong, Suxiang, Armstrong, Gregory, Morrow, Scott, Willis, Matthew, Matyas, Bela T, Mase, Sundari, Kasirye, Olivia, Park, Maggie, Chan, Curtis, Yu, Alexander T, Chai, Shua J, Villarino, Elsa, Bonin, Brandon, Wadford, Debra A, Chiu, Charles Y

المصدر: medRxiv : the preprint server for health sciences. 1(06-07)

مصطلحات موضوعية: Medical Microbiology, Biomedical and Clinical Sciences, Biological Sciences, Lung, Infectious Diseases, Biotechnology, Prevention, Biodefense, Emerging Infectious Diseases, Vaccine Related, Aetiology, 2.2 Factors relating to the physical environment, Infection, Good Health and Well Being

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/52b2p1x9

المؤلفون: Aswad, Amr, Aimola, Giulia, Wight, Darren, Roychoudhury, Pavitra, Zimmermann, Cosima, Hill, Joshua, Lassner, Dirk, Xie, Hong, Huang, Meei-Li, Parrish, Nicholas F, Schultheiss, Heinz-Peter, Venturini, Cristina, Lager, Susanne, Smith, Gordon C S, Charnock-Jones, D Stephen, Breuer, Judith, Greninger, Alexander L, Kaufer, Benedikt B

المصدر: Molecular biology and evolution. 38(1):96-107

مصطلحات موضوعية: human herpesvirus 6, phylogenetics, genomics, paleovirology, telomere biology

وصف الملف: electronic

URL الوصول: https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-416854
https://doi.org/10.1093/molbev/msaa190
https://uu.diva-portal.org/smash/get/diva2:1456640/FULLTEXT01.pdf

المؤلفون: Despres, Hannah W., Mills, Margaret G., Shirley, David J., Schmidt, Madaline M., Huang, Meei-Li, Roychoudhury, Pavitra, Jerome, Keith R., Greninger, Alexander L., Bruce, Emily A.

المصدر: Proceedings of the National Academy of Sciences of the United States of America, 2022 Feb 01. 119(5), 1-3.

URL الوصول: https://www.jstor.org/stable/27117715

المؤلفون: Kubinski, Hannah C., Despres, Hannah W., Johnson, Bryan A., Schmidt, Madaline M., Jaffrani, Sara A., Mills, Margaret G., Lokugamage, Kumari, Dumas, Caroline M., Shirley, David J., Estes, Leah K., Pekosz, Andrew, Crothers, Jessica W., Roychoudhury, Pavitra, Greninger, Alexander L., Jerome, Keith R., Martorelli Di Genova, Bruno, Walker, David H., Ballif, Bryan A., Ladinsky, Mark S., Bjorkman, Pamela J., Menachery, Vineet D., Bruce, Emily A.

المصدر: bioRxiv, (2024-03-11)

Relation: https://doi.org/10.1101/2024.03.08.584120; https://www.ncbi.nlm.nih.gov/pmc/PMC10979914

الاتاحة: https://doi.org/10.1101/2024.03.08.584120
https://www.ncbi.nlm.nih.gov/pmc/PMC10979914

المؤلفون: Casto, Amanda M, Song, Hoseung, Xie, Hong, Selke, Stacy, Roychoudhury, Pavitra, Wu, Michael C, Wald, Anna, Greninger, Alexander L, Johnston, Christine

المصدر: Journal of Infectious Diseases; 12/15/2024, Vol. 230 Issue 6, p1357-1366, 10p

مصطلحات موضوعية: HERPES genitalis, GENOME-wide association studies, VIRAL genetics, VIRAL variation, GENETIC variation

المؤلفون: McCulloch, Denise J., Rogers, Julia H., Wang, Yongzhe, Chow, Eric J., Link, Amy C., Wolf, Caitlin R., Uyeki, Timothy M., Rolfes, Melissa A., Mosites, Emily, Sereewit, Jaydee, Duchin, Jeffrey S., Sugg, Nancy K., Greninger, Alexander L., Boeckh, Michael J., Englund, Janet A., Shendure, Jay, Hughes, James P., Starita, Lea M., Roychoudhury, Pavitra, Chu, Helen Y.

المساهمون: Centers for Disease Control and Prevention, Gates Ventures, National Institute of Allergy and Infectious Diseases

المصدر: Influenza and Other Respiratory Viruses ; volume 17, issue 6 ; ISSN 1750-2640 1750-2659

الاتاحة: http://dx.doi.org/10.1111/irv.13166
https://onlinelibrary.wiley.com/doi/pdf/10.1111/irv.13166

المؤلفون: Cox, Robert M., Lieber, Carolin M., Wolf, Josef D., Karimi, Amirhossein, Lieberman, Nicole A. P., Sticher, Zachary M., Roychoudhury, Pavitra, Andrews, Meghan K., Krueger, Rebecca E., Natchus, Michael G., Painter, George R., Kolykhalov, Alexander A., Greninger, Alexander L., Plemper, Richard K.

المساهمون: U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases

المصدر: Nature Communications ; volume 14, issue 1 ; ISSN 2041-1723

الاتاحة: http://dx.doi.org/10.1038/s41467-023-40556-8
https://www.nature.com/articles/s41467-023-40556-8.pdf
https://www.nature.com/articles/s41467-023-40556-8

المؤلفون: Yu, Xiaodi, Juraszek, Jarek, Rutten, Lucy, Bakkers, Mark J. G., Blokland, Sven, Melchers, Jelle M., van den Broek, Niels J. F., Verwilligen, Annemiek Y. W., Abeywickrema, Pravien, Vingerhoets, Johan, Neefs, Jean-Marc, Bakhash, Shah A. Mohamed, Roychoudhury, Pavitra, Greninger, Alex, Sharma, Sujata, Langedijk, Johannes P. M.

المساهمون: Krammer, Florian

المصدر: PLOS Pathogens ; volume 19, issue 5, page e1011308 ; ISSN 1553-7374

الاتاحة: http://dx.doi.org/10.1371/journal.ppat.1011308
https://dx.plos.org/10.1371/journal.ppat.1011308

المؤلفون: Hedskog, Charlotte, Rodriguez, Lauren, Roychoudhury, Pavitra, Huang, Meei-Li, Jerome, Keith R, Hao, Linhui, Ireton, Renee C, Li, Jiani, Perry, Jason K, Han, Dong, Camus, Gregory, Greninger, Alexander L, Gale, Michael, Porter, Danielle P

المساهمون: Gilead Sciences, Inc, National Institute for Allergy and Infectious Diseases, National Institutes of Health

المصدر: The Journal of Infectious Diseases ; volume 228, issue 9, page 1263-1273 ; ISSN 0022-1899 1537-6613

الاتاحة: http://dx.doi.org/10.1093/infdis/jiad270
https://academic.oup.com/jid/advance-article-pdf/doi/10.1093/infdis/jiad270/51032782/jiad270.pdf
https://academic.oup.com/jid/article-pdf/228/9/1263/52789673/jiad270.pdf