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1Academic Journal
المؤلفون: Ilona C. Unarta, Siqin Cao, Eshani C. Goonetilleke, Jiani Niu, Samuel H. Gellman, Xuhui Huang
مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Biotechnology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, performed accumulated 564, despite recent advances, within living cells, scaffold rna oligomer, scaffold rna compared, six arg residues, regulating peptide diffusion, model condensates formed, atom molecular dynamics, asymmetric dimethyl arginine, rich peptide diffused, two guest peptides, scaffold peptide rich, scaffold rna, scaffold peptide, guest peptide, rich peptide, rna backbone, molecules within, driven diffusion, rich peptides
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2Academic Journal
المؤلفون: Jaswinder Singh (270273), Kuldip Paliwal (10879246), Jaspreet Singh (533281), Yaoqi Zhou (9859)
مصطلحات موضوعية: Biophysics, Biochemistry, Molecular Biology, Plant Biology, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, Information Systems not elsewhere classified, test sets range, pairwise angle distributions, RNA structure prediction, model quality indicators, method, Pseudotorsion Angle Prediction, protein structure prediction, restraint, SPOT-RNA -1D, RNA Backbone Torsion, Dilated Convolutional Neural Networ.
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3Academic Journal
المؤلفون: Zhengyue Zhang (8710215), Jennifer Vögele (10009397), Klaudia Mráziková (9665708), Holger Kruse (1512832), Xiaohui Cang (1280034), Jens Wöhnert (2030179), Miroslav Krepl (1464313), Jiří Šponer (1274424)
مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Genetics, Evolutionary Biology, Infectious Diseases, Virology, Computational Biology, Chemical Sciences not elsewhere classified, induction components, RNA backbone, H-bond interaction, van der Waals sulfur parameters, potassium binding site, QM calculations, PT interactions, RNA structure, sulfur atom, signature interactions, Molecular Dynamics Simulations, PT modifications, U-turn motif, NMR spectroscopy measurements, RNA phosphates, MD, neomycin-sensing riboswitch, Phosphorothioate Substitutions, sulfur substitution, chemical modifications, RNA stability
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4Academic Journal
المؤلفون: Gang-Shun Yi, Wei-Wei Wang, Wei-Guo Cao, Feng-Ping Wang, Xi-Peng Liu
المصدر: Genes; Volume 8; Issue 1; Pages: 38
مصطلحات موضوعية: S. acidocaldarius, uracil-DNA glycosylase, [4Fe-4S] cluster, RNA backbone
جغرافية الموضوع: agris
وصف الملف: application/pdf
Relation: Molecular Genetics and Genomics; https://dx.doi.org/10.3390/genes8010038
الاتاحة: https://doi.org/10.3390/genes8010038
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5Dissertation/ Thesis
المؤلفون: Murray, Laura Weston
Thesis Advisors: Richardson, Jane S, Richardson, David C
مصطلحات موضوعية: Biophysics, General, Biology, Bioinformatics, Chemistry, Biochemistry, RNA, RNA backbone, rotamers, base, phosphate perpendiculars, conformers, RNA structure
وصف الملف: 17902885 bytes; application/pdf
الاتاحة: http://hdl.handle.net/10161/382
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6
المؤلفون: David S. Richardson, Jane S. Richardson, David S. Goodsell
المصدر: The Journal of Biological Chemistry
مصطلحات موضوعية: Models, Molecular, 0301 basic medicine, Computer science, Protein Data Bank (RCSB PDB), 1sns, 1LpL, Four-character codes starting with a number are accession codes at the PDB archive, we use lower-case except for L, to avoid ambiguity in any font, wwPDB, worldwide PDB, including RCSB, PDBe, PDBj, BMRB, and EMDB, Biochemistry, Molecular graphics, Cα, Alpha carbon atoms in a protein chain, Kinemage, protein folding, structural biology, molecular graphics, RNA structure, all-atom contacts, Databases, Protein, Frodo, widely used, early model-to-map graphics on laboratory-accessible hardware, SOD, Cu,Zn superoxide dismutase, Cu-Zn Superoxide Dismutase, H, hydrogen atom (as in H-bond), Disulfide bond, RCSB, Research Collaboratory for Structural Biology, US branch of the wwPDB, ORTEP, Oak Ridge Thermal Ellipsoid Plot, a small-molecule line graphics system for drawing the ellipsoids of anisotropic temperature factors at each atom, computer.file_format, Suite, the sugar-to-sugar, rather than nucleotide, parsing of RNA backbone (the Richardsons' best published pun), CaBLAM, Cα-Based Low-resolution Annotation Method that uses peptide CO orientations to diagnose incorrect backbone conformations even if Ramachandran φ,ψ values are restrained, KiNG, Kinemage Next Generation, in Java, by Ian Davis and Vincent Chen, Mage, Dave's original program, in C, to display kinemage graphics, SS bond, disulfide bond, RDC, Residual dipolar coupling measurement of atom–atom orientation, by NMR, ribbon drawings, science education and outreach, History, 21st Century, PDB, Protein Data Bank, for experimental structures of macromolecules, 03 medical and health sciences, vdW, van der Waals, PS300, or MPS, Evans & Sutherland calligraphic (vector-drawn) display workstation, Humans, protein structure, Molecular Biology, visualization, X-ray crystallography, NOE, Nuclear Overhauser effect measurement of atom–atom distance, by NMR, 030102 biochemistry & molecular biology, JBC Reviews, GRIP-75, the first model-to-map molecular graphics system, at UNC Chapel Hill, 3D, three-dimensional, AED, Advanced Electronic Design, Cell Biology, History, 20th Century, Protein Data Bank, Data science, Visualization, Kinemage, a file using Dave Richardson's format for interactive molecular graphics, 030104 developmental biology, Structural biology, TIM, triose phosphate isomerase, computer
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7
المؤلفون: Xipeng Liu, Fengping Wang, Gang-Shun Yi, Wei-Guo Cao, Wei-Wei Wang
المصدر: Genes, Vol 8, Iss 1, p 38 (2017)
Genes; Volume 8; Issue 1; Pages: 38
Genesمصطلحات موضوعية: 0301 basic medicine, Sulfolobus acidocaldarius, chemistry.chemical_classification, RNA backbone, lcsh:QH426-470, Uracil, Glycosidic bond, Article, S. acidocaldarius, uracil-DNA glycosylase, [4Fe-4S] cluster, 03 medical and health sciences, chemistry.chemical_compound, lcsh:Genetics, 030104 developmental biology, Deoxyribose, chemistry, Biochemistry, DNA glycosylase, Uracil-DNA glycosylase, Ribose, Genetics, Genetics (clinical), DNA
وصف الملف: application/pdf
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8Academic Journal
المؤلفون: Jain, Swati, Richardson, David C, Richardson, Jane S
مصطلحات موضوعية: Clash correction, ERRASER, MolProbity, PHENIX, RNA backbone conformers, RNA crystallography, Ribose pucker, wwPDB validation, Computational Biology, Crystallization, Crystallography, X-Ray, Data Interpretation, Statistical, Humans, Hydrogen Bonding, Models, Molecular, Nucleic Acid Conformation, RNA, RNA Folding, Ribostamycin, Software
جغرافية الموضوع: United States
وصف الملف: application/pdf
Relation: Methods Enzymol; http://www.ncbi.nlm.nih.gov/pubmed/26068742; S0076-6879(15)00020-8; https://hdl.handle.net/10161/10807
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9Academic Journal
المؤلفون: Wang, Xueyi, Kapral, Gary, Murray, Laura, Richardson, David, Richardson, Jane, Snoeyink, Jack
المصدر: Journal of Mathematical Biology, 56(43102)
مصطلحات موضوعية: RNA backbone adjustment, All-atom contacts, RNA crystallography, S-motifs, 92E10, Steric clash, Kinematic chain, Automated rebuilding, Structure validation, RNA backbone conformation
Time: 92-04
Relation: https://doi.org/10.17615/7e3c-mv82; https://cdr.lib.unc.edu/downloads/6d5704434?file=thumbnail; https://cdr.lib.unc.edu/downloads/6d5704434
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10
المؤلفون: Anna Marie Pyle, Elisabeth Humphris-Narayanan
المصدر: Journal of molecular biology. 421(1)
مصطلحات موضوعية: Models, Molecular, RNA Folding, Computational biology, Biology, 010402 general chemistry, 01 natural sciences, Article, 03 medical and health sciences, Structural Biology, RNA backbone conformation, Genomic library, Nucleotide, Nucleic acid structure, RNA structure, RNA fragment library, Molecular Biology, 030304 developmental biology, Gene Library, chemistry.chemical_classification, 0303 health sciences, Nucleic acid tertiary structure, Nucleotides, RNA Conformation, RNA, RNA modeling, Combinatorial chemistry, 0104 chemical sciences, chemistry, Nucleic Acid Conformation, Model quality, Rna folding