المؤلفون: David Gomez-Zepeda, Danielle Arnold-Schild, Julian Beyrle, Arthur Declercq, Ralf Gabriels, Elena Kumm, Annica Preikschat, Mateusz Krzysztof Łącki, Aurélie Hirschler, Jeewan Babu Rijal, Christine Carapito, Lennart Martens, Ute Distler, Hansjörg Schild, Stefan Tenzer

المصدر: Nature Communications, Vol 15, Iss 1, Pp 1-18 (2024)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/154f3e9e47394f8b9f6d870b4ac45be5

المؤلفون: Myrsini Sakarika, Frederiek-Maarten Kerckhof, Lotte Van Peteghem, Alexandra Pereira, Tim Van Den Bossche, Robbin Bouwmeester, Ralf Gabriels, Delphi Van Haver, Barbara Ulčar, Lennart Martens, Francis Impens, Nico Boon, Ramon Ganigué, Korneel Rabaey

المصدر: Microbial Cell Factories, Vol 22, Iss 1, Pp 1-15 (2023)

مصطلحات موضوعية: Amino acid profile, Growth rate, Nucleic acid, Nutritional quality, Protein profile, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1475-2859

URL الوصول: https://doaj.org/article/c21a30b896344243ae9bf3489916e70f

المؤلفون: Rupert L. Mayer, Rein Verbeke, Caroline Asselman, Ilke Aernout, Adillah Gul, Denzel Eggermont, Katie Boucher, Fabien Thery, Teresa M. Maia, Hans Demol, Ralf Gabriels, Lennart Martens, Christophe Bécavin, Stefaan C. De Smedt, Bart Vandekerckhove, Ine Lentacker, Francis Impens

المصدر: Nature Communications, Vol 13, Iss 1, Pp 1-17 (2022)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/97f012cb13b5447e97faef124f7e4dca

المؤلفون: Bart Van Puyvelde, Simon Daled, Sander Willems, Ralf Gabriels, Anne Gonzalez de Peredo, Karima Chaoui, Emmanuelle Mouton-Barbosa, David Bouyssié, Kurt Boonen, Christopher J. Hughes, Lee A. Gethings, Yasset Perez-Riverol, Nic Bloomfield, Stephen Tate, Odile Schiltz, Lennart Martens, Dieter Deforce, Maarten Dhaenens

المصدر: Scientific Data, Vol 9, Iss 1, Pp 1-12 (2022)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2052-4463

URL الوصول: https://doaj.org/article/f0a8db72f31a46abb715ed17518c0a07

المؤلفون: Bart Van Puyvelde, Katleen Van Uytfanghe, Olivier Tytgat, Laurence Van Oudenhove, Ralf Gabriels, Robbin Bouwmeester, Simon Daled, Tim Van Den Bossche, Pathmanaban Ramasamy, Sigrid Verhelst, Laura De Clerck, Laura Corveleyn, Sander Willems, Nathan Debunne, Evelien Wynendaele, Bart De Spiegeleer, Peter Judak, Kris Roels, Laurie De Wilde, Peter Van Eenoo, Tim Reyns, Marc Cherlet, Emmie Dumont, Griet Debyser, Ruben t’Kindt, Koen Sandra, Surya Gupta, Nicolas Drouin, Amy Harms, Thomas Hankemeier, Donald J. L. Jones, Pankaj Gupta, Dan Lane, Catherine S. Lane, Said El Ouadi, Jean-Baptiste Vincendet, Nick Morrice, Stuart Oehrle, Nikunj Tanna, Steve Silvester, Sally Hannam, Florian C. Sigloch, Andrea Bhangu-Uhlmann, Jan Claereboudt, N. Leigh Anderson, Morteza Razavi, Sven Degroeve, Lize Cuypers, Christophe Stove, Katrien Lagrou, Geert A. Martens, Dieter Deforce, Lennart Martens, Johannes P. C. Vissers, Maarten Dhaenens

المصدر: JACS Au, Vol 1, Iss 6, Pp 750-765 (2021)

مصطلحات موضوعية: Chemistry, QD1-999

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2691-3704

URL الوصول: https://doaj.org/article/da292fad17a3438b99d67c0bc99f67ad

المؤلفون: Christopher Ashwood, Wout Bittremieux, Eric W. Deutsch, Nadezhda T. Doncheva, Viktoria Dorfer, Ralf Gabriels, Vladimir Gorshkov, Surya Gupta, Andrew R. Jones, Lukas Käll, Dominik Kopczynski, Lydie Lane, Ludwig Lautenbacher, Marc Legeay, Marie Locard-Paulet, Bart Mesuere, Yasset Perez-Riverol, Eugen Netz, Julianus Pfeuffer, Timo Sachsenberg, Renee Salz, Patroklos Samaras, Henning Schiebenhoefer, Tobias Schmidt, Veit Schwämmle, Alessio Soggiu, Julian Uszkoreit, Tim Van Den Bossche, Bart Van Puyvelde, Joeri Van Strien, Pieter Verschaffelt, Henry Webel, Sander Willems

المصدر: EuPA Open Proteomics, Vol 24, Iss , Pp 1-6 (2020)

مصطلحات موضوعية: Computational mass spectrometry, Mass spectrometry, Proteomics, Bioinformatics, Spectrum clustering, Phosphoproteomics, Genetics, QH426-470

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2212968520300015; https://doaj.org/toc/2212-9685

URL الوصول: https://doaj.org/article/89b6c3b9a90f4f73b2e9b77d5a0186f4

المؤلفون: Marlies K. R. Peeters, Geert Baggerman, Ralf Gabriels, Elise Pepermans, Gerben Menschaert, Kurt Boonen

المصدر: Frontiers in Cell and Developmental Biology, Vol 9 (2021)

مصطلحات موضوعية: peptidomics, proteogenomics analysis, neuropeptide, sORF-encoded polypeptide (SEP), micropeptide, spectral intensity prediction, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcell.2021.720570/full; https://doaj.org/toc/2296-634X

URL الوصول: https://doaj.org/article/32d3feaf9a954886b8ed6c6941502784

المؤلفون: Louise M. Buur, Arthur Declercq, Marina Strobl, Robbin Bouwmeester, Sven Degroeve, Lennart Martens, Viktoria Dorfer, Ralf Gabriels

مصطلحات موضوعية: Biophysics, Biochemistry, Biotechnology, Immunology, Mental Health, Space Science, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, wider proteomics community, increase peptide identifications, https :// github, established search engine, challenging data sets, cell data sets, boost peptide identifications, addressing previous limitations, among new features, publicly available single, modular python api, graphical user interface, friendly platform designed, 2 , ms amanda 3, friendly platform, ms amanda, new version, new release, rescore 3, valuable tool, two tools

Relation: https://figshare.com/articles/journal_contribution/MS_sup_2_sup_Rescore_3_0_Is_a_Modular_Flexible_and_User-Friendly_Platform_to_Boost_Peptide_Identifications_as_Showcased_with_MS_Amanda_3_0/25423405

الاتاحة: https://doi.org/10.1021/acs.jproteome.3c00785.s001

المؤلفون: Myrsini Sakarika, Frederiek-Maarten Kerckhof, Lotte Van Peteghem, Alexandra Pereira, Tim Van Den Bossche, Robbin Bouwmeester, Ralf Gabriels, Delphi Van Haver, Barbara Ulčar, Lennart Martens, Francis Impens, Nico Boon, Ramon Ganigué, Korneel Rabaey

مصطلحات موضوعية: Biochemistry, Medicine, Biotechnology, Ecology, Developmental Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Amino acid profile, Growth rate, Nucleic acid, Nutritional quality, Protein profile

Relation: https://figshare.com/articles/journal_contribution/Additional_file_1_of_The_nutritional_composition_and_cell_size_of_microbial_biomass_for_food_applications_are_defined_by_the_growth_conditions/24784624

الاتاحة: https://doi.org/10.6084/m9.figshare.24784624.v1
https://figshare.com/articles/journal_contribution/Additional_file_1_of_The_nutritional_composition_and_cell_size_of_microbial_biomass_for_food_applications_are_defined_by_the_growth_conditions/24784624

المؤلفون: Bart Van Puyvelde (7325378), Katleen Van Uytfanghe (8045234), Laurence Van Oudenhove (235865), Ralf Gabriels (8903903), Tessa Van Royen (14242055), Arne Matthys (14242058), Morteza Razavi (375073), Richard Yip (2198194), Terry Pearson (59741), Nicolas Drouin (2626048), Jan Claereboudt (10740529), Dominic Foley (14236946), Robert Wardle (14236955), Kevin Wyndham (2052277), Thomas Hankemeier (135670), Donald Jones (1357), Xavier Saelens (28372), Geert Martens (14242061), Christophe P. Stove (1235217), Dieter Deforce (20882), Lennart Martens (14237), Johannes P.C. Vissers (7241525), N. Leigh Anderson (10740532), Maarten Dhaenens (466100)

مصطلحات موضوعية: Biochemistry, Medicine, Biotechnology, Cancer, Infectious Diseases, Computational Biology, Biological Sciences not elsewhere classified, targeting different biomolecules, strong positive correlation, mass spectrometric measurement, fold improvement compared, enrich proteotypic peptides, early warning system, automatable sample preparation, adding siscapa technology, 30 – 31, many different pathogens, digested patient samples, qpcr detection beyond, 2 , pooled samples, pathogens within, 2 nucleocapsid, direct detection, b detection, quantification cycle, propose targets, live virus, large numbers, independent assay

Relation: https://figshare.com/articles/journal_contribution/Cov_sup_2_sup_MS_An_Automated_and_Quantitative_Matrix-Independent_Assay_for_Mass_Spectrometric_Measurement_of_SARS-CoV_2_Nucleocapsid_Protein/21706043

الاتاحة: https://doi.org/10.1021/acs.analchem.2c01610.s001

المؤلفون: Ralf Gabriels, Arthur Declercq, Robbin Bouwmeester, Sven Degroeve, Lennart Martens

المصدر: Journal of Proteome Research. 22:557-560

مصطلحات موضوعية: General Chemistry, Biochemistry

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dddb05014b68e95660add3769928c83c
https://doi.org/10.1021/acs.jproteome.2c00609

المؤلفون: Bart Van Puyvelde, Katleen Van Uytfanghe, Laurence Van Oudenhove, Ralf Gabriels, Tessa Van Royen, Arne Matthys, Morteza Razavi, Richard Yip, Terry Pearson, Nicolas Drouin, Jan Claereboudt, Dominic Foley, Robert Wardle, Kevin Wyndham, Thomas Hankemeier, Donald Jones, Xavier Saelens, Geert Martens, Christophe P. Stove, Dieter Deforce, Lennart Martens, Johannes P.C. Vissers, N. Leigh Anderson, Maarten Dhaenens

المصدر: Analytical Chemistry. 94:17379-17387

مصطلحات موضوعية: Analytical Chemistry

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::a10469a4d2de32f2257dfa6ebf78bf54
https://doi.org/10.1021/acs.analchem.2c01610

المؤلفون: Arthur Declercq, Robbin Bouwmeester, Cristina Chiva, Eduard Sabidó, Aurélie Hirschler, Christine Carapito, Lennart Martens, Sven Degroeve, Ralf Gabriels

المصدر: Nucleic Acids Research.

مصطلحات موضوعية: Genetics

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::8257099fe01a35953c782d22e33bfbd7
https://doi.org/10.1093/nar/gkad335

المؤلفون: Tobias G. Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A. Neely, Magnus Palmblad, Yasset Perez-Riverol, Tobias Schmidt, Juan Antonio Vizcaíno, Eric W. Deutsch

المصدر: Journal of Proteome Research, 22(2), 632-636. AMER CHEMICAL SOC
JOURNAL OF PROTEOME RESEARCH

مصطلحات موضوعية: Technology and Engineering, machine learning, proteomics, educational platform, Medicine and Health Sciences, Biology and Life Sciences, deep learning, General Chemistry, bioinformatics, Biochemistry, community platform

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::836e703fc3403d47ed95c4b6be9f9465
https://hdl.handle.net/1887/3593850

المؤلفون: Eric W. Deutsch, Juan Antonio Vizcaíno, Andrew R. Jones, Pierre-Alain Binz, Henry Lam, Joshua Klein, Wout Bittremieux, Yasset Perez-Riverol, David L. Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D. Mak, Shin Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy Carver, Benjamin Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C. E. Tosatto, Sandra E. Orchard

المصدر: Journal of proteome research
JOURNAL OF PROTEOME RESEARCH

مصطلحات موضوعية: Settore BIO/18, Human Proteome Organization, Biology and Life Sciences, General Chemistry, Biochemistry, Proteomics Standards Initiative, Chemistry, proteomics, Medicine and Health Sciences, standards, mass spectrometry, molecular interactions, Biology

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0c134d30524765e956ad3db0844e8b11
https://hdl.handle.net/10067/1935320151162165141

المؤلفون: Bart, Van Puyvelde, Katleen, Van Uytfanghe, Laurence, Van Oudenhove, Ralf, Gabriels, Tessa, Van Royen, Arne, Matthys, Morteza, Razavi, Richard, Yip, Terry, Pearson, Nicolas, Drouin, Jan, Claereboudt, Dominic, Foley, Robert, Wardle, Kevin, Wyndham, Thomas, Hankemeier, Donald, Jones, Xavier, Saelens, Geert, Martens, Christophe P, Stove, Dieter, Deforce, Lennart, Martens, Johannes P C, Vissers, N Leigh, Anderson, Maarten, Dhaenens

المصدر: Analytical chemistry. 94(50)

مصطلحات موضوعية: COVID-19 Testing, SARS-CoV-2, Clinical Laboratory Techniques, Humans, COVID-19, Peptides, Sensitivity and Specificity, Mass Spectrometry

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::78004c4e9ae86aaf403be647a55e837a
https://pubmed.ncbi.nlm.nih.gov/36490367

المؤلفون: Sven Degroeve, Niels Hulstaert, Robbin Bouwmeester, Lennart Martens, Ralf Gabriels

المصدر: NATURE METHODS
Nature Methods

مصطلحات موضوعية: Proteome, Computer science, Datasets as Topic, Peptide, computer.software_genre, 01 natural sciences, Biochemistry, Atomic composition, Graphical user interface, media_common, computer.programming_language, chemistry.chemical_classification, 0303 health sciences, 030302 biochemistry & molecular biology, Ambiguity, Identification (information), Algorithms, Biotechnology, TheoryofComputation_COMPUTATIONBYABSTRACTDEVICES, media_common.quotation_subject, Computational biology, Machine learning, SEQUENCE, Peptide Mapping, 03 medical and health sciences, Deep Learning, REVEALS, Humans, RATES, Molecular Biology, 030304 developmental biology, IDENTIFICATION, business.industry, Deep learning, 010401 analytical chemistry, Biology and Life Sciences, Proteins, Cell Biology, Python (programming language), PERFORMANCE LIQUID-CHROMATOGRAPHY, Peptide Fragments, 0104 chemical sciences, Workflow, ComputingMethodologies_PATTERNRECOGNITION, chemistry, Artificial intelligence, business, Protein Processing, Post-Translational, computer, Retention time

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e9993332034d36c91da5990c88344352
https://doi.org/10.1038/s41592-021-01301-5

المؤلفون: Declercq Arthur, Robbin Bouwmeester, Cristina Chiva, Eduard Sabidó, Aurélie Hirschler, Christine Carapito, Sven Degroeve, Lennart Martens, Ralf Gabriels

مصطلحات موضوعية: MS²PIP, Machine learning, Peak intensity predictions

Relation: https://doi.org/10.5281/zenodo.7669701; https://doi.org/10.5281/zenodo.7669702; oai:zenodo.org:7669702

الاتاحة: https://doi.org/10.5281/zenodo.7669702

المؤلفون: Ralf Gabriels, ArthurDeclercq

Relation: https://github.com/RalfG/cascade-config/tree/v0.4.0; https://doi.org/10.5281/zenodo.8108914; https://doi.org/10.5281/zenodo.8109824; oai:zenodo.org:8109824

الاتاحة: https://doi.org/10.5281/zenodo.8109824

المؤلفون: Ralf Gabriels, Dries, Jean-Paul Calderone, Alecks Gates, Lev Levitsky, Ari Hartikainen, Ewout ter Hoeven, Brian Helba, Kunal Mehta, Marco Köpcke, Michael R. Crusoe, Min RK, T.Yamada, odidev, skshetry

Relation: https://github.com/RalfG/python-wheels-manylinux-build/tree/v0.7.0; https://doi.org/10.5281/zenodo.6908799; https://doi.org/10.5281/zenodo.7558715; oai:zenodo.org:7558715

الاتاحة: https://doi.org/10.5281/zenodo.7558715