المؤلفون: Schorn, Michelle A, Verhoeven, Stefan, Ridder, Lars, Huber, Florian, Acharya, Deepa D, Aksenov, Alexander A, Aleti, Gajender, Moghaddam, Jamshid Amiri, Aron, Allegra T, Aziz, Saefuddin, Bauermeister, Anelize, Bauman, Katherine D, Baunach, Martin, Beemelmanns, Christine, Beman, J Michael, Berlanga-Clavero, María Victoria, Blacutt, Alex A, Bode, Helge B, Boullie, Anne, Brejnrod, Asker, Bugni, Tim S, Calteau, Alexandra, Cao, Liu, Carrión, Víctor J, Castelo-Branco, Raquel, Chanana, Shaurya, Chase, Alexander B, Chevrette, Marc G, Costa-Lotufo, Leticia V, Crawford, Jason M, Currie, Cameron R, Cuypers, Bart, Dang, Tam, de Rond, Tristan, Demko, Alyssa M, Dittmann, Elke, Du, Chao, Drozd, Christopher, Dujardin, Jean-Claude, Dutton, Rachel J, Edlund, Anna, Fewer, David P, Garg, Neha, Gauglitz, Julia M, Gentry, Emily C, Gerwick, Lena, Glukhov, Evgenia, Gross, Harald, Gugger, Muriel, Guillén Matus, Dulce G, Helfrich, Eric JN, Hempel, Benjamin-Florian, Hur, Jae-Seoun, Iorio, Marianna, Jensen, Paul R, Kang, Kyo Bin, Kaysser, Leonard, Kelleher, Neil L, Kim, Chung Sub, Kim, Ki Hyun, Koester, Irina, König, Gabriele M, Leao, Tiago, Lee, Seoung Rak, Lee, Yi-Yuan, Li, Xuanji, Little, Jessica C, Maloney, Katherine N, Männle, Daniel, Martin H., Christian, McAvoy, Andrew C, Metcalf, Willam W, Mohimani, Hosein, Molina-Santiago, Carlos, Moore, Bradley S, Mullowney, Michael W, Muskat, Mitchell, Nothias, Louis-Félix, O’Neill, Ellis C, Parkinson, Elizabeth I, Petras, Daniel, Piel, Jörn, Pierce, Emily C, Pires, Karine, Reher, Raphael, Romero, Diego, Roper, M Caroline, Rust, Michael, Saad, Hamada, Saenz, Carmen, Sanchez, Laura M, Sørensen, Søren Johannes, Sosio, Margherita, Süssmuth, Roderich D, Sweeney, Douglas, Tahlan, Kapil, Thomson, Regan J, Tobias, Nicholas J, Trindade-Silva, Amaro E, van Wezel, Gilles P

المصدر: Nature Chemical Biology. 17(4)

مصطلحات موضوعية: Human Genome, Genetics, Biotechnology, Generic health relevance, Data Mining, Databases, Factual, Genomics, Metabolomics, Medicinal and Biomolecular Chemistry, Biochemistry and Cell Biology, Biochemistry & Molecular Biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/4h57c4m0
https://escholarship.org/content/qt4h57c4m0/qt4h57c4m0.pdf

المؤلفون: Spencer-Drakes, Tara C J, Sarabia, Angel, Heussler, Gary, Pierce, Emily C, Morin, Manon, Villareal, Steven, Dutton, Rachel J

المصدر: ISME Communications ; ISSN 2730-6151

الاتاحة: http://dx.doi.org/10.1093/ismeco/ycae101
https://academic.oup.com/ismecommun/advance-article-pdf/doi/10.1093/ismeco/ycae101/58723168/ycae101.pdf

المؤلفون: Pierce, Emily C, Morin, Manon, Little, Jessica C, Liu, Roland B, Tannous, Joanna, Keller, Nancy P, Pogliano, Kit, Wolfe, Benjamin E, Sanchez, Laura M, Dutton, Rachel J

المصدر: Nature Microbiology. 6(1)

مصطلحات موضوعية: Human Genome, Genetics, Infectious Diseases, Emerging Infectious Diseases, Aetiology, 2.2 Factors relating to the physical environment, Infection, Biotin, Cheese, DNA Barcoding, Taxonomic, Escherichia coli, Fungi, Genetic Fitness, Genome, Bacterial, High-Throughput Screening Assays, Iron, Microbial Interactions, Microbiota, Pseudomonas, Microbiology, Medical Microbiology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/9px2x661

المؤلفون: Cleary, Jessica L, Luu, Gordon T, Pierce, Emily C, Dutton, Rachel J, Sanchez, Laura M

المصدر: Journal of the American Society for Mass Spectrometry. 30(8)

مصطلحات موضوعية: Bacteria, Fungi, Chromatography, Liquid, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Algorithms, Software, Tandem Mass Spectrometry, Metabolomics, Workflow, Cheese curd media, LC-MS/MS, Multispecies interactions, LC-MS, MS, Analytical Chemistry, Medicinal and Biomolecular Chemistry, Physical Chemistry (incl. Structural)

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/15m2n7dd

المؤلفون: Morin, Manon, Pierce, Emily C, Dutton, Rachel J

مصطلحات موضوعية: Escherichia coli, DNA Transposable Elements, Ecosystem, Microbial Interactions, DNA Barcoding, Taxonomic, High-Throughput Nucleotide Sequencing, Microbiota, E. coli, cheese, cross-feeding, higher-order interactions, infectious disease, microbiology, microbiome, species interactions, transposon sequencing, DNA Barcoding, Taxonomic, Biochemistry and Cell Biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/8c82100h

المؤلفون: Rubin, Benjamin E, Huynh, TuAnh Ngoc, Welkie, David G, Diamond, Spencer, Simkovsky, Ryan, Pierce, Emily C, Taton, Arnaud, Lowe, Laura C, Lee, Jenny J, Rifkin, Scott A, Woodward, Joshua J, Golden, Susan S

المصدر: PLoS genetics. 14(4)

مصطلحات موضوعية: Synechococcus, Phosphorus-Oxygen Lyases, Bacterial Proteins, Cyclic AMP, Proteomics, Signal Transduction, Oxidative Stress, Mutation, High-Throughput Screening Assays, Biotechnology, Genetics, Developmental Biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/42q9v8nf

المؤلفون: Saak, Christina C., Pierce, Emily C., Dinh, Cong B., Portik, Daniel, Hall, Richard, Ashby, Meredith, Dutton, Rachel J.

المساهمون: Cotter, Paul D., HHS | National Institutes of Health, David and Lucile Packard Foundation, Graduate Women in Science, Pew Charitable Trusts

المصدر: mSystems ; volume 8, issue 1 ; ISSN 2379-5077

الاتاحة: http://dx.doi.org/10.1128/msystems.00701-22
https://journals.asm.org/doi/pdf/10.1128/msystems.00701-22

المؤلفون: Pierce, Emily C, Dutton, Rachel J

المساهمون: National Science Foundation

المصدر: Current Opinion in Microbiology ; volume 65, page 56-63 ; ISSN 1369-5274

الاتاحة: http://dx.doi.org/10.1016/j.mib.2021.10.008
https://api.elsevier.com/content/article/PII:S1369527421001442?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S1369527421001442?httpAccept=text/plain

المؤلفون: Castelo-Branco, Raquel, Verhoeven, Stefan, Ridder, Lars, Huber, Florian, Acharya, Deepa D., Aksenov, Alexander A., Aleti, Gajender, Moghaddam, Jamshid Amiri, Aron, Allegra T., Aziz, Saefuddin, Bauermeister, Anelize, Bauman, Katherine D., Baunach, Martin, Beemelmanns, Christine, Beman, J. Michael, Berlanga-Clavero, Maria Victoria, Blacutt, Alex A., Bode, Helge B., Boullie, Anne, Brejnrod, Asker, Bugni, Tim S., Calteau, Alexandra, Cao, Liu, Carrion, Victor J., Chanana, Shaurya, Chase, Alexander B., Chevrette, Marc G., Costa-Lotufo, Leticia V., Crawford, Jason M., Currie, Cameron R., Cuypers, Bart, Dang, Tam, de Rond, Tristan, Demko, Alyssa M., Dittmann, Elke, Du, Chao, Drozd, Christopher, Dujardin, Jean-Claude, Dutton, Rachel J., Edlund, Anna, Fewer, David P., Garg, Neha, Gauglitz, Julia M., Gentry, Emily C., Gerwick, Lena, Glukhov, Evgenia, Gross, Harald, Gugger, Muriel, Guillen Matus, Dulce G., Helfrich, Eric J. N., Hempel, Benjamin-Florian, Hur, Jae-Seoun, Iorio, Marianna, Jensen, Paul R., Kang, Kyo Bin, Kaysser, Leonard, Kelleher, Neil L., Kim, Chung Sub, Kim, Ki Hyun, Koester, Irina, Koenig, Gabriele M., Leao, Tiago, Lee, Seoung Rak, Lee, Yi-Yuan, Li, Xuanji, Little, Jessica C., Maloney, Katherine N., Maennle, Daniel, Martin H., Christian, McAvoy, Andrew C., Metcalf, Willam W., Mohimani, Hosein, Molina-Santiago, Carlos, Moore, Bradley S., Mullowney, Michael W., Muskat, Mitchell, Nothias, Louis-Felix, O'Neill, Ellis C., Parkinson, Elizabeth I., Petras, Daniel, Piel, Jorn, Pierce, Emily C., Pires, Karine, Reher, Raphael, Romero, Diego, Roper, M. Caroline, Rust, Michael, Saad, Hamada, Saenz, Carmen, Sanchez, Laura M., Sorensen, Soren Johannes, Sosio, Margherita, Sussmuth, Roderich D., Sweeney, Douglas, Tahlan, Kapil, Thomson, Regan J., Tobias, Nicholas J., Trindade-Silva, Amaro E., van Wezel, Gilles P., Wang, Mingxun, Weldon, Kelly C., Zhang, Fan, Ziemert, Nadine, Duncan, Katherine R., Cruesemann, Max, Rogers, Simon, Dorrestein, Pieter C., Medema, Marnix H., van der Hooft, Justin J. J.

المساهمون: Department of Food and Nutrition, Department of Microbiology, Helsinki Institute of Sustainability Science (HELSUS), Microbial Natural Products

مصطلحات موضوعية: Biochemistry, cell and molecular biology

وصف الملف: application/pdf

Relation: The research reported in this publication was supported by an ASDI eScience Grant (ASDI.2017.030) from the Netherlands eScience Center (to J.J.J.v.d.H. and M.H.M.), a National Institutes of Health (NIH) Genome to Natural Products Network supplementary award (no. U01GM110706 to M.H.M.), a Wageningen Graduate School Postdoc Talent Program fellowship (to M.A.S.), a Marie Sklodowska-Curie Individual Fellowship from the European Union (MSCA-IF-EF-ST-897121 to M.A.S.), the National Science Foundation (NSF) (1817955 to L.M.S. and 1817887 to R.J.D.), a Fundaçao para a Ciencia e Tecnologia (FCT) fellowship (SFRH/BD/136367/2018 to R.C.B.), the National Cancer Institute of the NIH (award no. F32CA221327 to M.W.M.), the University of California, San Diego, Scripps Institution of Oceanography, and two grant from the NIH (Awards GM118815 and 107550 to L.G.), and the National Center for Complementary and Integrative Health of the NIH (award no. R01AT009143 to R.J.T. and N.L.K.).; Castelo-Branco , R , Verhoeven , S , Ridder , L , Huber , F , Acharya , D D , Aksenov , A A , Aleti , G , Moghaddam , J A , Aron , A T , Aziz , S , Bauermeister , A , Bauman , K D , Baunach , M , Beemelmanns , C , Beman , J M , Berlanga-Clavero , M V , Blacutt , A A , Bode , H B , Boullie , A , Brejnrod , A , Bugni , T S , Calteau , A , Cao , L , Carrion , V J , Castelo-Branco , R , Chanana , S , Chase , A B , Chevrette , M G , Costa-Lotufo , L V , Crawford , J M , Currie , C R , Cuypers , B , Dang , T , de Rond , T , Demko , A M , Dittmann , E , Du , C , Drozd , C , Dujardin , J-C , Dutton , R J , Edlund , A , Fewer , D P , Garg , N , Gauglitz , J M , Gentry , E C , Gerwick , L , Glukhov , E , Gross , H , Gugger , M , Guillen Matus , D G , Helfrich , E J N , Hempel , B-F , Hur , J-S , Iorio , M , Jensen , P R , Kang , K B , Kaysser , L , Kelleher , N L , Kim , C S , Kim , K H , Koester , I , Koenig , G M , Leao , T , Lee , S R , Lee , Y-Y , Li , X , Little , J C , Maloney , K N , Maennle , D , Martin H. , C , McAvoy , A C , Metcalf , W W , Mohimani , H , Molina-Santiago , C , Moore , B S , Mullowney , M W , Muskat , M , Nothias , L-F , O'Neill , E C , Parkinson , E I , Petras , D , Piel , J , Pierce , E C , Pires , K , Reher , R , Romero , D , Roper , M C , Rust , M , Saad , H , Saenz , C , Sanchez , L M , Sorensen , S J , Sosio , M , Sussmuth , R D , Sweeney , D , Tahlan , K , Thomson , R J , Tobias , N J , Trindade-Silva , A E , van Wezel , G P , Wang , M , Weldon , K C , Zhang , F , Ziemert , N , Duncan , K R , Cruesemann , M , Rogers , S , Dorrestein , P C , Medema , M H & van der Hooft , J J J 2021 , ' A community resource for paired genomic and metabolomic data mining ' , Nature Chemical Biology , vol. 17 , pp. 363-368 . https://doi.org/10.1038/s41589-020-00724-z; ORCID: /0000-0003-3978-4845/work/96622851; http://hdl.handle.net/10138/332269; f5a30990-bc94-4c71-ae00-3d5a3129504b; 000618175000001

الاتاحة: http://hdl.handle.net/10138/332269

المؤلفون: Schorn, Michelle A., Verhoeven, Stefan, Ridder, Lars, Huber, Florian, Acharya, Deepa D., Aksenov, Alexander A., Aleti, Gajender, Moghaddam, Jamshid Amiri, Aron, Allegra T., Aziz, Saefuddin, Bauermeister, Anelize, Bauman, Katherine D., Baunach, Martin, Beemelmanns, Christine, Beman, J. Michael, Berlanga-Clavero, María Victoria, Blacutt, Alex A., Bode, Helge B., Boullie, Anne, Brejnrod, Asker, Bugni, Tim S., Calteau, Alexandra, Cao, Liu, Carrión, Víctor J., Castelo-Branco, Raquel, Chanana, Shaurya, Chase, Alexander B., Chevrette, Marc G., Costa-Lotufo, Leticia V., Crawford, Jason M., Currie, Cameron R., Cuypers, Bart, Dang, Tam, de Rond, Tristan, Demko, Alyssa M., Dittmann, Elke, Du, Chao, Drozd, Christopher, Dujardin, Jean-Claude, Dutton, Rachel J., Edlund, Anna, Fewer, David P., Garg, Neha, Gauglitz, Julia M., Gentry, Emily C., Gerwick, Lena, Glukhov, Evgenia, Gross, Harald, Gugger, Muriel, Guillén Matus, Dulce G., Helfrich, Eric J. N., Hempel, Benjamin-Florian, Hur, Jae-Seoun, Iorio, Marianna, Jensen, Paul R., Kang, Kyo Bin, Kaysser, Leonard, Kelleher, Neil L., Kim, Chung Sub, Kim, Ki Hyun, Koester, Irina, König, Gabriele M., Leao, Tiago, Lee, Seoung Rak, Lee, Yi-Yuan, Li, Xuanji, Little, Jessica C., Maloney, Katherine N., Männle, Daniel, Martin H., Christian, McAvoy, Andrew C., Metcalf, Willam W., Mohimani, Hosein, Molina-Santiago, Carlos, Moore, Bradley S., Mullowney, Michael W., Muskat, Mitchell, Nothias, Louis-Félix, O’Neill, Ellis C., Parkinson, Elizabeth I., Petras, Daniel, Piel, Jörn, Pierce, Emily C., Pires, Karine, Reher, Raphael, Romero, Diego, Roper, M. Caroline, Rust, Michael, Saad, Hamada, Saenz, Carmen, Sanchez, Laura M., Sørensen, Søren Johannes, Sosio, Margherita, Süssmuth, Roderich D., Sweeney, Douglas, Tahlan, Kapil, Thomson, Regan J., Tobias, Nicholas J., Trindade-Silva, Amaro E., van Wezel, Gilles P., Wang, Mingxun, Weldon, Kelly C., Zhang, Fan, Ziemert, Nadine, Duncan, Katherine R., Crüsemann, Max, Rogers, Simon, Dorrestein, Pieter C., Medema, Marnix H., van der Hooft, Justin J. J.

المصدر: 1552-4450 ; Nature chemical biology

مصطلحات موضوعية: Chemistry, Biology

Relation: info:eu-repo/semantics/altIdentifier/isi/000618175000001

الاتاحة: https://hdl.handle.net/10067/1759900151162165141
https://repository.uantwerpen.be/docstore/d:irua:4977

المؤلفون: Luu, Gordon T., Little, Jessica C., Pierce, Emily C., Morin, Manon, Ertekin, Celine A., Wolfe, Benjamin E., Baars, Oliver, Dutton, Rachel J., Sanchez, Laura M.

المساهمون: University of California, San Diego, National Institute of General Medical Sciences, Division of Molecular and Cellular Biosciences, National Center for Complementary and Integrative Health

المصدر: The Analyst ; volume 148, issue 13, page 3002-3018 ; ISSN 0003-2654 1364-5528

الاتاحة: http://dx.doi.org/10.1039/d3an00408b
http://pubs.rsc.org/en/content/articlepdf/2023/AN/D3AN00408B

المؤلفون: Saak, Christina C., Pierce, Emily C., Dinh, Cong B., Portik, Daniel, Hall, Richard, Ashby, Meredith, Dutton, Rachel J.

مصطلحات موضوعية: metagenome assemblies, bacterial isolate assemblies, washed-rind cheese, multi-platform metagenomics, PacBio HiFi sequencing, Illumina short-read sequencing, Nanopore long-read sequencing, Metagenome-assembled genomes (MAG's)

Relation: https://doi.org/10.5281/zenodo.6791807; https://zenodo.org/communities/dryad; https://doi.org/10.5061/dryad.bg79cnpd8; oai:zenodo.org:7348640

الاتاحة: https://doi.org/10.5061/dryad.bg79cnpd8

المؤلفون: Pierce, Emily C., LaFayette, Peter R., Ortega, María A., Joyce, Blake L., Kopsell, Dean A., Parrott, Wayne A.

المساهمون: Peña, Leandro

المصدر: PLOS ONE ; volume 10, issue 9, page e0138196 ; ISSN 1932-6203

الاتاحة: http://dx.doi.org/10.1371/journal.pone.0138196
http://dx.plos.org/10.1371/journal.pone.0138196

المؤلفون: Pierce, Emily C., Morin, Manon, Little, Jessica C., Liu, Roland B., Tannous, Joanna, Keller, Nancy P., Pogliano, Kit, Wolfe, Benjamin E., Sanchez, Laura M., Dutton, Rachel J.

المساهمون: U.S. Department of Health & Human Services | National Institutes of Health, National Science Foundation

المصدر: Nature Microbiology ; volume 6, issue 1, page 87-102 ; ISSN 2058-5276

الاتاحة: http://dx.doi.org/10.1038/s41564-020-00800-z
https://www.nature.com/articles/s41564-020-00800-z.pdf
https://www.nature.com/articles/s41564-020-00800-z

المؤلفون: Morin, Manon, Pierce, Emily C, Dutton, Rachel J

الاتاحة: http://dx.doi.org/10.7554/elife.37072.032