نتائج البحث - "RNA-sequencing"

المؤلفون: Zhao, Liuyang¹ (AUTHOR), Jiang, Landu² (AUTHOR), Xie, Yufeng³ (AUTHOR), Huang, JianHao³ (AUTHOR), Xie, Haoran⁴ (AUTHOR), Tian, Jun^5,6 (AUTHOR) tianj@sustech.edu.cn, Zhang, Dian¹ (AUTHOR) tianj@sustech.edu.cn

المصدر: Briefings in Bioinformatics. Nov2024, Vol. 25 Issue 6, p1-11. 11p.

مصطلحات موضوعية: GENE expression profiling, RNA sequencing, DEEP learning, TRANSFER of training, KNOWLEDGE transfer

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6

Academic Journal

Clustering scRNA-seq data with the cross-view collaborative information fusion strategy.

المؤلفون: Lou, Zhengzheng¹ (AUTHOR), Wei, Xiaojiao¹ (AUTHOR), Hu, Yuanhao¹ (AUTHOR), Hu, Shizhe¹ (AUTHOR), Wu, Yucong¹ (AUTHOR), Tian, Zhen^1,2 (AUTHOR) ieztian@zzu.edu.cn

المصدر: Briefings in Bioinformatics. Nov2024, Vol. 25 Issue 6, p1-16. 16p.

مصطلحات موضوعية: GENE expression, RNA sequencing, SOURCE code, CELL anatomy, CELL analysis

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7

Academic Journal

COFFEE: consensus single cell-type specific inference for gene regulatory networks.

المؤلفون: Lodi, Musaddiq K¹ (AUTHOR), Chernikov, Anna² (AUTHOR), Ghosh, Preetam³ (AUTHOR) pghosh@vcu.edu

المصدر: Briefings in Bioinformatics. Nov2024, Vol. 25 Issue 6, p1-19. 19p.

مصطلحات موضوعية: *ALGORITHMS, GENE regulatory networks, RNA sequencing, COFFEE, PYTHONS

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8

Academic Journal

scHyper: reconstructing cell–cell communication through hypergraph neural networks.

المؤلفون: Li, Wenying¹ (AUTHOR), Wang, Haiyun¹ (AUTHOR), Zhao, Jianping¹ (AUTHOR) jpzhao@xju.edu.cn, Xia, Junfeng^1,2 (AUTHOR) jpzhao@xju.edu.cn, Sun, Xiaoqiang³ (AUTHOR) jpzhao@xju.edu.cn

المصدر: Briefings in Bioinformatics. Sep2024, Vol. 25 Issue 5, p1-11. 11p.

مصطلحات موضوعية: *TELECOMMUNICATION systems, RNA sequencing, DEEP learning, TUMOR microenvironment, GLOBAL method of teaching

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9

Academic Journal

CHAI: consensus clustering through similarity matrix integration for cell-type identification.

المؤلفون: Lodi, Musaddiq K¹ (AUTHOR), Lodi, Muzammil² (AUTHOR), Osei, Kezie³ (AUTHOR), Ranganathan, Vaishnavi⁴ (AUTHOR), Hwang, Priscilla⁵ (AUTHOR), Ghosh, Preetam² (AUTHOR) pghosh@vcu.edu

المصدر: Briefings in Bioinformatics. Sep2024, Vol. 25 Issue 5, p1-15. 15p.

مصطلحات موضوعية: *ALGORITHMS, RNA sequencing, TRANSCRIPTOMES, BIOLOGY

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10

Academic Journal

scLEGA: an attention-based deep clustering method with a tendency for low expression of genes on single-cell RNA-seq data.

المؤلفون: Liu, Zhenze¹ (AUTHOR), Liang, Yingjian² (AUTHOR), Wang, Guohua^3,4 (AUTHOR) ghwang@nefu.edu.cn, Zhang, Tianjiao³ (AUTHOR) ghwang@nefu.edu.cn

المصدر: Briefings in Bioinformatics. Sep2024, Vol. 25 Issue 5, p1-13. 13p.

مصطلحات موضوعية: *SCALABILITY, RNA sequencing, GENES, HETEROGENEITY, TISSUES

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Dissertation/ Thesis

Charting the heterogeneity of healthy and malignant immune cells, one cell at a time

المؤلفون: Massoni Badosa, Ramon

المساهمون: University/Department: Universitat Pompeu Fabra. Departament de Medicina i Ciències de la Vida

Thesis Advisors: Heyn, Holger, Martín-Subero, José Ignacio

المصدر: TDX (Tesis Doctorals en Xarxa)

مصطلحات موضوعية: Single-cell RNA-sequencing, Sampling artifacts, Tonsil, Human Cell Atlas, Richter’s transformation, Seqüenciació d’ARN de cèl·lules individuals, Artefactes de mostreig, Amígdala, Atles de Cèl·lules Humanes, Transformació de Richter

وصف الملف: application/pdf

URL الوصول: http://hdl.handle.net/10803/687944

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12

Academic Journal

TDO2 + cancer-associated fibroblasts mediate cutaneous squamous cell carcinoma immune escape via impeding infiltration of CD8 + T cells.

المؤلفون: Lu, Fangqi¹ (AUTHOR), Yan, Guorong¹ (AUTHOR), Zhao, Zijun¹ (AUTHOR), Zheng, Zhe¹ (AUTHOR), Wu, Yuhao¹ (AUTHOR), Wen, Long¹ (AUTHOR), Liu, Yeqaing² (AUTHOR), Zeng, Qingyu¹ (AUTHOR) zengqingyu2011@tongji.edu.cn, Zhang, Guolong¹ (AUTHOR) glzhangtj@tongji.edu.cn

المصدر: Cancer Immunology, Immunotherapy. Feb2025, Vol. 74 Issue 2, p1-13. 13p.

مصطلحات موضوعية: *MEDICAL sciences, *RNA sequencing, *SQUAMOUS cell carcinoma, *T cells, *FIBROBLASTS

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13

Academic Journal

Disulfiram Alleviates MTX-Induced Pulmonary Fibrosis by Inhibiting EMT in Type 2 Alveolar Epithelial Cells.

المؤلفون: Wu, Xiaohui¹ (AUTHOR) wuxh@xiyi.edu.cn, Xu, Hong² (AUTHOR), Zhang, Zhaohua³ (AUTHOR), Ma, Ziyi¹ (AUTHOR), Zhang, Linyi¹ (AUTHOR), Wang, Chunyang¹ (AUTHOR), Lan, Kai¹ (AUTHOR), Li, Rong¹ (AUTHOR), Chen, Min¹ (AUTHOR)

المصدر: Lung. 2025, Vol. 203 Issue 1, p1-10. 10p.

مصطلحات موضوعية: *RNA sequencing, *EPITHELIAL-mesenchymal transition, *EPITHELIAL cells, *DRINKING (Physiology), *DISULFIRAM

14

Academic Journal

scSMD: a deep learning method for accurate clustering of single cells based on auto-encoder.

المؤلفون: Cui, Xiaoxu^1,2,3 (AUTHOR) m18621837168@163.com, Wu, Renkai^3,4 (AUTHOR) wurk@shu.edu.cn, Liu, Yinghao^1,2,3 (AUTHOR) 18616528897@163.com, Chen, Peizhan⁵ (AUTHOR) pzchen@me.com, Chang, Qing³ (AUTHOR) robie0510@hotmail.com, Liang, Pengchen⁴ (AUTHOR) liangpengchen@shu.edu.cn, He, Changyu³ (AUTHOR) hechangyu.2008@163.com

المصدر: BMC Bioinformatics. 1/29/2025, Vol. 26 Issue 1, p1-17. 17p.

مصطلحات موضوعية: *NEGATIVE binomial distribution, *RNA sequencing, *AUTOENCODER, *TRANSCRIPTOMES, *OSTEOSARCOMA, *DEEP learning

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15

Academic Journal

Correcting scale distortion in RNA sequencing data: Correcting Scale Distortion in RNA Sequencing Data: C.Thron, F.Jafari.

المؤلفون: Thron, Christopher¹ (AUTHOR) thron@tamuct.edu, Jafari, Farhad² (AUTHOR) fjafari@umn.edu

المصدر: BMC Bioinformatics. 1/28/2025, Vol. 26 Issue 1, p1-29. 29p.

مصطلحات موضوعية: *GENE expression, *RNA sequencing, *NUCLEOTIDE sequence, *LIFE sciences, *RECEIVER operating characteristic curves

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16

Academic Journal

Cell signaling communication within papillary craniopharyngioma revealed by an integrated analysis of single-cell RNA sequencing and bulk RNA sequencing.

المؤلفون: Zhu, Xiaoyue^1,2,3 (AUTHOR), Jia, Yanfei⁴ (AUTHOR), Zhao, Zicheng¹ (AUTHOR), Zhang, Xiaoyu¹ (AUTHOR), Zhao, Yunlong¹ (AUTHOR), Gui, Songbai⁴ (AUTHOR) guisongbai@yeah.net, Yang, Xiu-An^1,5 (AUTHOR) yangxiuan07@mails.ucas.edu.cn

المصدر: Journal of Translational Medicine. 1/27/2025, Vol. 23 Issue 1, p1-18. 18p.

مصطلحات موضوعية: *RNA sequencing, *EPITHELIAL-mesenchymal transition, *LIFE sciences, *CELL communication, *INTERFERON gamma

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17

Academic Journal

Consensus representation of multiple cell–cell graphs from gene signaling pathways for cell type annotation.

المؤلفون: Huang, Yu-An^1,2 (AUTHOR) yuanhuang@nwpu.edu.cn, Li, Yue-Chao¹ (AUTHOR) YuechaoLi1998@gmail.com, You, Zhu-Hong³ (AUTHOR) zhuhongyou@gmail.com, Hu, Lun⁴ (AUTHOR) hulun@ms.xjb.ac.cn, Hu, Peng-Wei⁴ (AUTHOR) hupengwei@hotmail.com, Wang, Lei⁵ (AUTHOR) leiwang@cumt.edu.cn, Peng, Yuzhong⁶ (AUTHOR) jedison@163.com, Huang, Zhi-An⁷ (AUTHOR) huang.za@cityu-dg.edu.cn

المصدر: BMC Biology. 1/23/2025, Vol. 23 Issue 1, p1-21. 21p.

مصطلحات موضوعية: *RNA sequencing, *GENE expression, *CELLULAR signal transduction, *CELL communication, *SYSTEMS theory

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18

Academic Journal

Comprehensive single-cell atlas of colorectal neuroendocrine tumors with liver metastases: unraveling tumor microenvironment heterogeneity between primary lesions and metastases.

المؤلفون: Deng, Yiqiao¹ (AUTHOR), Chen, Qichen² (AUTHOR), Guo, Chengyao¹ (AUTHOR), Chen, Jinghua¹ (AUTHOR), Li, Xin¹ (AUTHOR), Li, Zhiyu¹ (AUTHOR), Zhang, Yefan¹ (AUTHOR), Zhao, Jianjun¹ (AUTHOR), Zhou, Jianguo¹ (AUTHOR), Cai, Jianqiang¹ (AUTHOR), Yan, Tao³ (AUTHOR) blizzardyt@163.com, Wang, Xiaobing⁴ (AUTHOR) wangxb@cicams.ac.cn, Bi, Xinyu¹ (AUTHOR) beexy1971@163.com, Huang, Zhen¹ (AUTHOR) pumchuangzhen@126.com, Zhao, Hong¹ (AUTHOR) zhaohong@cicams.ac.cn

المصدر: Molecular Cancer. 1/21/2025, Vol. 24 Issue 1, p1-25. 25p.

مصطلحات موضوعية: *MEDICAL sciences, *RNA sequencing, *NUCLEOTIDE sequence, *KILLER cells, *CELL analysis

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19

Academic Journal

Characteristics of transcriptome and chromatin accessibility in the peripheral blood after acute hypoxia exposure.

المؤلفون: Zeng, Kuo¹ (AUTHOR) 1057903283@qq.com, Yuan, Pei-ru² (AUTHOR) yuanpeiru@163.com, Xuan, Jin-feng^3,4,5 (AUTHOR) jfxuan@cmu.edu.cn, Zhao, Lai-xi^3,4,5 (AUTHOR) 1476174036@qq.com, Li, Xiao-na^3,4,5 (AUTHOR) xnli@cmu.edu.cn, Yao, Jun^3,4,5 (AUTHOR) yaojun198717@163.com, Zhao, Dong¹ (AUTHOR) zhaod@cupl.edu.cn

المصدر: BMC Biology. 1/21/2025, Vol. 23 Issue 1, p1-12. 12p.

مصطلحات موضوعية: *LIFE sciences, *RNA sequencing, *ALTITUDES, *CHROMATIN, *GENETICS

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20

Academic Journal

Cellular Senescence in Hepatocellular Carcinoma: Immune Microenvironment Insights via Machine Learning and In Vitro Experiments.

المؤلفون: Lu, Xinhe¹ (AUTHOR), Luo, Yuhang¹ (AUTHOR), Huang, Yun² (AUTHOR), Zhu, Zhiqiang³ (AUTHOR), Yin, Hongyan⁴ (AUTHOR) yinhy@hainanu.edu.cn, Xu, Shunqing³ (AUTHOR) yinhy@hainanu.edu.cn

المصدر: International Journal of Molecular Sciences. Jan2025, Vol. 26 Issue 2, p773. 25p.

مصطلحات موضوعية: *RNA interference, *RNA sequencing, *SMALL interfering RNA, *KILLER cells, *CELLULAR aging

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