المؤلفون: Cianferoni, Damiano

المساهمون: University/Department: Universitat Pompeu Fabra. Departament de Medicina i Ciències de la Vida

Thesis Advisors: Serrano Pubull, Luis

المصدر: TDX (Tesis Doctorals en Xarxa)

مصطلحات موضوعية: Protein engineering, FoldX, COVID-19, RNA docking, AlphaFold2, Enginyeria de proteïnes, Acoblament d'ARN

وصف الملف: application/pdf

URL الوصول: http://hdl.handle.net/10803/689148

المؤلفون: Kravchenko, Anna, Jacob de Vries, Sjoerd, Smaïl-Tabbone, Malika, Chauvot de Beauchene, Isaure

المساهمون: Computational Algorithms for Protein Structures and Interactions (CAPSID), Inria Nancy - Grand Est, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Department of Complex Systems, Artificial Intelligence & Robotics (LORIA - AIS), Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), European Project: 813239,H2020-EU.1.3. - EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions / H2020-EU.1.3.1. - Fostering new skills by means of excellent initial training of researchers,10.3030/813239,RNAct(2019)

المصدر: The 31st Annual Intelligent Systems For Molecular Biology (ISMB) and the 22nd Annual European Conference on Computational Biology (ECCB) ; https://hal.science/hal-04168414 ; The 31st Annual Intelligent Systems For Molecular Biology (ISMB) and the 22nd Annual European Conference on Computational Biology (ECCB), Jul 2023, Lyon, France

مصطلحات موضوعية: Protein-RNA docking, Scoring Functions, RRM domain, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]

جغرافية الموضوع: Lyon, France

Relation: info:eu-repo/grantAgreement//813239/EU/Enabling proteins with RNA recognition motifs for synthetic biology and bio-analytics/RNAct

الاتاحة: https://hal.science/hal-04168414
https://hal.science/hal-04168414v1/document
https://hal.science/hal-04168414v1/file/ISMBECCB2023_1411_Kravchenko_poster.pdf

المؤلفون: Francis A. Acquah, Blaine H. M. Mooers

المصدر: International Journal of Molecular Sciences; Volume 24; Issue 12; Pages: 10110

مصطلحات موضوعية: RNA–drug interactions, virtual screening, RNA–ligand interactions, RNA microscale thermophoresis, computer-aided drug design, RNA drug discovery, RNA targets, trypanosome RNA editing, small molecule–RNA docking, unsupervised machine learning

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Biochemistry; https://dx.doi.org/10.3390/ijms241210110

الاتاحة: https://doi.org/10.3390/ijms241210110

المؤلفون: Sahu, Vishal Kumar, Ballav, Sangeeta, Nagar, Shuchi, Ranjan, Amit, Basu, Soumya

مصطلحات موضوعية: Drug discovery, Protein-RNA Docking, Molecular Docking

Relation: https://mirna.in/SieveAI; https://doi.org/10.5281/zenodo.10863428; https://doi.org/10.5281/zenodo.10863429; oai:zenodo.org:10863429

الاتاحة: https://doi.org/10.5281/zenodo.10863429

المؤلفون: Banciul, Rita

المساهمون: Olechnovič, Kliment, Dapkūnas, Justas

مصطلحات موضوعية: Molecular Docking, Structure Prediction, Docking Benchmarks, FTDMP, Protein-protein docking, Protein-RNA docking, Protein-DNA docking

Relation: https://doi.org/10.5281/zenodo.10517523; https://doi.org/10.5281/zenodo.10517524; oai:zenodo.org:10517524

الاتاحة: https://doi.org/10.5281/zenodo.10517524

المؤلفون: Delgado Blanco, Javier, Radusky, Leandro, Cianferoni, Damiano, Serrano Pubull, Luis, 1982-

مصطلحات موضوعية: FoldX, ModelX, RNA docking, Protein–RNA interface design, Protein–RNA interface engineering

وصف الملف: application/pdf

Relation: Proc Natl Acad Sci U S A. 2019; 116(49):24568-73; info:eu-repo/grantAgreement/ES/1PE/BFU2015-63571-P; http://hdl.handle.net/10230/44178; http://dx.doi.org/10.1073/pnas.1910999116

الاتاحة: http://hdl.handle.net/10230/44178
https://doi.org/10.1073/pnas.1910999116

المؤلفون: Dhondge, Hrishikesh

المساهمون: Computational Algorithms for Protein Structures and Interactions (CAPSID), Inria Nancy - Grand Est, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Department of Complex Systems, Artificial Intelligence & Robotics (LORIA - AIS), Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), Université de Lorraine, Marie-Dominique Devignes, Isaure Chauvot de Beauchêne

المصدر: https://theses.hal.science/tel-04219324 ; Bioinformatics [q-bio.QM]. Université de Lorraine, 2023. English. ⟨NNT : 2023LORR0103⟩.

مصطلحات موضوعية: Structural bioinformatics, Protein domain, RNA Recognition Motif (RRM), Data integration, 3D modeling, Protein-RNA docking, Bioinformatique structurale, Domaine protéique, Motif de reconnaissance de l'ARN (RRM), Intégration de données, Modélisation 3D, Amarrage protéine-ARN, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]

Relation: NNT: 2023LORR0103

الاتاحة: https://theses.hal.science/tel-04219324
https://theses.hal.science/tel-04219324v1/document
https://theses.hal.science/tel-04219324v1/file/DDOC_T_2023_0103_DHONDGE.pdf

المؤلفون: Kravchenko, Anna, Smail-Tabbone, Malika, Chauvot de Beauchene, Isaure, de Vries, Sjoerd, Jacob

المساهمون: Computational Algorithms for Protein Structures and Interactions (CAPSID), Inria Nancy - Grand Est, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Department of Complex Systems, Artificial Intelligence & Robotics (LORIA - AIS), Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)

المصدر: 35th RHINE-KNEE-REGIONAL MEETING ON STRUCTURAL BIOLOGY
https://hal.science/hal-04168604
35th RHINE-KNEE-REGIONAL MEETING ON STRUCTURAL BIOLOGY, Oct 2022, Gérardmer, France
https://imopa.cnrs.fr/en/35rd-rhine-knee-regional-meeting-on-structural-biology/#:~:text=ON%20STRUCTURAL%20BIOLOGY-,05%2D07%20OCTOBER%202022%20%E2%80%93%20GERARDMER,%20FRANCE,the%20guidance%20of%20experienced%20scientists.

مصطلحات موضوعية: Protein-RNA docking, Scoring function, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]

جغرافية الموضوع: Gérardmer, France

الاتاحة: https://hal.science/hal-04168604

المؤلفون: Luis Serrano, Damiano Cianferoni, Javier Delgado Blanco, Leandro G Radusky

المصدر: Proceedings of the National Academy of Sciences of the United States of America
Proceedings of the National Academy of Sciences

مصطلحات موضوعية: Protein Conformation, Protein design, Computational biology, protein–RNA interface engineering, 03 medical and health sciences, FoldX, Transcription (biology), protein–RNA interface design, RNA docking, Gene silencing, 030304 developmental biology, 0303 health sciences, Multidisciplinary, Binding Sites, Chemistry, 030302 biochemistry & molecular biology, RNA, Computational Biology, Proteins, RNA-Binding Proteins, Biological Sciences, Molecular Docking Simulation, Biophysics and Computational Biology, ROC Curve, Docking (molecular), RNA splicing, Target protein, Algorithms, Software, ModelX

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c6cc003907792b67a1ae5d39d8c8fefb
https://pubmed.ncbi.nlm.nih.gov/31732673

المؤلفون: Adam, Yagoub Ali Ibrahim

Thesis Advisors: Vencio, Ricardo Zorzetto Nicoliello

مصطلحات موضوعية: Anotação estrutural, Anotação funcional, Docagem de RNA, Estruturas de ncRNAs de ordem superior, Estruturas RNA, Funções de ncRNAs, Functional annotation, Halobacterium salinarum NRC-1, Higher-order ncRNAs structures, Interações de RNA, Interações de TSSaRNAs-LSm, ncRNAs functions, ncRNAs prediction, Non-coding RNA, Predição de ncRNAs, Regulação baseada em RNA, Rfam, RNA based regulation, RNA docking, RNA interactions, RNA não codificante, RNA structures, Structural annotation, TSSaRNAs, TSSaRNAs-LSm interactions

وصف الملف: application/pdf

الاتاحة: http://www.teses.usp.br/teses/disponiveis/95/95131/tde-02042019-201857/

المؤلفون: Jiang, Hanlun, Zhu, Lizhe, Héliou, Amélie, Gao, Xin, Bernauer, Julie, Huang, Xuhui

مصطلحات موضوعية: miRNA, Argonaute, Molecular recognition, Molecular dynamics, Markov state model, Protein-RNA docking

Relation: http://repository.ust.hk/ir/Record/1783.1-86516; Drug Target miRNA: Methods and Protocols / Editor: Marco F. Schmidt. New York : Humana Press, 2017, p. 251-275, Part of the Methods in Molecular Biology book series (MIMB, volume 1517); https://doi.org/10.1007/978-1-4939-6563-2_18; http://lbdiscover.ust.hk/uresolver?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rfr_id=info:sid/HKUST:SPI&rft.genre=article&rft.issn=&rft.volume=1517&rft.issue=&rft.date=2017&rft.spage=251&rft.aulast=Jiang&rft.aufirst=Hanlun%7Ceoutsider%7CuGraduate%20Program%20in%20Biological%20Physics,%20Structure%20and%20Design,%20University%20of%20Washington&rft.atitle=Elucidating%20Mechanisms%20of%20Molecular%20Recognition%20Between%20Human%20Argonaute%20and%20miRNA%20Using%20Computational%20Approaches&rft.title=Drug%20Target%20miRNA%3A%20Methods%20and%20Protocols; http://www.scopus.com/record/display.url?eid=2-s2.0-85005950477&origin=inward

الاتاحة: http://repository.ust.hk/ir/Record/1783.1-86516
https://doi.org/10.1007/978-1-4939-6563-2_18
http://lbdiscover.ust.hk/uresolver?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rfr_id=info:sid/HKUST:SPI&rft.genre=article&rft.issn=&rft.volume=1517&rft.issue=&rft.date=2017&rft.spage=251&rft.aulast=Jiang&rft.aufirst=Hanlun%7Ceoutsider%7CuGraduate%20Program%20in%20Biological%20Physics,%20Structure%20and%20Design,%20University%20of%20Washington&rft.atitle=Elucidating%20Mechanisms%20of%20Molecular%20Recognition%20Between%20Human%20Argonaute%20and%20miRNA%20Using%20Computational%20Approaches&rft.title=Drug%20Target%20miRNA%3A%20Methods%20and%20Protocols
http://www.scopus.com/record/display.url?eid=2-s2.0-85005950477&origin=inward

المؤلفون: Hanlun Jiang, Julie Bernauer, Lizhe Zhu, Xuhui Huang, Xin Gao, Amélie Héliou

المساهمون: University of Washington [Seattle], Hong Kong University of Science and Technology (HKUST), Laboratoire d'informatique de l'École polytechnique [Palaiseau] (LIX), École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS), Algorithms and Models for Integrative Biology (AMIB ), École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire de Recherche en Informatique (LRI), Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), King Abdullah University of Science and Technology (KAUST), Centre National de la Recherche Scientifique (CNRS)-École polytechnique (X), Centre National de la Recherche Scientifique (CNRS)-École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)-École polytechnique (X)-Laboratoire de Recherche en Informatique (LRI)

المصدر: Drug Target miRNA: Methods and Protocols
Drug Target miRNA: Methods and Protocols, pp.251--275, 2016, 978-1-4939-6563-2. ⟨10.1007/978-1-4939-6563-2_18⟩
Methods in Molecular Biology ISBN: 9781493965618

مصطلحات موضوعية: 0301 basic medicine, Regulation of gene expression, State model, [SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology, Computational biology, Argonaute, Biology, Molecular dynamics, Protein-RNA docking, Bioinformatics, Combined approach, 03 medical and health sciences, 030104 developmental biology, Molecular recognition, Markov state model, Docking (molecular), microRNA, Gene silencing, miRNA

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9d511958f87f492620dc0e5dafa7f01d
https://inria.hal.science/hal-01569854

المؤلفون: Molecule Complexes

المساهمون: The Pennsylvania State University CiteSeerX Archives

المصدر: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2685511/pdf/1219.pdf.

مصطلحات موضوعية: scoring functions, structure-based drug design, RNA DOCKing, bindi

وصف الملف: application/pdf

Relation: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.689.3901; http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2685511/pdf/1219.pdf

الاتاحة: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.689.3901
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2685511/pdf/1219.pdf

المؤلفون: Adam, Yagoub Ali Ibrahim

المساهمون: Vencio, Ricardo Zorzetto Nicoliello

مصطلحات موضوعية: Anotação estrutural, Regulação baseada em RNA, Predição de ncRNAs, RNA não codificante, Interações de TSSaRNAs-LSm, Interações de RNA, Rfam, Halobacterium salinarum NRC-1, Estruturas de ncRNAs de ordem superior, TSSaRNAs, Funções de ncRNAs, Estruturas RNA, Anotação funcional, Docagem de RNA, RNA docking, RNA interactions, RNA structures, Structural annotation, RNA based regulation, Non-coding RNA, ncRNAs prediction, ncRNAs functions, Higher-order ncRNAs structures, Functional annotation, TSSaRNAs-LSm interactions

وصف الملف: application/pdf

Relation: http://www.teses.usp.br/teses/disponiveis/95/95131/tde-02042019-201857/

الاتاحة: http://www.teses.usp.br/teses/disponiveis/95/95131/tde-02042019-201857/
https://doi.org/10.11606/T.95.2019.tde-02042019-201857