المؤلفون: Sergey A Shiryaev, Piotr Cieplak, Anton Cheltsov, Robert C Liddington, Alexey V Terskikh

المصدر: PLoS Pathogens, Vol 19, Iss 11, p e1011795 (2023)

مصطلحات موضوعية: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://journals.plos.org/plospathogens/article/file?id=10.1371/journal.ppat.1011795&type=printable; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

URL الوصول: https://doaj.org/article/a44671cfe2884cf18d9a0f2f1d244e9c

المؤلفون: Boris I Ratnikov, Piotr Cieplak, Albert G Remacle, Elise Nguyen, Jeffrey W Smith

المصدر: PLoS Computational Biology, Vol 17, Iss 2, p e1008101 (2021)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

URL الوصول: https://doaj.org/article/d3cb82b7268547169dae5205c45e6cdd

المؤلفون: Sonu Kumar, Piotr Cieplak

المصدر: PLoS ONE, Vol 13, Iss 1, p e0191157 (2018)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC5766141?pdf=render; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/3369eff9ee904fd39725aee1fd0dcb5f

المؤلفون: Shu-ichi Okamoto, Tomohiro Nakamura, Piotr Cieplak, Shing Fai Chan, Evgenia Kalashnikova, Lujian Liao, Sofiyan Saleem, Xuemei Han, Arjay Clemente, Anthony Nutter, Sam Sances, Christopher Brechtel, Daniel Haus, Florian Haun, Sara Sanz-Blasco, Xiayu Huang, Hao Li, Jeffrey D. Zaremba, Jiankun Cui, Zezong Gu, Rana Nikzad, Anne Harrop, Scott R. McKercher, Adam Godzik, John R. Yates III, Stuart A. Lipton

المصدر: Cell Reports, Vol 8, Iss 1, Pp 217-228 (2014)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2211124714004550; https://doaj.org/toc/2211-1247

URL الوصول: https://doaj.org/article/5bad9d4b59a14aecaae51657fd3f11ee

المؤلفون: Sonu Kumar, Boris I Ratnikov, Marat D Kazanov, Jeffrey W Smith, Piotr Cieplak

المصدر: PLoS ONE, Vol 10, Iss 5, p e0127877 (2015)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC4440711?pdf=render; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/49c3fe72c6144da4b4f863a1ca9e968b

المؤلفون: Sonu Kumar, Boris I Ratnikov, Marat D Kazanov, Jeffrey W Smith, Piotr Cieplak

المصدر: PLoS ONE, Vol 10, Iss 6, p e0131952 (2015)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC4482498?pdf=render; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/004f6eb158d441d391ec694a13228b92

المؤلفون: Sonu Kumar, Bram J van Raam, Guy S Salvesen, Piotr Cieplak

المصدر: PLoS ONE, Vol 9, Iss 10, p e110539 (2014)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC4201543?pdf=render; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/eeb516c3415f4759a3f01b3e8e6311b3

المؤلفون: Sergey A Shiryaev, Andrei V Chernov, Vladislav S Golubkov, Elliot R Thomsen, Eugene Chudin, Mark S Chee, Igor A Kozlov, Alex Y Strongin, Piotr Cieplak

المصدر: PLoS ONE, Vol 8, Iss 1, p e54290 (2013)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC3545927?pdf=render; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/7b1d91af66f44fd980f1353c226f6f79

المؤلفون: Sergey A Shiryaev, Elliot R Thomsen, Piotr Cieplak, Eugene Chudin, Anton V Cheltsov, Mark S Chee, Igor A Kozlov, Alex Y Strongin

المصدر: PLoS ONE, Vol 7, Iss 4, p e35759 (2012)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC3338790?pdf=render; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/ca81c0a6bd9c4369b391199e462f4705

المؤلفون: Sergey A Shiryaev, Alexei Y Savinov, Piotr Cieplak, Boris I Ratnikov, Khatereh Motamedchaboki, Jeffrey W Smith, Alex Y Strongin

المصدر: PLoS ONE, Vol 4, Iss 3, p e4952 (2009)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC2654159?pdf=render; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/bbd584347aae4faf9ca8cda3726db973

المؤلفون: Shibu Yooseph, Granger Sutton, Douglas B Rusch, Aaron L Halpern, Shannon J Williamson, Karin Remington, Jonathan A Eisen, Karla B Heidelberg, Gerard Manning, Weizhong Li, Lukasz Jaroszewski, Piotr Cieplak, Christopher S Miller, Huiying Li, Susan T Mashiyama, Marcin P Joachimiak, Christopher van Belle, John-Marc Chandonia, David A Soergel, Yufeng Zhai, Kannan Natarajan, Shaun Lee, Benjamin J Raphael, Vineet Bafna, Robert Friedman, Steven E Brenner, Adam Godzik, David Eisenberg, Jack E Dixon, Susan S Taylor, Robert L Strausberg, Marvin Frazier, J Craig Venter

المصدر: PLoS Biology, Vol 5, Iss 3, p e16 (2007)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

URL الوصول: https://doaj.org/article/d3c8becc5a9947e1bccad4901b6de6ec

المؤلفون: Shiji Zhao, Piotr Cieplak, Yong Duan, Ray Luo

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Molecular Biology, Immunology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, reliable force fields, polarizable gaussian multipole, atomic permanent dipoles, traditional resp model, pgm force field, combterm fitting strategy, combterm strategy, world examples, varying lengths, variants compared, two terminal, total charges, study aims, results demonstrate, n <, molecular modeling, insight underscores, electrostatic properties, amino acids, accurately representing, >- methylamide

Relation: https://figshare.com/articles/journal_contribution/Assessment_of_Amino_Acid_Electrostatic_Parametrizations_of_the_Polarizable_Gaussian_Multipole_Model/25282057

الاتاحة: https://doi.org/10.1021/acs.jctc.3c01347.s001
https://figshare.com/articles/journal_contribution/Assessment_of_Amino_Acid_Electrostatic_Parametrizations_of_the_Polarizable_Gaussian_Multipole_Model/25282057

المؤلفون: Sergey A. Shiryaev, Piotr Cieplak, Anton Cheltsov, Robert C. Liddington, Alexey V. Terskikh

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Evolutionary Biology, Infectious Diseases, Virology, Computational Biology, Biological Sciences not elsewhere classified, viral polyprotein processing, positively charged grove, like structures present, 3 &# 956, contiguous binding surface, tightly intertwined ns2b, closed &# 8221, rna binding occurs, range ns3hel processivity, ns3pro binds single, div >< p, classical protease activity, anchored ns2b polypeptide, open &# 8221, zika virus ns2b, zika virus, &# 8220, binding site, ns3 polypeptide, helicase activity, stranded rna

Relation: https://figshare.com/articles/journal_contribution/ZIKV_polyprotein_composition_and_processing_by_viral_and_host_cell_proteases_/24644226

الاتاحة: https://doi.org/10.1371/journal.ppat.1011795.s001
https://figshare.com/articles/journal_contribution/ZIKV_polyprotein_composition_and_processing_by_viral_and_host_cell_proteases_/24644226

المؤلفون: Sergey A. Shiryaev, Piotr Cieplak, Anton Cheltsov, Robert C. Liddington, Alexey V. Terskikh

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Evolutionary Biology, Infectious Diseases, Virology, Computational Biology, Biological Sciences not elsewhere classified, viral polyprotein processing, positively charged grove, like structures present, 3 &# 956, contiguous binding surface, tightly intertwined ns2b, closed &# 8221, rna binding occurs, range ns3hel processivity, ns3pro binds single, div >< p, classical protease activity, anchored ns2b polypeptide, open &# 8221, zika virus ns2b, zika virus, &# 8220, binding site, ns3 polypeptide, helicase activity, stranded rna

Relation: https://figshare.com/articles/journal_contribution/Superimposition_of_eZiPro5_and_bZiPro6_crystal_structures_/24644235

الاتاحة: https://doi.org/10.1371/journal.ppat.1011795.s004
https://figshare.com/articles/journal_contribution/Superimposition_of_eZiPro5_and_bZiPro6_crystal_structures_/24644235

المؤلفون: Sergey A. Shiryaev, Piotr Cieplak, Anton Cheltsov, Robert C. Liddington, Alexey V. Terskikh

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Evolutionary Biology, Infectious Diseases, Virology, Computational Biology, Biological Sciences not elsewhere classified, viral polyprotein processing, positively charged grove, like structures present, 3 &# 956, contiguous binding surface, tightly intertwined ns2b, closed &# 8221, rna binding occurs, range ns3hel processivity, ns3pro binds single, div >< p, classical protease activity, anchored ns2b polypeptide, open &# 8221, zika virus ns2b, zika virus, &# 8220, binding site, ns3 polypeptide, helicase activity, stranded rna

Relation: https://figshare.com/articles/journal_contribution/An_overlap_of_ZIKV_NS2B-NS3pro_PDB_ID_7M1V_and_JEV_NS2B-NS3pro_PDB_ID_4R8T_/24644229

الاتاحة: https://doi.org/10.1371/journal.ppat.1011795.s002
https://figshare.com/articles/journal_contribution/An_overlap_of_ZIKV_NS2B-NS3pro_PDB_ID_7M1V_and_JEV_NS2B-NS3pro_PDB_ID_4R8T_/24644229

المؤلفون: Sergey A. Shiryaev, Piotr Cieplak, Anton Cheltsov, Robert C. Liddington, Alexey V. Terskikh

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Evolutionary Biology, Infectious Diseases, Virology, Computational Biology, Biological Sciences not elsewhere classified, viral polyprotein processing, positively charged grove, like structures present, 3 &# 956, contiguous binding surface, tightly intertwined ns2b, closed &# 8221, rna binding occurs, range ns3hel processivity, ns3pro binds single, div >< p, classical protease activity, anchored ns2b polypeptide, open &# 8221, zika virus ns2b, zika virus, &# 8220, binding site, ns3 polypeptide, helicase activity, stranded rna

Relation: https://figshare.com/articles/journal_contribution/S3_Fig_-/24644232

الاتاحة: https://doi.org/10.1371/journal.ppat.1011795.s003
https://figshare.com/articles/journal_contribution/S3_Fig_-/24644232

المؤلفون: Boris I. Ratnikov (266497), Piotr Cieplak (103772), Albert G. Remacle (10178830), Elise Nguyen (10178833), Jeffrey W. Smith (135477)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Inorganic Chemistry, Infectious Diseases, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, substrate numbers, substrate phage display, substrate selectivity, acid sequences, profile specificities, protease family, substrate specificity, substrate recognition, activity probes, MMP -9, protease specificity Proteases, protease specificity, information theory-based data analysis, Next Generation Sequencing

Relation: https://figshare.com/articles/journal_contribution/List_of_all_tetramer_clusters_and_corresponding_hexamers_aligned_along_P3-P1_positions_of_MMP-2_substrates_/14079034

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008101.s004

المؤلفون: Boris I. Ratnikov (266497), Piotr Cieplak (103772), Albert G. Remacle (10178830), Elise Nguyen (10178833), Jeffrey W. Smith (135477)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Inorganic Chemistry, Infectious Diseases, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, substrate numbers, substrate phage display, substrate selectivity, acid sequences, profile specificities, protease family, substrate specificity, substrate recognition, activity probes, MMP -9, protease specificity Proteases, protease specificity, information theory-based data analysis, Next Generation Sequencing

Relation: https://figshare.com/articles/journal_contribution/List_of_all_tetramer_clusters_and_corresponding_hexamers_aligned_along_P3-P1_positions_of_MMP-9_substrates_/14079037

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008101.s005

المؤلفون: Boris I. Ratnikov (266497), Piotr Cieplak (103772), Albert G. Remacle (10178830), Elise Nguyen (10178833), Jeffrey W. Smith (135477)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Inorganic Chemistry, Infectious Diseases, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, substrate numbers, substrate phage display, substrate selectivity, acid sequences, profile specificities, protease family, substrate specificity, substrate recognition, activity probes, MMP -9, protease specificity Proteases, protease specificity, information theory-based data analysis, Next Generation Sequencing

Relation: https://figshare.com/articles/journal_contribution/Analysis_of_combined_selectomes_of_MMP-2_and_9_/14079070

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008101.s014

المؤلفون: Shiji Zhao, Piotr Cieplak, Yong Duan, Ray Luo

المصدر: Journal of Chemical Theory and Computation. 19:924-941

مصطلحات موضوعية: Physical and Theoretical Chemistry, Computer Science Applications

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::9b38d753a5729d4578987b8890470157
https://doi.org/10.1021/acs.jctc.2c01048