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المؤلفون: David S. Richardson, Jane S. Richardson, David S. Goodsell
المصدر: The Journal of Biological Chemistry
مصطلحات موضوعية: Models, Molecular, 0301 basic medicine, Computer science, Protein Data Bank (RCSB PDB), 1sns, 1LpL, Four-character codes starting with a number are accession codes at the PDB archive, we use lower-case except for L, to avoid ambiguity in any font, wwPDB, worldwide PDB, including RCSB, PDBe, PDBj, BMRB, and EMDB, Biochemistry, Molecular graphics, Cα, Alpha carbon atoms in a protein chain, Kinemage, protein folding, structural biology, molecular graphics, RNA structure, all-atom contacts, Databases, Protein, Frodo, widely used, early model-to-map graphics on laboratory-accessible hardware, SOD, Cu,Zn superoxide dismutase, Cu-Zn Superoxide Dismutase, H, hydrogen atom (as in H-bond), Disulfide bond, RCSB, Research Collaboratory for Structural Biology, US branch of the wwPDB, ORTEP, Oak Ridge Thermal Ellipsoid Plot, a small-molecule line graphics system for drawing the ellipsoids of anisotropic temperature factors at each atom, computer.file_format, Suite, the sugar-to-sugar, rather than nucleotide, parsing of RNA backbone (the Richardsons' best published pun), CaBLAM, Cα-Based Low-resolution Annotation Method that uses peptide CO orientations to diagnose incorrect backbone conformations even if Ramachandran φ,ψ values are restrained, KiNG, Kinemage Next Generation, in Java, by Ian Davis and Vincent Chen, Mage, Dave's original program, in C, to display kinemage graphics, SS bond, disulfide bond, RDC, Residual dipolar coupling measurement of atom–atom orientation, by NMR, ribbon drawings, science education and outreach, History, 21st Century, PDB, Protein Data Bank, for experimental structures of macromolecules, 03 medical and health sciences, vdW, van der Waals, PS300, or MPS, Evans & Sutherland calligraphic (vector-drawn) display workstation, Humans, protein structure, Molecular Biology, visualization, X-ray crystallography, NOE, Nuclear Overhauser effect measurement of atom–atom distance, by NMR, 030102 biochemistry & molecular biology, JBC Reviews, GRIP-75, the first model-to-map molecular graphics system, at UNC Chapel Hill, 3D, three-dimensional, AED, Advanced Electronic Design, Cell Biology, History, 20th Century, Protein Data Bank, Data science, Visualization, Kinemage, a file using Dave Richardson's format for interactive molecular graphics, 030104 developmental biology, Structural biology, TIM, triose phosphate isomerase, computer
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المؤلفون: Kathleen G. Valentine, Cecilia Tommos, Veronica R. Moorman, Kathryn L. Sarachan, A. Joshua Wand, John M. Gledhill, Kushol Gupta, Matthew Bernens, Gregory D. Van Duyne
المصدر: Biochemical Journal
مصطلحات موضوعية: Models, Molecular, animal diseases, PRE, paramagnetic relaxation enhancement, Plasma protein binding, Biochemistry, RMSD, root mean square deviation, 0302 clinical medicine, X-Ray Diffraction, SMN complex, GST, glutathione transferase, MTSL, S-(2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl methanesulfonothioate, spinal muscular atrophy, small nuclear ribonucleoprotein (snRNP) assembly, 0303 health sciences, Protein Stability, Gemin2, SAXS, small-angle X-ray scattering, SMN Complex Proteins, Recombinant Proteins, 3. Good health, Survival of Motor Neuron 2 Protein, Hydrophobic and Hydrophilic Interactions, Research Article, Molecular Sequence Data, Biology, HSQC, heteronuclear single-quantum coherence, 03 medical and health sciences, Scattering, Small Angle, snRNA, small nuclear RNA, Humans, Protein Interaction Domains and Motifs, snRNP, Amino Acid Sequence, NOE, nuclear Overhauser effect, RDC, residual dipolar coupling, Nuclear Magnetic Resonance, Biomolecular, Molecular Biology, APS, Advanced Photon Source, 030304 developmental biology, SnRNP Biogenesis, survival of motor neuron (SMN), Sequence Homology, Amino Acid, NP40, Nonidet P40, snRNP, small nuclear ribonucleoprotein, Survival of motor neuron, Cell Biology, SMN, survival of motor neuron, Survival of Motor Neuron 1 Protein, nervous system diseases, Amino Acid Substitution, SMA, spinal muscular atrophy, nervous system, DTT, dithiothreitol, Multiprotein Complexes, Mutagenesis, Site-Directed, CHESS, Cornell High Energy Synchrotron Source, SMN-Gemin2 complex, 030217 neurology & neurosurgery, Small nuclear RNA
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المصدر: Carbohydrate Research
مصطلحات موضوعية: DSS, dimethyl-2-silapentane-5-sulfonate, HA, hyaluronan, Magnetic Resonance Spectroscopy, Spectral resolution, Molecular Sequence Data, Oligosaccharides, GlcNAc, N-acetyl-d-glucosamine, TOCSY, total correlation spectroscopy, Biochemistry, Analytical Chemistry, Nuclear magnetic resonance, TROSY, transverse relaxation-optimized spectroscopy, HSQC, heteronuclear single quantum correlation, Dispersion (optics), Hyaluronic Acid, RDC, residual dipolar coupling, Hyaluronan, ComputingMethodologies_COMPUTERGRAPHICS, Strong coupling, Molecular Structure, Chemistry, Resolution (electron density), Organic Chemistry, Reproducibility of Results, Resonance, General Medicine, Nuclear magnetic resonance spectroscopy, Resonance overlap, NMR spectra database, Carbohydrate Sequence, Structural biology, DQF-COSY, double quantum-filtered correlation spectroscopy, ROE, rotating frame NOE, NOE, nuclear Overhauser enhancement, FT, Fourier transformation, T2 relaxation, FID, free induction decay, GlcA, d-glucuronic acid, Rapid Communication, SH2, Src homology 2, Heteronuclear single quantum coherence spectroscopy
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المؤلفون: Steve W. Homans, Antonio Hernández Daranas, Agnieszka K. Bronowska, Christopher A. MacRaild
المصدر: Digital.CSIC. Repositorio Institucional del CSIC
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Journal of Molecular Biologyمصطلحات موضوعية: Models, Molecular, Entropy, Plasma protein binding, Molecular dynamics, Article, Motion, Molecular recognition, Protein structure, Structural Biology, Periplasmic binding protein, Computer Simulation, Binding site, RDC, residual dipolar coupling, Nuclear Magnetic Resonance, Biomolecular, Molecular Biology, Ligand binding, Binding Sites, Chemistry, Escherichia coli Proteins, Protein dynamics, Binding protein, Galactose, HSQC, heteronuclear single quantum coherence, Ligand (biochemistry), Protein Structure, Tertiary, ABP, arabinose-binding protein, Biochemistry, NMR relaxation, Biophysics, Thermodynamics, Carrier Proteins, Protein Binding