المؤلفون: Ross J Burton, Raya Ahmed, Simone M Cuff, Sarah Baker, Andreas Artemiou, Matthias Eberl

المصدر: PLoS Computational Biology, Vol 17, Iss 6, p e1009071 (2021)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

URL الوصول: https://doaj.org/article/f0baf2a6344c4c2892eac5cab14ee123

المؤلفون: Raya Ahmed, Kelly L. Miners, Julio Lahoz-Beneytez, Rhiannon E. Jones, Laureline Roger, Christina Baboonian, Yan Zhang, Eddie C.Y. Wang, Marc K. Hellerstein, Joseph M. McCune, Duncan M. Baird, David A. Price, Derek C. Macallan, Becca Asquith, Kristin Ladell

المصدر: Cell Reports, Vol 33, Iss 11, Pp 108501- (2020)

مصطلحات موضوعية: Enter keywords here, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S221112472031490X; https://doaj.org/toc/2211-1247

URL الوصول: https://doaj.org/article/7885536d2b5e42149b0d76509a9181e5

المؤلفون: Pedro Costa Del Amo, Julio Lahoz-Beneytez, Lies Boelen, Raya Ahmed, Kelly L Miners, Yan Zhang, Laureline Roger, Rhiannon E Jones, Silvia A Fuertes Marraco, Daniel E Speiser, Duncan M Baird, David A Price, Kristin Ladell, Derek Macallan, Becca Asquith

المصدر: PLoS Biology, Vol 16, Iss 6, p e2005523 (2018)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC6033534?pdf=render; https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

URL الوصول: https://doaj.org/article/c85bfaa7e2db4200835697b9df1f03c9

المؤلفون: Raya Ahmed, Liset Westera, Julia Drylewicz, Marjet Elemans, Yan Zhang, Elizabeth Kelly, Rajko Reljic, Kiki Tesselaar, Rob J de Boer, Derek C Macallan, José A M Borghans, Becca Asquith

المصدر: PLoS Computational Biology, Vol 11, Iss 10, p e1004355 (2015)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC4593553?pdf=render; https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

URL الوصول: https://doaj.org/article/788648ec6be942418a8b6745f1109b62

المؤلفون: Raya Ahmed Alghamdi, Abdulrahman Saeed Alamari, Sultan Saad Alghamdi, Eyad Abdulrahman Alamoudi, khalid Ali Alahmari, Khalid Raddad Alghashmari, Mansour Salem Al hareth, Ahmad Ali Ahmad Alzahrani, Hamad Abdullah Ali Al Sleem, Ali Mohammed Manqari

Relation: https://doi.org/10.5281/zenodo.13787502; https://doi.org/10.5281/zenodo.13787503; oai:zenodo.org:13787503

الاتاحة: https://doi.org/10.5281/zenodo.13787503

المؤلفون: Ross J. Burton (10941910), Raya Ahmed (803400), Simone M. Cuff (10941913), Sarah Baker (813920), Andreas Artemiou (10941916), Matthias Eberl (221359)

مصطلحات موضوعية: Microbiology, Genetics, Ecology, Immunology, Science Policy, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, user variation, cytometry analysis framework Cytome., open-source cytometry bioinformatics, phenotype T cell subsets, Python framework, Python ecosystem, cell data, software documentation, http, blood samples, handling high-dimensional, batch effects, mass cytometry, MIT license, algorithm agnostic design, cytometry data, document-based database, CytoPy

Relation: https://figshare.com/articles/journal_contribution/Staining_panel_for_T_cells_/14750425

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009071.s010

المؤلفون: Ross J. Burton (10941910), Raya Ahmed (803400), Simone M. Cuff (10941913), Sarah Baker (813920), Andreas Artemiou (10941916), Matthias Eberl (221359)

مصطلحات موضوعية: Microbiology, Genetics, Ecology, Immunology, Science Policy, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, user variation, cytometry analysis framework Cytome., open-source cytometry bioinformatics, phenotype T cell subsets, Python framework, Python ecosystem, cell data, software documentation, http, blood samples, handling high-dimensional, batch effects, mass cytometry, MIT license, algorithm agnostic design, cytometry data, document-based database, CytoPy

Relation: https://figshare.com/articles/journal_contribution/Supplementary_Methods_/14750431

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009071.s012

المؤلفون: Ross J. Burton (10941910), Raya Ahmed (803400), Simone M. Cuff (10941913), Sarah Baker (813920), Andreas Artemiou (10941916), Matthias Eberl (221359)

مصطلحات موضوعية: Microbiology, Genetics, Ecology, Immunology, Science Policy, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, user variation, cytometry analysis framework Cytome., open-source cytometry bioinformatics, phenotype T cell subsets, Python framework, Python ecosystem, cell data, software documentation, http, blood samples, handling high-dimensional, batch effects, mass cytometry, MIT license, algorithm agnostic design, cytometry data, document-based database, CytoPy

Relation: https://figshare.com/articles/journal_contribution/Staining_panel_for_leukocytes_/14750428

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009071.s011

المؤلفون: Ross J. Burton (10941910), Raya Ahmed (803400), Simone M. Cuff (10941913), Sarah Baker (813920), Andreas Artemiou (10941916), Matthias Eberl (221359)

مصطلحات موضوعية: Microbiology, Genetics, Ecology, Immunology, Science Policy, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, user variation, cytometry analysis framework Cytome., open-source cytometry bioinformatics, phenotype T cell subsets, Python framework, Python ecosystem, cell data, software documentation, http, blood samples, handling high-dimensional, batch effects, mass cytometry, MIT license, algorithm agnostic design, cytometry data, document-based database, CytoPy

Relation: https://figshare.com/articles/journal_contribution/Summary_of_microbiological_culture_results_for_peritoneal_dialysis_patients_with_acute_peritonitis_/14750422

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009071.s009

المؤلفون: Ross J. Burton (10941910), Raya Ahmed (803400), Simone M. Cuff (10941913), Sarah Baker (813920), Andreas Artemiou (10941916), Matthias Eberl (221359)

مصطلحات موضوعية: Microbiology, Genetics, Ecology, Immunology, Science Policy, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, user variation, cytometry analysis framework Cytome., open-source cytometry bioinformatics, phenotype T cell subsets, Python framework, Python ecosystem, cell data, software documentation, http, blood samples, handling high-dimensional, batch effects, mass cytometry, MIT license, algorithm agnostic design, cytometry data, document-based database, CytoPy

Relation: https://figshare.com/articles/journal_contribution/Performance_of_supervised_classification_algorithms_for_identifying_cell_populations_from_the_FlowCAP_competition_data_/14750419

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009071.s008

المؤلفون: Shalaby, Mamoun E., Hasan, Mohamed S., Elshorbagy, Mohammed S., Abo Raya, Ahmed R., Elsaie, Mohamed L.

المصدر: Journal of Cosmetic Dermatology ; volume 21, issue 3, page 1135-1142 ; ISSN 1473-2130 1473-2165

الاتاحة: http://dx.doi.org/10.1111/jocd.14156
https://onlinelibrary.wiley.com/doi/pdf/10.1111/jocd.14156
https://onlinelibrary.wiley.com/doi/full-xml/10.1111/jocd.14156

المؤلفون: Eric Giannoni, Guillem Sanchez Sanchez, Isoline Verdebout, Maria Papadopoulou, Moosa Rezwani, Raya Ahmed, Kristin Ladell, Kelly L. Miners, James E. McLaren, Donald J. Fraser, David A. Price, Matthias Eberl, Philipp K.A. Agyeman, Luregn J Schlapbach, David Vermijlen, Swiss Pediatric Sepsis Study

الاتاحة: http://dx.doi.org/10.1002/eji.202451190/v3/response1

المؤلفون: Becca Asquith, Rhiannon E. Jones, Kristin Ladell, Yan Zhang, Julio Lahoz-Beneytez, Laureline Roger, Raya Ahmed, Derek C. Macallan, Edward Chung Yern Wang, Duncan M. Baird, Kelly L. Miners, Joseph M. McCune, Christina Baboonian, Marc K. Hellerstein, David Price

المساهمون: Structure et Instabilité des Génomes (STRING), Institut de Chimie du CNRS (INC)-Muséum national d'Histoire naturelle (MNHN)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Muséum national d'Histoire naturelle (MNHN)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie du CNRS (INC)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Wellcome Trust, European Commission Directorate-General for Research and Innovation

المصدر: Cell Reports
Cell Reports, Elsevier Inc, 2020, 33 (11), pp.108501. ⟨10.1016/j.celrep.2020.108501⟩
Cell Reports, Vol 33, Iss 11, Pp 108501-(2020)
e5
e1

مصطلحات موضوعية: EXPRESSION, 0301 basic medicine, Telomerase, Enter keywords here, SUBSETS, CYTOMEGALOVIRUS, T-Lymphocytes, [SDV]Life Sciences [q-bio], ANTIGEN, [SDV.CAN]Life Sciences [q-bio]/Cancer, [SDV.BC]Life Sciences [q-bio]/Cellular Biology, Biology, Immunological memory, LYMPHOCYTES, 0601 Biochemistry and Cell Biology, General Biochemistry, Genetics and Molecular Biology, Epitope, 03 medical and health sciences, 0302 clinical medicine, CD57 Antigens, Antigen, In vivo, Report, INFECTION, Humans, [SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology, lcsh:QH301-705.5, KINETICS, ComputingMilieux_MISCELLANEOUS, LIFE-SPAN, Cell Proliferation, Science & Technology, Cell Biology, Phenotype, Telomere, Cell biology, 030104 developmental biology, lcsh:Biology (General), [SDV.GEN.GH]Life Sciences [q-bio]/Genetics/Human genetics, 1116 Medical Physiology, TELOMERE LENGTH, SURVIVAL, Life Sciences & Biomedicine, Immunologic Memory, 030217 neurology & neurosurgery, Intracellular

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::019bd1176b8dcb79c13d493b4d25cfba
https://hal.archives-ouvertes.fr/hal-03204476

المؤلفون: Simone Cuff, Sarah Baker, Andreas Artemiou, Raya Ahmed, Matthias Eberl, Ross J. Burton

المصدر: PLoS Computational Biology
PLoS Computational Biology, Vol 17, Iss 6, p e1009071 (2021)

مصطلحات موضوعية: 0301 basic medicine, Software documentation, Databases, Factual, Neutrophils, Computer science, Cell, computer.software_genre, Field (computer science), Machine Learning, White Blood Cells, Database and Informatics Methods, Immunophenotyping, 0302 clinical medicine, Animal Cells, T-Lymphocyte Subsets, Medicine and Health Sciences, Biology (General), MIT License, Data Management, Image Cytometry, computer.programming_language, 0303 health sciences, Ecology, T Cells, Applied Mathematics, Simulation and Modeling, Software Engineering, Replicate, medicine.anatomical_structure, Computational Theory and Mathematics, 030220 oncology & carcinogenesis, Modeling and Simulation, Physical Sciences, Engineering and Technology, Data mining, Cellular Types, Peritoneal Dialysis, Algorithms, Research Article, Computer and Information Sciences, QH301-705.5, Bioinformatics, Immune Cells, Immunology, Peritonitis, Research and Analysis Methods, 03 medical and health sciences, Cellular and Molecular Neuroscience, Signs and Symptoms, medicine, Genetics, Humans, Mass cytometry, Molecular Biology, Ecology, Evolution, Behavior and Systematics, 030304 developmental biology, Metadata, Blood Cells, business.industry, Biology and Life Sciences, Computational Biology, Cell Biology, Python (programming language), Pipeline (software), 030104 developmental biology, Programming Languages, Clinical Medicine, Software engineering, business, computer, Cytometry, Mathematics, Software, 030217 neurology & neurosurgery

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::96647c0bf47b2561a24c3f0fba09cd2a

المؤلفون: Ross J. Burton (10941910), Raya Ahmed (803400), Simone M. Cuff (10941913), Sarah Baker (813920), Andreas Artemiou (10941916), Matthias Eberl (221359)

مصطلحات موضوعية: Microbiology, Genetics, Ecology, Immunology, Science Policy, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, user variation, cytometry analysis framework Cytome., open-source cytometry bioinformatics, phenotype T cell subsets, Python framework, Python ecosystem, cell data, software documentation, http, blood samples, handling high-dimensional, batch effects, mass cytometry, MIT license, algorithm agnostic design, cytometry data, document-based database, CytoPy

Relation: https://figshare.com/articles/figure/Example_of_landmark_registration_to_align_peaks_of_high_density_in_the_probability_density_function_PDF_of_CD4_expression_on_blood_T_cells_for_a_target_distribution_and_chosen_reference_/14750398

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009071.s002

المؤلفون: Ross J. Burton (10941910), Raya Ahmed (803400), Simone M. Cuff (10941913), Sarah Baker (813920), Andreas Artemiou (10941916), Matthias Eberl (221359)

مصطلحات موضوعية: Microbiology, Genetics, Ecology, Immunology, Science Policy, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, user variation, cytometry analysis framework Cytome., open-source cytometry bioinformatics, phenotype T cell subsets, Python framework, Python ecosystem, cell data, software documentation, http, blood samples, handling high-dimensional, batch effects, mass cytometry, MIT license, algorithm agnostic design, cytometry data, document-based database, CytoPy

Relation: https://figshare.com/articles/figure/Individual_fluorochrome_inter-sample_variation_amongst_PBMCs_from_14_patient_samples_Reference_patient_is_shown_in_blue_with_subsequent_patients_overlaid_as_individual_red_lines_/14750395

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009071.s001

المؤلفون: Ross J. Burton (10941910), Raya Ahmed (803400), Simone M. Cuff (10941913), Sarah Baker (813920), Andreas Artemiou (10941916), Matthias Eberl (221359)

مصطلحات موضوعية: Microbiology, Genetics, Ecology, Immunology, Science Policy, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, user variation, cytometry analysis framework Cytome., open-source cytometry bioinformatics, phenotype T cell subsets, Python framework, Python ecosystem, cell data, software documentation, http, blood samples, handling high-dimensional, batch effects, mass cytometry, MIT license, algorithm agnostic design, cytometry data, document-based database, CytoPy

Relation: https://figshare.com/articles/figure/S4_Fig_-/14750404

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009071.s004

المؤلفون: Ross J. Burton (10941910), Raya Ahmed (803400), Simone M. Cuff (10941913), Sarah Baker (813920), Andreas Artemiou (10941916), Matthias Eberl (221359)

مصطلحات موضوعية: Microbiology, Genetics, Ecology, Immunology, Science Policy, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, user variation, cytometry analysis framework Cytome., open-source cytometry bioinformatics, phenotype T cell subsets, Python framework, Python ecosystem, cell data, software documentation, http, blood samples, handling high-dimensional, batch effects, mass cytometry, MIT license, algorithm agnostic design, cytometry data, document-based database, CytoPy

Relation: https://figshare.com/articles/figure/UMAP_plots_showing_all_clusters_as_obtained_by_FlowSOM_left_and_Phenograph_right_and_coloured_according_to_patient_origin_/14750407

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009071.s005

المؤلفون: Ross J. Burton (10941910), Raya Ahmed (803400), Simone M. Cuff (10941913), Sarah Baker (813920), Andreas Artemiou (10941916), Matthias Eberl (221359)

مصطلحات موضوعية: Microbiology, Genetics, Ecology, Immunology, Science Policy, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, user variation, cytometry analysis framework Cytome., open-source cytometry bioinformatics, phenotype T cell subsets, Python framework, Python ecosystem, cell data, software documentation, http, blood samples, handling high-dimensional, batch effects, mass cytometry, MIT license, algorithm agnostic design, cytometry data, document-based database, CytoPy

Relation: https://figshare.com/articles/figure/Autonomous_gating_strategy_for_identifying_blood_T_cell_subsets_Threshold_straight_red_line_gates_are_obtained_using_density-based_algorithms_as_the_ThresholdGate_class_elliptical_gates_are_obtained_using_the_EllipseGate_class_and_Gaussian_/14750401

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009071.s003

المؤلفون: Ross J. Burton (10941910), Raya Ahmed (803400), Simone M. Cuff (10941913), Sarah Baker (813920), Andreas Artemiou (10941916), Matthias Eberl (221359)

مصطلحات موضوعية: Microbiology, Genetics, Ecology, Immunology, Science Policy, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, user variation, cytometry analysis framework Cytome., open-source cytometry bioinformatics, phenotype T cell subsets, Python framework, Python ecosystem, cell data, software documentation, http, blood samples, handling high-dimensional, batch effects, mass cytometry, MIT license, algorithm agnostic design, cytometry data, document-based database, CytoPy

Relation: https://figshare.com/articles/figure/Batch_effect_correction_with_Harmony_for_peritoneal_effluent_stained_for_T_cell_subsets_top_and_leukocyte_subsets_bottom_/14750410

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009071.s006