المؤلفون: Biggs, Bradley W, Price, Morgan N, Lai, Dexter, Escobedo, Jasmine, Fortanel, Yuridia, Huang, Yolanda Y, Kim, Kyoungmin, Trotter, Valentine V, Kuehl, Jennifer V, Lui, Lauren M, Chakraborty, Romy, Deutschbauer, Adam M, Arkin, Adam P

المصدر: Molecular Systems Biology. 20(11)

مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Genetics, Human Genome, Biotechnology, Escherichia coli, Gene Library, DNA Barcoding, Taxonomic, Bacillus subtilis, Bacterial Proteins, Genetic Complementation Test, High-Throughput Nucleotide Sequencing, Escherichia coli Proteins, DNA Barcoding, Functional Genomics, High-throughput Characterization, Protein Annotation, Biochemistry and Cell Biology, Other Biological Sciences, Bioinformatics, Biochemistry and cell biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/9bp0j97j
https://escholarship.org/content/qt9bp0j97j/qt9bp0j97j.pdf

المؤلفون: Bradley W Biggs, Morgan N Price, Dexter Lai, Jasmine Escobedo, Yuridia Fortanel, Yolanda Y Huang, Kyoungmin Kim, Valentine V Trotter, Jennifer V Kuehl, Lauren M Lui, Romy Chakraborty, Adam M Deutschbauer, Adam P Arkin

المصدر: Molecular Systems Biology, Vol 20, Iss 11, Pp 1207-1229 (2024)

مصطلحات موضوعية: DNA Barcoding, Functional Genomics, High-throughput Characterization, Protein Annotation, Biology (General), QH301-705.5, Medicine (General), R5-920

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1744-4292

URL الوصول: https://doaj.org/article/be2f0052335c41e5b844bbca96e0a1aa

المؤلفون: Neri, Uri, Wolf, Yuri I, Roux, Simon, Camargo, Antonio Pedro, Lee, Benjamin, Kazlauskas, Darius, Chen, I Min, Ivanova, Natalia, Allen, Lisa Zeigler, Paez-Espino, David, Bryant, Donald A, Bhaya, Devaki, Consortium, RNA Virus Discovery, Narrowe, Adrienne B, Probst, Alexander J, Sczyrba, Alexander, Kohler, Annegret, Séguin, Armand, Shade, Ashley, Campbell, Barbara J, Lindahl, Björn D, Reese, Brandi Kiel, Roque, Breanna M, DeRito, Chris, Averill, Colin, Cullen, Daniel, Beck, David AC, Walsh, David A, Ward, David M, Wu, Dongying, Eloe-Fadrosh, Emiley, Brodie, Eoin L, Young, Erica B, Lilleskov, Erik A, Castillo, Federico J, Martin, Francis M, LeCleir, Gary R, Attwood, Graeme T, Cadillo-Quiroz, Hinsby, Simon, Holly M, Hewson, Ian, Grigoriev, Igor V, Tiedje, James M, Jansson, Janet K, Lee, Janey, VanderGheynst, Jean S, Dangl, Jeff, Bowman, Jeff S, Blanchard, Jeffrey L, Bowen, Jennifer L, Xu, Jiangbing, Banfield, Jillian F, Deming, Jody W, Kostka, Joel E, Gladden, John M, Rapp, Josephine Z, Sharpe, Joshua, McMahon, Katherine D, Treseder, Kathleen K, Bidle, Kay D, Wrighton, Kelly C, Thamatrakoln, Kimberlee, Nusslein, Klaus, Meredith, Laura K, Ramirez, Lucia, Buee, Marc, Huntemann, Marcel, Kalyuzhnaya, Marina G, Waldrop, Mark P, Sullivan, Matthew B, Schrenk, Matthew O, Hess, Matthias, Vega, Michael A, O’Malley, Michelle A, Medina, Monica, Gilbert, Naomi E, Delherbe, Nathalie, Mason, Olivia U, Dijkstra, Paul, Chuckran, Peter F, Baldrian, Petr, Constant, Philippe, Stepanauskas, Ramunas, Daly, Rebecca A, Lamendella, Regina, Gruninger, Robert J, McKay, Robert M, Hylander, Samuel, Lebeis, Sarah L, Esser, Sarah P, Acinas, Silvia G, Wilhelm, Steven S, Singer, Steven W, Tringe, Susannah S, Woyke, Tanja, Reddy, TBK, Bell, Terrence H, Mock, Thomas, McAllister, Tim, Thiel, Vera

المصدر: Cell. 185(21)

مصطلحات موضوعية: Microbiology, Biological Sciences, Bioinformatics and Computational Biology, Infectious Diseases, Genetics, Biotechnology, Microbiome, Infection, Bacteriophages, DNA-Directed RNA Polymerases, Genome, Viral, Phylogeny, RNA, RNA Viruses, RNA-Dependent RNA Polymerase, Virome, RNA Virus Discovery Consortium, Bactriophage, Functional protein annotation, Metatranscriptomics, RNA Virus, RNA dependent RNA polymerase, Viral Ecology, Virus, Virus - Host prediction, viral phylogeny, Medical and Health Sciences, Developmental Biology, Biological sciences, Biomedical and clinical sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/6d60q36g
https://escholarship.org/content/qt6d60q36g/qt6d60q36g.pdf

المؤلفون: Tripathi, Ankur^{1, 1}, Roy, Nabarun²

المصدر: International Journal of Bio-resource and Stress Management 14(9):1295-1304. 2023

المؤلفون: Hussain A. Safar, Fatemah Alatar, Abu Salim Mustafa

المصدر: Microorganisms, Vol 12, Iss 2, p 247 (2024)

مصطلحات موضوعية: eukaryotes, ONT, read correction, gene detection, protein annotation, Biology (General), QH301-705.5

Relation: https://www.mdpi.com/2076-2607/12/2/247; https://doaj.org/toc/2076-2607; https://doaj.org/article/38ab09f4ec854a3191b3dc3765db294c

الاتاحة: https://doi.org/10.3390/microorganisms12020247
https://doaj.org/article/38ab09f4ec854a3191b3dc3765db294c

المؤلفون: Yuanting Zheng, Neil D. Young, Jiangning Song, Bill C.H. Chang, Robin B. Gasser

المصدر: Computational and Structural Biotechnology Journal, Vol 21, Iss , Pp 2696-2704 (2023)

مصطلحات موضوعية: Informatics, Machine learning, Protein annotation, Genome, Proteome, Haemonchus contortus, Biotechnology, TP248.13-248.65

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2001037023001289; https://doaj.org/toc/2001-0370

URL الوصول: https://doaj.org/article/ccdc5f8da4c8460187bc56cc191908fe

المؤلفون: Kress, Arnaud, Poch, Olivier, Lecompte, Odile, Thompson, Julie, D.

المساهمون: Laboratoire des sciences de l'ingénieur, de l'informatique et de l'imagerie (ICube), École Nationale du Génie de l'Eau et de l'Environnement de Strasbourg (ENGEES)-Université de Strasbourg (UNISTRA)-Institut National des Sciences Appliquées - Strasbourg (INSA Strasbourg), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Les Hôpitaux Universitaires de Strasbourg (HUS)-Centre National de la Recherche Scientifique (CNRS)-Matériaux et Nanosciences Grand-Est (MNGE), Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS)-Réseau nanophotonique et optique, Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS), Institut de Planétologie et d'Astrophysique de Grenoble (IPAG), Centre National d'Études Spatiales Toulouse (CNES)-Observatoire des Sciences de l'Univers de Grenoble (OSUG ), Institut national des sciences de l'Univers (INSU - CNRS)-Université Savoie Mont Blanc (USMB Université de Savoie Université de Chambéry )-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université Grenoble Alpes (UGA)-Météo-France-Institut national des sciences de l'Univers (INSU - CNRS)-Université Savoie Mont Blanc (USMB Université de Savoie Université de Chambéry )-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université Grenoble Alpes (UGA)-Météo-France, ANR-21-CE02-0028,GEODE,Evolution des génomes chez les Décapodes(2021)

المصدر: EISSN: 2673-7647 ; Frontiers in Bioinformatics ; https://cnrs.hal.science/hal-04253816 ; Frontiers in Bioinformatics, 2023, 3, pp.1178926. ⟨10.3389/fbinf.2023.1178926⟩

مصطلحات موضوعية: molecular evolution, protein domain, protein annotation, protein sequence homology, sequence analysis, annotation errors, primates, fungi, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]

Relation: hal-04253816; https://cnrs.hal.science/hal-04253816; https://cnrs.hal.science/hal-04253816/document; https://cnrs.hal.science/hal-04253816/file/Frontiers_main_text.pdf

الاتاحة: https://cnrs.hal.science/hal-04253816
https://cnrs.hal.science/hal-04253816/document
https://cnrs.hal.science/hal-04253816/file/Frontiers_main_text.pdf
https://doi.org/10.3389/fbinf.2023.1178926

المؤلفون: Yuko Tsuchiya, Tomoki Yonezawa, Yu Yamamori, Hiroko Inoura, Masanori Osawa, Kazuyoshi Ikeda, Kentaro Tomii

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Genetics, Molecular Biology, Pharmacology, Developmental Biology, Marine Biology, Cancer, Hematology, Computational Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, receptor diversity among, https :// possum, approved drug compound, possum drug search, drug discovery, drug candidates, approved drugs, possum v, possum /), developed possum, protein annotation, pharmaceutical research, major expansion, latest release, investigating ligand, including comparisons, facilitate biomedical

Relation: https://figshare.com/articles/journal_contribution/PoSSuM_v_3_A_Major_Expansion_of_the_PoSSuM_Database_for_Finding_Similar_Binding_Sites_of_Proteins/24654268

الاتاحة: https://doi.org/10.1021/acs.jcim.3c01405.s001
https://figshare.com/articles/journal_contribution/PoSSuM_v_3_A_Major_Expansion_of_the_PoSSuM_Database_for_Finding_Similar_Binding_Sites_of_Proteins/24654268

المؤلفون: Spiers, Andrew J., Dorfmueller, Helge C., Jerdan, Robyn, McGregor, Jessica, Nicoll, Abbie, Steel, Kenzie, Cameron, Scott

المصدر: Spiers , A J , Dorfmueller , H C , Jerdan , R , McGregor , J , Nicoll , A , Steel , K & Cameron , S 2023 , ' Bioinformatics characterization of BcsA-like orphan proteins suggest they form a novel family of pseudomonad cyclic-β-glucan synthases ' , PLoS One , vol. 18 , no. 6 , e0286540 . https://doi.org/10.1371/journal.pone.0286540

مصطلحات موضوعية: GH17 glycosyl hydrolase, GT2 glucan synthase, Pseudomonas, Protein annotation, Structural prediction, Modelling

وصف الملف: application/pdf

الاتاحة: https://rke.abertay.ac.uk/en/publications/73a884ad-82e4-43f1-9bb0-fd1988ea99d4
https://doi.org/10.1371/journal.pone.0286540
https://rke.abertay.ac.uk/ws/files/62149049/Spiers_BioinformaticsCharacterizationOfBcsA_LikeOrphanProteins_Published_2023.pdf

المؤلفون: Naoki Watanabe, Yuki Kuriya, Masahiro Murata, Masaki Yamamoto, Masayuki Shimizu, Michihiro Araki

المصدر: Biology; Volume 12; Issue 6; Pages: 795

مصطلحات موضوعية: deep learning, protein feature, feature extraction, explainable artificial intelligence, integrated gradients, protein annotation

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Bioinformatics; https://dx.doi.org/10.3390/biology12060795

الاتاحة: https://doi.org/10.3390/biology12060795

المؤلفون: Cristina Moraru

المصدر: Viruses; Volume 15; Issue 4; Pages: 1007

مصطلحات موضوعية: VirClust, virus genome clustering, virus protein clustering, virus protein annotation, virus classification, phage classification, core proteins, shared viral proteins

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Bacterial Viruses; https://dx.doi.org/10.3390/v15041007

الاتاحة: https://doi.org/10.3390/v15041007

المؤلفون: Chau Tran, Siddharth Khadkikar, Aleksey Porollo

المصدر: International Journal of Molecular Sciences; Volume 24; Issue 4; Pages: 3775

مصطلحات موضوعية: deep learning, natural language processing, protein annotation, protein language model, protein sequence embedding, survey of embedding models

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Molecular Informatics; https://dx.doi.org/10.3390/ijms24043775

الاتاحة: https://doi.org/10.3390/ijms24043775

المؤلفون: Mitra Vajjala, Brady Johnson, Lauren Kasparek, Michael Leuze, Qiuming Yao

المصدر: Frontiers in Genetics, Vol 13 (2022)

مصطلحات موضوعية: bacterial peptide, machine learning, metagenomics, protein annotation, protein clustering, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2022.935351/full; https://doaj.org/toc/1664-8021

URL الوصول: https://doaj.org/article/f8d7437afba248e5ababbbbfb9524170

المؤلفون: Carlos A. Ruiz-Perez, Roth E. Conrad, Konstantinos T. Konstantinidis

المصدر: BMC Bioinformatics, Vol 22, Iss 1, Pp 1-16 (2021)

مصطلحات موضوعية: Genome annotation, Comparative genomics, Protein annotation, Metabolic potential, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1471-2105

URL الوصول: https://doaj.org/article/ddefa9d116b346fb942b542b03141727

المؤلفون: Kayla K. Pennerman, Guohua Yin, Anthony E. Glenn, Joan W. Bennett

المصدر: BMC Microbiology, Vol 20, Iss 1, Pp 1-11 (2020)

مصطلحات موضوعية: Aspergillus, Comparative gene annotation, Comparative protein annotation, Hexokinase, Pathogenicity factors, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s12866-020-02031-y; https://doaj.org/toc/1471-2180

URL الوصول: https://doaj.org/article/8774eeba92874bc88e6860e07e504287

المؤلفون: Arli Aditya Parikesit, David Agustriawan, Rizky Nurdiansyah

المصدر: Makara Journal of Science, Vol 24, Iss 2, Pp 101-111 (2020)

مصطلحات موضوعية: breast cancer, breast-cancer-related protein, machine learning, protein annotation, sequence analysis, Science (General), Q1-390

وصف الملف: electronic resource

Relation: https://scholarhub.ui.ac.id/cgi/viewcontent.cgi?article=1189&context=science; https://doaj.org/toc/2339-1995; https://doaj.org/toc/2356-0851

URL الوصول: https://doaj.org/article/4238c1191fa24dc7aae2abf801b53319

المؤلفون: Rembeza, Elzbieta, 1990

مصطلحات موضوعية: high-throughput-screening, protein annotation, enzyme discovery, enzyme sequence space, oxidases

وصف الملف: electronic

URL الوصول: https://research.chalmers.se/publication/527566
https://research.chalmers.se/publication/527566/file/527566_Fulltext.pdf

المؤلفون: Jin Tao, Kelly A. Brayton, Shira L. Broschat

المصدر: Frontiers in Bioinformatics, Vol 1 (2021)

مصطلحات موضوعية: protein annotation, machine learning, natural language processing, homologous clusters, network science, web application, Computer applications to medicine. Medical informatics, R858-859.7

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fbinf.2021.749008/full; https://doaj.org/toc/2673-7647

URL الوصول: https://doaj.org/article/4a99052730314adeaede8df651ddd026

المؤلفون: Catherine Mathé, Christophe Dunand

المصدر: Frontiers in Genetics, Vol 12 (2021)

مصطلحات موضوعية: protein annotation, gene prediction, gene family, mis-prediction, mis-annotation, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2021.697477/full; https://doaj.org/toc/1664-8021

URL الوصول: https://doaj.org/article/c0cd8804add844b7926ad6cbb5d7347b

المؤلفون: Marziyeh Anari, Andreas J. Stroehlein, Ross S. Hall, Bill C. H. Chang, Robin B. Gasser, Neil D. Young

المصدر: Parasites & Vectors, Vol 13, Iss 1, Pp 1-10 (2020)

مصطلحات موضوعية: Clonorchis sinensis, Comparative genomics, Niemann-pick type C2, NPC2, Functional protein annotation, Adaptation, Infectious and parasitic diseases, RC109-216

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1756-3305

URL الوصول: https://doaj.org/article/c32648340e03433989dc8f6165e7174b