المؤلفون: Bidhya Thapa (14298985), Narayan P. Adhikari (14298988), Purushottam B. Tiwari (4471393), Prem P. Chapagain (1514950)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Molecular Biology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, meecad sequences show, detailed structural investigations, despite previous studies, core region enhances, core mcpg site, core mcgmcg site, c2h2 zinc finger, based computational approaches, 5 ′- flanking, downstream transcription outcomes, used molecular modeling, transcription regulation process, methylated cpg sites, meecad sequence compared, dna methylation signal, methylation signal, methylated sites, transcription factors, molecular mechanism, molecular dynamics, methylated dna, still lacking, stable complex

Relation: https://figshare.com/articles/journal_contribution/A_5_-Flanking_C_G_Pair_at_the_Core_Region_Enhances_the_Recognition_and_Binding_of_Kaiso_to_Methylated_DNA/21777382

الاتاحة: https://doi.org/10.1021/acs.jcim.2c01294.s001

المؤلفون: Srijit Mukherjee (9415672), Premashis Manna (1598512), Nancy Douglas (9415675), Prem P. Chapagain (1514950), Ralph Jimenez (1372740)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Biotechnology, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, provide physical insights, i197r mutation leads, fold higher brightness, closely related variants, recently developed mcherry, conserved residues r95, chromophore electronic structure, mcherry variants, fluorescence brightness, two fps, simulations revealed, significant decrease, shed light, residue 161, previously shown, positions 59, observed photophysics, increased rigidity, four mutations, flexible region, first study, experimental results

Relation: https://figshare.com/articles/journal_contribution/Conformational_Dynamics_of_mCherry_Variants_A_Link_between_Side-Chain_Motions_and_Fluorescence_Brightness/21785359

الاتاحة: https://doi.org/10.1021/acs.jpcb.2c05584.s001

المؤلفون: Popular Pandey (3394112), Nisha Bhattarai (6161816), Linjia Su (7912187), Xuewen Wang (1900867), Fenfei Leng (761321), Bernard Gerstman (11983554), Prem P. Chapagain (1514950), Jin He (341320)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Biotechnology, Cancer, Inorganic Chemistry, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, transient collision event, synthetic spherical nanoparticles, impedance voltage meter, entity electrochemistry techniques, different ph values, finite element method, resolved potential change, also successfully probed, surface charge variations, surface charge heterogeneity, charge polarity variations, weight proteins less, simple potentiometric method, intrinsic protein dynamics, molecular dynamic simulations, detecting individual proteins, potentiometric method, potential probe, dynamic interactions, also called

Relation: https://figshare.com/articles/journal_contribution/Detecting_Individual_Proteins_and_Their_Surface_Charge_Variations_in_Solution_by_the_Potentiometric_Nanoimpact_Method/18857478

الاتاحة: https://doi.org/10.1021/acssensors.1c02385.s001

المؤلفون: Rudramani Pokhrel (4993223), Nisha Bhattarai (6161816), Prabin Baral (7506650), Bernard S. Gerstman (1514947), Jae H. Park (43432), Martin Handfield (88537), Prem P. Chapagain (1514950)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Pharmacology, Space Science, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, cell wall synthesis, forming water channels, antibacterial resistant infections, lipid ii molecules, recent years due, five peptides investigated, various antimicrobial lanthipeptides, mu1140 ), gallidermin, lipid ii binding, lipid ii, five lanthipeptides, whereas gallidermin, water channel, resistant strains, lantibiotic peptides, antimicrobial research, novel lanthipeptides, widespread use, use atomic, unique modes, transmembrane properties, strategic placement

Relation: https://figshare.com/articles/journal_contribution/Lipid_II_Binding_and_Transmembrane_Properties_of_Various_Antimicrobial_Lanthipeptides/17136700

الاتاحة: https://doi.org/10.1021/acs.jctc.1c00666.s001

المؤلفون: Nisha Bhattarai (6161816), Prabin Baral (7506650), Bernard S. Gerstman (1514947), Prem P. Chapagain (1514950)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Molecular Biology, Immunology, Cancer, Infectious Diseases, Virology, Computational Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, B .1.351 variant, WT, SARS-CoV, variants B .1.1.7, host receptor ACE 2, virus spike protein receptor bindin., mutation, Y.V, million, Spike Protein RBD, infectivity, RBD loop segment, B .1.351, hydrogen bond networks

Relation: https://figshare.com/articles/journal_contribution/Structural_and_Dynamical_Differences_in_the_Spike_Protein_RBD_in_the_SARS-CoV_2_Variants_B_1_1_7_and_B_1_351/14762536

الاتاحة: https://doi.org/10.1021/acs.jpcb.1c01626.s001

المؤلفون: Bidhya Thapa (14298985), Narayan P. Adhikari (14298988), Purushottam B. Tiwari (4471393), Prem P. Chapagain (1514950)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Molecular Biology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, meecad sequences show, detailed structural investigations, despite previous studies, core region enhances, core mcpg site, core mcgmcg site, c2h2 zinc finger, based computational approaches, 5 ′- flanking, downstream transcription outcomes, used molecular modeling, transcription regulation process, methylated cpg sites, meecad sequence compared, dna methylation signal, methylation signal, methylated sites, transcription factors, molecular mechanism, molecular dynamics, methylated dna, still lacking, stable complex

Relation: https://figshare.com/articles/media/A_5_-Flanking_C_G_Pair_at_the_Core_Region_Enhances_the_Recognition_and_Binding_of_Kaiso_to_Methylated_DNA/21777385

الاتاحة: https://doi.org/10.1021/acs.jcim.2c01294.s002

المؤلفون: Bidhya Thapa (14298985), Narayan P. Adhikari (14298988), Purushottam B. Tiwari (4471393), Prem P. Chapagain (1514950)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Molecular Biology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, meecad sequences show, detailed structural investigations, despite previous studies, core region enhances, core mcpg site, core mcgmcg site, c2h2 zinc finger, based computational approaches, 5 ′- flanking, downstream transcription outcomes, used molecular modeling, transcription regulation process, methylated cpg sites, meecad sequence compared, dna methylation signal, methylation signal, methylated sites, transcription factors, molecular mechanism, molecular dynamics, methylated dna, still lacking, stable complex

Relation: https://figshare.com/articles/media/A_5_-Flanking_C_G_Pair_at_the_Core_Region_Enhances_the_Recognition_and_Binding_of_Kaiso_to_Methylated_DNA/21777391

الاتاحة: https://doi.org/10.1021/acs.jcim.2c01294.s004

المؤلفون: Bidhya Thapa (14298985), Narayan P. Adhikari (14298988), Purushottam B. Tiwari (4471393), Prem P. Chapagain (1514950)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Molecular Biology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, meecad sequences show, detailed structural investigations, despite previous studies, core region enhances, core mcpg site, core mcgmcg site, c2h2 zinc finger, based computational approaches, 5 ′- flanking, downstream transcription outcomes, used molecular modeling, transcription regulation process, methylated cpg sites, meecad sequence compared, dna methylation signal, methylation signal, methylated sites, transcription factors, molecular mechanism, molecular dynamics, methylated dna, still lacking, stable complex

Relation: https://figshare.com/articles/media/A_5_-Flanking_C_G_Pair_at_the_Core_Region_Enhances_the_Recognition_and_Binding_of_Kaiso_to_Methylated_DNA/21777388

الاتاحة: https://doi.org/10.1021/acs.jcim.2c01294.s003

المؤلفون: Bidhya Thapa (14298985), Narayan P. Adhikari (14298988), Purushottam B. Tiwari (4471393), Prem P. Chapagain (1514950)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Molecular Biology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, meecad sequences show, detailed structural investigations, despite previous studies, core region enhances, core mcpg site, core mcgmcg site, c2h2 zinc finger, based computational approaches, 5 ′- flanking, downstream transcription outcomes, used molecular modeling, transcription regulation process, methylated cpg sites, meecad sequence compared, dna methylation signal, methylation signal, methylated sites, transcription factors, molecular mechanism, molecular dynamics, methylated dna, still lacking, stable complex

Relation: https://figshare.com/articles/dataset/A_5_-Flanking_C_G_Pair_at_the_Core_Region_Enhances_the_Recognition_and_Binding_of_Kaiso_to_Methylated_DNA/21777394

الاتاحة: https://doi.org/10.1021/acs.jcim.2c01294.s005

المؤلفون: Bidhya Thapa (14298985), Narayan P. Adhikari (14298988), Purushottam B. Tiwari (4471393), Prem P. Chapagain (1514950)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Molecular Biology, Cancer, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, meecad sequences show, detailed structural investigations, despite previous studies, core region enhances, core mcpg site, core mcgmcg site, c2h2 zinc finger, based computational approaches, 5 ′- flanking, downstream transcription outcomes, used molecular modeling, transcription regulation process, methylated cpg sites, meecad sequence compared, dna methylation signal, methylation signal, methylated sites, transcription factors, molecular mechanism, molecular dynamics, methylated dna, still lacking, stable complex

Relation: https://figshare.com/articles/dataset/A_5_-Flanking_C_G_Pair_at_the_Core_Region_Enhances_the_Recognition_and_Binding_of_Kaiso_to_Methylated_DNA/21777397

الاتاحة: https://doi.org/10.1021/acs.jcim.2c01294.s006

المؤلفون: Nisha Bhattarai (6161816), Prabin Baral (7506650), Bernard S. Gerstman (1514947), Prem P. Chapagain (1514950)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Molecular Biology, Immunology, Cancer, Infectious Diseases, Virology, Computational Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, B .1.351 variant, WT, SARS-CoV, variants B .1.1.7, host receptor ACE 2, virus spike protein receptor bindin., mutation, Y.V, million, Spike Protein RBD, infectivity, RBD loop segment, B .1.351, hydrogen bond networks

Relation: https://figshare.com/articles/media/Structural_and_Dynamical_Differences_in_the_Spike_Protein_RBD_in_the_SARS-CoV_2_Variants_B_1_1_7_and_B_1_351/14762539

الاتاحة: https://doi.org/10.1021/acs.jpcb.1c01626.s002