المؤلفون: Lisotto, Paola, Raangs, Erwin C, Couto, Natacha, Rosema, Sigrid, Lokate, Mariëtte, Zhou, Xuewei, Friedrich, Alexander W, Rossen, John W A, Harmsen, Hermie J M, Bathoorn, Erik, Chlebowicz-Fliss, Monika A

المصدر: Lisotto , P , Raangs , E C , Couto , N , Rosema , S , Lokate , M , Zhou , X , Friedrich , A W , Rossen , J W A , Harmsen , H J M , Bathoorn , E & Chlebowicz-Fliss , M A 2021 , ' Long-read sequencing-based in silico phage typing of vancomycin-resistant Enterococcus faecium ' , BMC Genomics , vol. 22 , no. 1 , 758 . https://doi.org/10.1186/s12864-021-08080-5

مصطلحات موضوعية: Bacteriophage Typing, Computer Simulation, Cross Infection, Disease Outbreaks, Enterococcus faecium/genetics, Gram-Positive Bacterial Infections/epidemiology, Humans, Multilocus Sequence Typing, Vancomycin, Vancomycin-Resistant Enterococci/genetics

وصف الملف: application/pdf

الاتاحة: https://hdl.handle.net/11370/289b5b19-d070-4d47-8219-d4d9407a57e3
https://research.rug.nl/en/publications/289b5b19-d070-4d47-8219-d4d9407a57e3
https://doi.org/10.1186/s12864-021-08080-5
https://pure.rug.nl/ws/files/192841795/s12864_021_08080_5.pdf

المؤلفون: Puertolas-Balint, Fabiola, Rossen, John W. A., dos Santos, Claudy Oliveira, Chlebowicz, Monika M. A., Raangs, Erwin C., van Putten, Maarten L., Sola-Campoy, Pedro J., Han, Li, Schmidt, Martina, Garcia-Cobos, Silvia

المصدر: Puertolas-Balint , F , Rossen , J W A , dos Santos , C O , Chlebowicz , M M A , Raangs , E C , van Putten , M L , Sola-Campoy , P J , Han , L , Schmidt , M & Garcia-Cobos , S 2019 , ' Revealing the Virulence Potential o f Clinical and Environmental Aspergillus fumigatus Isolates Using Whole-Genome Sequencing ' , Frontiers in Microbiology , vol. 10 , 1970 . https://doi.org/10.3389/fmicb.2019.01970

مصطلحات موضوعية: Aspergillus fumigatus, virulence, whole-genome sequencing, clinical and environmental isolates, gene database, READ ALIGNMENT, RESISTANCE, STRAINS, GENES

وصف الملف: application/pdf

الاتاحة: https://hdl.handle.net/11370/6ef9d92e-f384-4d2c-8bc7-4b0d9a0a4c07
https://research.rug.nl/en/publications/6ef9d92e-f384-4d2c-8bc7-4b0d9a0a4c07
https://doi.org/10.3389/fmicb.2019.01970
https://pure.rug.nl/ws/files/97128511/fmicb_10_01970.pdf

المؤلفون: Lizarazo, Erley, Couto, Natacha, Vincenti-Gonzalez, Maria, Raangs, Erwin C., Velasco, Zoraida, Bethencourt, Sarah, Jaenisch, Thomas, Friedrich, Alexander W., Tami, Adriana, Rossen, John W.

المصدر: Lizarazo , E , Couto , N , Vincenti-Gonzalez , M , Raangs , E C , Velasco , Z , Bethencourt , S , Jaenisch , T , Friedrich , A W , Tami , A & Rossen , J W 2019 , ' Applied shotgun metagenomics approach for the genetic characterization of dengue viruses ' , Journal of Biotechnology: X , vol. 2 , 100009 . https://doi.org/10.1016/j.btecx.2019.100009

مصطلحات موضوعية: Arboviruses, Dengue, Molecular epidemiology, Next-generation sequencing, Shotgun metagenomics

وصف الملف: application/pdf

Relation: https://research.rug.nl/en/publications/ab8c915b-9898-40e7-a56f-778340eb7f9c

الاتاحة: https://hdl.handle.net/11370/ab8c915b-9898-40e7-a56f-778340eb7f9c
https://research.rug.nl/en/publications/ab8c915b-9898-40e7-a56f-778340eb7f9c
https://doi.org/10.1016/j.btecx.2019.100009
https://pure.rug.nl/ws/files/91360089/1_s2.0_S2590155919300058_main.pdf

المؤلفون: Couto, Natacha, Schuele, Leonard, Raangs, Erwin C, Machado, Miguel P, Mendes, Catarina I, Jesus, Tiago F, Chlebowicz, Monika, Rosema, Sigrid, Ramirez, Mário, Carriço, João A, Autenrieth, Ingo B, Friedrich, Alex W, Peter, Silke, Rossen, John W

المصدر: Couto , N , Schuele , L , Raangs , E C , Machado , M P , Mendes , C I , Jesus , T F , Chlebowicz , M , Rosema , S , Ramirez , M , Carriço , J A , Autenrieth , I B , Friedrich , A W , Peter , S & Rossen , J W 2019 , ' Author Correction: Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens (vol 8, 13767, 2018) ' , Scientific Reports , vol. 9 , no. 1 , 6406 ....

وصف الملف: application/pdf

Relation: https://research.rug.nl/en/publications/619f662c-2022-4978-9ecc-d0ce9f289bf1

الاتاحة: https://hdl.handle.net/11370/619f662c-2022-4978-9ecc-d0ce9f289bf1
https://research.rug.nl/en/publications/619f662c-2022-4978-9ecc-d0ce9f289bf1
https://doi.org/10.1038/s41598-019-42134-9
https://pure.rug.nl/ws/files/81641763/s41598_019_42134_9_2_.pdf

المؤلفون: Lizarazo, Erley, Couto, Natacha, Vincenti-Gonzalez, Maria, Raangs, Erwin C, Jaenisch, Thomas, Friedrich, Alex W, Tami, Adriana, Rossen, John W

المصدر: Lizarazo , E , Couto , N , Vincenti-Gonzalez , M , Raangs , E C , Jaenisch , T , Friedrich , A W , Tami , A & Rossen , J W 2018 , ' Complete Coding Sequences of Five Dengue Virus Type 2 Clinical Isolates from Venezuela Obtained through Shotgun Metagenomics ' , Genome Announcements , vol. 6 , no. 25 , UNSP e00545-18 . https://doi.org/10.1128/genomeA.00545-18

وصف الملف: application/pdf

Relation: https://research.rug.nl/en/publications/4e9971fb-269f-4f15-b210-c826f612a039

الاتاحة: https://hdl.handle.net/11370/4e9971fb-269f-4f15-b210-c826f612a039
https://research.rug.nl/en/publications/4e9971fb-269f-4f15-b210-c826f612a039
https://doi.org/10.1128/genomeA.00545-18
https://pure.rug.nl/ws/files/62445471/Genome_Announc._2018_Lizarazo_.pdf

المؤلفون: Couto, Natacha, Chlebowicz, Monika A, Raangs, Erwin C, Friedrich, Alex W, Rossen, John W

المصدر: Couto , N , Chlebowicz , M A , Raangs , E C , Friedrich , A W & Rossen , J W 2018 , ' Complete Genome Sequences of Two Methicillin-Resistant Staphylococcus haemolyticus Isolates of Multilocus Sequence Type 25, First Detected by Shotgun Metagenomics ' , Genome Announcements , vol. 6 , no. 14 , e00036-18 . https://doi.org/10.1128/genomeA.00036-18

مصطلحات موضوعية: Journal Article

وصف الملف: application/pdf

Relation: https://research.rug.nl/en/publications/016e76a3-7266-41a7-861e-6d606ac19add

الاتاحة: https://hdl.handle.net/11370/016e76a3-7266-41a7-861e-6d606ac19add
https://research.rug.nl/en/publications/016e76a3-7266-41a7-861e-6d606ac19add
https://doi.org/10.1128/genomeA.00036-18
https://pure.rug.nl/ws/files/56667068/Complete_Genome_Sequences_of_Two_Methicillin_Resistant_Staphylococcus_haemolyticus_Isolates_of_Multilocus_Sequence_Type_25_First_Detected_by_Shotgun_Metagenomics.pdf

المؤلفون: Couto, Natacha, Schuele, Leonard, Raangs, Erwin C, Machado, Miguel P, Mendes, Catarina I, Jesus, Tiago F, Chlebowicz, Monika, Rosema, Sigrid, Ramirez, Mário, Carriço, João A, Autenrieth, Ingo B, Friedrich, Alex W, Peter, Silke, Rossen, John W

المصدر: Couto , N , Schuele , L , Raangs , E C , Machado , M P , Mendes , C I , Jesus , T F , Chlebowicz , M , Rosema , S , Ramirez , M , Carriço , J A , Autenrieth , I B , Friedrich , A W , Peter , S & Rossen , J W 2018 , ' Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens ' , Scientific Reports , vol. 8 , no. 1 , 13767 . https://doi.org/10.1038/s41598-018-31873-w

مصطلحات موضوعية: INFECTION, PLASMIDS, MOBILITY, SAMPLES

وصف الملف: application/pdf

الاتاحة: https://hdl.handle.net/11370/3e227837-49e7-4800-acc0-c7508322630a
https://research.rug.nl/en/publications/3e227837-49e7-4800-acc0-c7508322630a
https://doi.org/10.1038/s41598-018-31873-w
https://pure.rug.nl/ws/files/65007714/s41598_018_31873_w.pdf

المؤلفون: Deurenberg, Ruud H., Bathoorn, Erik, Chlebowicz, Monika A., Couto, Natacha, Ferdous, Mithila, Garcia-Cobos, Silvia, Kooistra-Smid, Anna M. D., Raangs, Erwin C., Rosema, Sigrid, Veloo, Alida C. M., Zhou, Kai, Friedrich, Alexander W., Rossen, John W. A.

المصدر: Deurenberg , R H , Bathoorn , E , Chlebowicz , M A , Couto , N , Ferdous , M , Garcia-Cobos , S , Kooistra-Smid , A M D , Raangs , E C , Rosema , S , Veloo , A C M , Zhou , K , Friedrich , A W & Rossen , J W A 2017 , ' Application of next generation sequencing in clinical microbiology and infection prevention ' , Journal of Biotechnology , vol. 243 , pp. 16-24 . https://doi.org/10.1016/j.jbiotec.2016.12.022

مصطلحات موضوعية: Infection prevention, Ion PGM (TM), Clinical microbiology, MiSeq, Next generation sequencing, Whole genome sequencing, KLEBSIELLA-PNEUMONIAE, BACTERIAL-MENINGITIS, GENOME SEQUENCE, TYPING METHODS, CHICKEN MEAT, METAGENOMICS, NETHERLANDS, ENTEROBACTERIACEAE, IDENTIFICATION, VISUALIZATION

وصف الملف: application/pdf

الاتاحة: https://hdl.handle.net/11370/2fa2b8ef-d6b1-4e2a-b5ae-741fd6236158
https://research.rug.nl/en/publications/2fa2b8ef-d6b1-4e2a-b5ae-741fd6236158
https://doi.org/10.1016/j.jbiotec.2016.12.022
https://pure.rug.nl/ws/files/41096472/Application_of_next_generation_sequencing_in_clinical_microbiology_and_infection_prevention.pdf

المؤلفون: Deurenberg, Ruud H., Bathoorn, Erik, Chlebowicz, Monika A., Monge Gomes do Couto, Natacha, Ferdous, Mithila, Garcia-Cobos, Silvia, Kooistra-Smid, Anna M. D., Raangs, Erwin C., Rosema, Sigrid, Veloo, Alida C. M., Zhou, Kai, Friedrich, Alexander W., Rossen, John W. A.

المصدر: Deurenberg , R H , Bathoorn , E , Chlebowicz , M A , Monge Gomes do Couto , N , Ferdous , M , Garcia-Cobos , S , Kooistra-Smid , A M D , Raangs , E C , Rosema , S , Veloo , A C M , Zhou , K , Friedrich , A W & Rossen , J W A 2017 , ' Reprint of "Application of next generation sequencing in clinical microbiology and infection prevention" ' , Journal of Biotechnology , vol. 250 , pp. 2-10 . https://doi.org/10.1016/j.jbiotec.2017.03.035

مصطلحات موضوعية: Infection prevention, Ion PGM (TM), Clinical microbiology, MiSeq, Next generation sequencing, Whole genome sequencing, KLEBSIELLA-PNEUMONIAE, BACTERIAL-MENINGITIS, GENOME SEQUENCE, TYPING METHODS, CHICKEN MEAT, METAGENOMICS, NETHERLANDS, ENTEROBACTERIACEAE, IDENTIFICATION, VISUALIZATION

وصف الملف: application/pdf

Relation: https://research.rug.nl/en/publications/a5d24415-32bf-4e1b-9a6d-163c30ec1a5a

الاتاحة: https://hdl.handle.net/11370/a5d24415-32bf-4e1b-9a6d-163c30ec1a5a
https://research.rug.nl/en/publications/a5d24415-32bf-4e1b-9a6d-163c30ec1a5a
https://doi.org/10.1016/j.jbiotec.2017.03.035
https://pure.rug.nl/ws/files/42736430/1_s2.0_S0168165616316686_main.pdf

المؤلفون: Glasner, Corinna, van Timmeren, Mirjan M., Stobernack, Tim, Omansen, Till F., Raangs, Erwin C., Rossen, John W., de Goffau, Marcus C., Arends, Jan P., Kampinga, Greetje A., Koedijk, Denny G. A. M., Neef, Jolanda, Buist, Girbe, Tavakol, Mehri, van Wamel, Willem J. B., Rutgers, Abraham, Stegeman, Coen A., Kallenberg, Cees G. M., Heeringa, Peter, van Dijl, Jan Maarten

المصدر: Scientific Reports ; volume 5, issue 1 ; ISSN 2045-2322

الاتاحة: http://dx.doi.org/10.1038/srep08188
https://www.nature.com/articles/srep08188
https://www.nature.com/articles/srep08188.pdf

المؤلفون: Couto, Natacha, Schuele, Leonard, Raangs, Erwin C., Machado, Miguel, Mendes, Catarina Inês, Machado, Tiago F., Chlebowicz, Monika, Rosema, Sigrid, Carriço, João A., Ramirez, Mário, Autenrieth, Ingo, Friedrich, Alex W., Peter, Silke, Rossen, John W.

مصطلحات موضوعية: stomatognathic diseases, stomatognathic system, biochemical phenomena, metabolism, and nutrition, bacterial infections and mycoses, equipment and supplies

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::baf5b1c99ee0c4151a3606653fa8ca64

المؤلفون: Puértolas-Balint, Fabiola, Rossen, John W. A., Oliveira dos Santos, Claudy, Chlebowicz, Monika M. A., Raangs, Erwin C., van Putten, Maarten L., Sola-Campoy, Pedro J., Han, Li, Schmidt, Martina, García-Cobos, Silvia

المصدر: Frontiers in Microbiology; 9/4/2019, p1-12, 12p

مصطلحات موضوعية: ASPERGILLUS fumigatus, COMPARATIVE genomics, FUNGAL genomes, TANDEM repeats, SINGLE nucleotide polymorphisms, METABOLITES

المؤلفون: Couto, Natacha, Schuele, Leonard, Raangs, Erwin C., Machado, Miguel P., Mendes, Catarina I., Jesus, Tiago F., Chlebowicz, Monika, Rosema, Sigrid, Ramirez, Mário, Carriço, João A., Autenrieth, Ingo B., Friedrich, Alex W., Peter, Silke, Rossen, John W.

المصدر: Scientific Reports; 4/17/2019, Vol. 9 Issue 1, pN.PAG-N.PAG, 1p