المؤلفون: Baviththira Suganthan, Ashley M. Rogers, Clay S. Crippen, Hamid Asadi, Or Zolti, Christine M. Szymanski, Ramaraja P. Ramasamy

المصدر: Biosensors, Vol 14, Iss 8, p 402 (2024)

مصطلحات موضوعية: food safety, impedance, phage protein, foodborne pathogen, Biotechnology, TP248.13-248.65

وصف الملف: electronic resource

Relation: https://www.mdpi.com/2079-6374/14/8/402; https://doaj.org/toc/2079-6374

URL الوصول: https://doaj.org/article/92e89395c8c3473c9c928591f03e13a9

المؤلفون: Doublier, S, Cirrincione, S, Scardaci, R, Botta, C, Lamberti, C, Giuseppe, F Di, Angelucci, S, Rantsiou, K, Cocolin, L, Pessione, E

المساهمون: Doublier, S, Cirrincione, S, Scardaci, R, Botta, C, Lamberti, C, Giuseppe, F Di, Angelucci, S, Rantsiou, K, Cocolin, L, Pessione, E

مصطلحات موضوعية: Colorectal cancer, Doxorubicin resistance, Lactic acid bacteria, P40-protein, Phage protein, Proteomic, Butyrate, Cell Survival, HT29 Cell, Human, Plant Extract, Neoplasm, Probiotics

Relation: info:eu-repo/semantics/altIdentifier/pmid/35430488; volume:260; firstpage:1; lastpage:12; numberofpages:12; journal:MICROBIOLOGICAL RESEARCH; http://hdl.handle.net/2318/1869691; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85129382217; https://www.sciencedirect.com/science/article/pii/S0944501322000520

الاتاحة: http://hdl.handle.net/2318/1869691
https://doi.org/10.1016/j.micres.2022.127012
https://www.sciencedirect.com/science/article/pii/S0944501322000520

المؤلفون: Krysten A. Jones (1616632), Harrison M. Snodgrass (7540607), Ketaki Belsare (11427100), Bryan C. Dickinson (151937), Jared C. Lewis (1425370)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Pharmacology, Biotechnology, Evolutionary Biology, Cancer, Inorganic Chemistry, Space Science, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, optimizing biosynthetic pathways, novel substrate scope, link enzymatic activity, genetic diversity resulting, expanded catalytic properties, evolve enzyme variants, easily detectable readouts, altered substrate scope, active enzyme variants, biocatalysts remains underexplored, assisted continuous evolution, assisted continuous selection, essential phage protein, chemical synthesis ligand, based continuous evolution, library selection technologies, based evolution, selection technologies, engineer biocatalysts

Relation: https://figshare.com/articles/journal_contribution/Phage-Assisted_Continuous_Evolution_and_Selection_of_Enzymes_for_Chemical_Synthesis/16613554

الاتاحة: https://doi.org/10.1021/acscentsci.1c00811.s001

المؤلفون: Nolan J. O’Connor (10297400), Antoni E. Bordoy (10297403), Anushree Chatterjee (207964)

مصطلحات موضوعية: Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Space Science, Mathematical Sciences not elsewhere classified, influence gene expression, RNA Polymerase Processivity Control., antisense RNA interference, processivity control, NOR logic gates, NAND, RNAP, TI, phage protein Psu, engineering Transcriptional Interfe., couple protein roadblock, transcription-level gene repression

Relation: https://figshare.com/articles/journal_contribution/Engineering_Transcriptional_Interference_through_RNA_Polymerase_Processivity_Control/14210114

الاتاحة: https://doi.org/10.1021/acssynbio.0c00534.s001

المؤلفون: Peter Braun, Nadja Rupprich, Diana Neif, Gregor Grass

المصدر: Viruses; Volume 13; Issue 8; Pages: 1462

مصطلحات موضوعية: bacteriophage, receptor binding protein, reporter fusions, enzyme-linked phage protein assay, ELPRA, anthrax, Bacillus anthracis

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Bacterial Viruses; https://dx.doi.org/10.3390/v13081462

الاتاحة: https://doi.org/10.3390/v13081462

المؤلفون: Puentes Mozo, Juanita

المساهمون: García Botero, Camilo, Reyes Muñoz, Alejandro, Facultad de Ciencias::Biología Computacional y Ecología Microbiana

مصطلحات موضوعية: Phage protein classification, Multi-modality approach, Viral proteins, Transformer models, Deep learning, Artificial intelligence, PHROGs database, PHROG-function prediction, Transfer learning in virology, Microbiología

وصف الملف: 22 páginas; application/pdf

Relation: Baek, M., DiMaio, F., Anishchenko, I., Dauparas, J., Ovchinnikov, S., Lee, G. R., Wang, J., Cong, Q., Kinch, L. N., Schaeffer, R. D., et al. (2021). Accurate prediction of protein structures and interactions using a three-track neural network. Science, 373(6557), 871–876.; Bebis, G., & Georgiopoulos, M. (1994). Feed-forward neural networks. Ieee Potentials, 13(4), 27–31.; Bouras, G., Nepal, R., Houtak, G., Psaltis, A. J., Wormald, P.-J., & Vreugde, S. (2023). Pharokka: A fast scalable bacteriophage annotation tool. Bioinformatics, 39(1), btac776.; Brandes, N., Ofer, D., Peleg, Y., Rappoport, N., & Linial, M. (2022). Proteinbert: A universal deep-learning model of protein sequence and function. Bioinformatics, 38(8), 2102–2110.; Brown, T., Mann, B., Ryder, N., Subbiah, M., Kaplan, J. D., Dhariwal, P., Neelakantan, A., Shyam, P., Sastry, G., Askell, A., et al. (2020). Language models are few-shot learners. Advances in neural information processing systems, 33, 1877–1901.; Câmara, G. B., Coutinho, M. G., Silva, L. M. d., Gadelha, W. V. d. N., Torquato, M. F., Barbosa, R. d. M., & Fernandes, M. A. (2022). Convolutional neural network applied to sars-cov-2 sequence classification. Sensors, 22(15), 5730.; Choi, S. R., & Lee, M. (2023). Transformer architecture and attention mechanisms in genome data analysis: A comprehensive review. Biology, 12(7), 1033.; Dosovitskiy, A., Beyer, L., Kolesnikov, A., Weissenborn, D., Zhai, X., Unterthiner, T., Dehghani, M., Minderer, M., Heigold, G., Gelly, S., et al. (2020). An image is worth 16x16 words: Transformers for image recognition at scale. arXiv preprint arXiv:2010.11929.; Elnaggar, A., Heinzinger, M., Dallago, C., et al. (2020). Prottrans: Towards cracking the language of life’s code through 500 self-supervised deep learning and high performance computing [j]. IEEE Trans, 685.; Fang, Z., Feng, T., Zhou, H., & Chen, M. (2022). Deepvp: Identification and classification of phage virion proteins using deep learning. Gigascience, 11, giac076.; Fang, Z., & Zhou, H. (2021). Virionfinder: Identification of complete and partial prokaryote virus virion protein from virome data using the sequence and biochemical properties of amino acids. Frontiers in microbiology, 12, 615711.; Flamholz, Z. N., Biller, S. J., & Kelly, L. (2024). Large language models improve annotation of prokaryotic viral proteins. Nature Microbiology, 9(2), 537–549.; Hatfull, G. F., & Hendrix, R. W. (2011). Bacteriophages and their genomes. Current opinion in virology, 1(4), 298–303.; Heinzinger, M., Weissenow, K., Sanchez, J. G., Henkel, A., Mirdita, M., Steinegger, M., & Rost, B. (2023). Bilingual language model for protein sequence and structure. bioRxiv, 2023–07.; Jain, P., & Hirst, J. D. (2010). Automatic structure classification of small proteins using random forest. 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الاتاحة: https://hdl.handle.net/1992/74920

المؤلفون: Gobec, Ana Felicita

المساهمون: Butala, Matej

مصطلحات موضوعية: SOS response, bacteriophages, lytic repressor, bakteriofagi, Bacillus thuringiensis, odziv SOS, fagni protein gp7, proteins, bacteriophage GIL01, phage protein gp7, bakteriofag GIL01, udc:577.21:578.347, protein LexA, represor litičnega cikla, proteini

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=od______3505::bdc562e145a5c28899322be869ba0a86
https://hdl.handle.net/20.500.12556/RUL-138150

المؤلفون: Gobec, Ana Felicita

المساهمون: Butala, Matej

مصطلحات موضوعية: bakteriofagi, bakteriofag GIL01, Bacillus thuringiensis, proteini, protein LexA, odziv SOS, fagni protein gp7, represor litičnega cikla, bacteriophages, bacteriophage GIL01, proteins, SOS response, phage protein gp7, lytic repressor, info:eu-repo/classification/udc/577.21:578.347

وصف الملف: application/pdf

Relation: https://repozitorij.uni-lj.si/IzpisGradiva.php?id=138150; https://repozitorij.uni-lj.si/Dokument.php?id=158390&dn=; https://plus.cobiss.net/cobiss/si/sl/bib/115151875; http://hdl.handle.net/20.500.12556/RUL-138150

الاتاحة: https://repozitorij.uni-lj.si/IzpisGradiva.php?id=138150
https://repozitorij.uni-lj.si/Dokument.php?id=158390&dn=
https://plus.cobiss.net/cobiss/si/sl/bib/115151875
https://hdl.handle.net/20.500.12556/RUL-138150

المؤلفون: McEntee, Kevin, Hesse, Joanne E., Epstein, Wolfgang

المصدر: Proceedings of the National Academy of Sciences of the United States of America, 1976 Nov 01. 73(11), 3979-3983.

URL الوصول: https://www.jstor.org/stable/66437

المؤلفون: Fredj Ben Bdira (10290425), Amanda M. Erkelens (9696082), Liang Qin (10295753), Alexander N. Volkov (10295756), Andrew M. Lippa (10295773), Nicholas Bowring (10295774), Aimee L. Boyle (10295783), Marcellus Ubbink (10295785), Simon L. Dove (10295788), Remus T. Dame (9664997)

مصطلحات موضوعية: Biochemistry and Cell Biology, Bacterial xenogeneic silencers, phage protein, electrostatic zipper, anti-repression mechanism

Relation: https://figshare.com/articles/dataset/Data_underlying_the_publication_Novel_anti-repression_mechanism_of_H-NS_proteins_by_a_phage_protein/15097611

الاتاحة: https://doi.org/10.4121/15097611.v1

المؤلفون: Adriaenssens, EM, Krupovic, M, Knezevic, P, Ackermann, H-W, Barylski, J, Brister, JR, Clokie, MRC, Duffy, S, Dutilh, BE, Edwards, RA, Enault, F, Jang, HB, Klumpp, J, Kropinski, AM, Lavigne, R, Poranen, MM, Prangishvili, D, Rumnieks, J, Sullivan, MB, Wittmann, J, Oksanen, HM, Gillis, A, Kuhn, JH

مصطلحات موضوعية: Viruses, Listeria, Major Capsid Protein, Phage Protein, Virus Community, Expansive Group, info, droit

Relation: https://link.springer.com/article/10.1007%2Fs00705-016-3173-4

الاتاحة: https://link.springer.com/article/10.1007%2Fs00705-016-3173-4

المؤلفون: Philippe Le Mercier, Patrick Masson, Ariane Toussaint, Chantal Hulo

المصدر: Virology. 477:155-163

مصطلحات موضوعية: Genetics, Transposable element, Phage taxonomy, biology, “Myosaltovirinae”, viruses, “Siphosaltovirinae”, Molecular Sequence Annotation, Myoviridae, biology.organism_classification, Genome, Phage protein annotation, Siphoviridae, Viral Proteins, Caudovirales, Lytic cycle, Lysogenic cycle, Virology, Proteobacteria, DNA Transposable Elements, Bacterial virus, “Saltoviridae”

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3970d294d1bfcdd19d9e8216788c7ccb

المؤلفون: EM Adriaenssens, M Krupovic, P Knezevic, H-W Ackermann, J Barylski, JR Brister, MRC Clokie, S Duffy, BE Dutilh, RA Edwards, F Enault, HB Jang, J Klumpp, AM Kropinski, R Lavigne, MM Poranen, D Prangishvili, J Rumnieks, MB Sullivan, J Wittmann, HM Oksanen, A Gillis, JH Kuhn

مصطلحات موضوعية: Uncategorized, Viruses, Listeria, Major Capsid Protein, Phage Protein, Virus Community, Expansive Group

Relation: 2381/43909; https://figshare.com/articles/journal_contribution/Taxonomy_of_prokaryotic_viruses_2016_update_from_the_ICTV_bacterial_and_archaeal_viruses_subcommittee_/10195406

الاتاحة: https://figshare.com/articles/journal_contribution/Taxonomy_of_prokaryotic_viruses_2016_update_from_the_ICTV_bacterial_and_archaeal_viruses_subcommittee_/10195406

المؤلفون: Hulo, Chantal, Masson, Patrick, le Mercier, Philippe, Toussaint, Ariane

المصدر: Virology, 477

مصطلحات موضوعية: Virologie médicale, Virologie générale, Caudovirales, Phage protein annotation, Phage taxonomy, “Myosaltovirinae”, “Saltoviridae”, “Siphosaltovirinae”

وصف الملف: 1 full-text file(s): application/pdf

Relation: uri/info:doi/10.1016/j.virol.2014.10.009; uri/info:pii/S0042682214004577; uri/info:pmid/25500185; uri/info:scp/84930008169; https://dipot.ulb.ac.be/dspace/bitstream/2013/205424/1/Elsevier_189051.pdf; http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/205424

الاتاحة: http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/205424
https://dipot.ulb.ac.be/dspace/bitstream/2013/205424/1/Elsevier_189051.pdf

المؤلفون: Forchheim, Michael

مصطلحات موضوعية: MRSA , Lyse , Proteinfaltung , Staphylococcus aureus , Antimikrobieller Wirkstoff , Bakteriophagen , Endolysine , Proteindesign , Endolysine , Zelllyse , topisch , systemisch , domainshuffling , antimicrobial , phage , protein, 570 Biowissenschaften, Biologie, ddc:570

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a2b2e46c945f9838983683b54d9e81bf
https://epub.uni-regensburg.de/12332/

المؤلفون: Rolf Lood (3839296), Mattias Collin (62685)

مصطلحات موضوعية: Genetics, Acne, Phage Particle, Phage Genome, Phage Protein, Putative Virulence Factor

Relation: https://figshare.com/articles/figure/Additional_file_of_Characterization_and_genome_sequencing_of_two_Propionibacterium_acnes_phages_displaying_pseudolysogeny/12876538

الاتاحة: https://doi.org/10.6084/m9.figshare.12876538.v13

المؤلفون: Bidnenko, Elena, Chopin, Marie-Christine, Ehrlich, S.Dusko, Anba, Jamila

المساهمون: MICrobiologie de l'ALImentation au Service de la Santé (MICALIS), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Unité de recherche Génétique Microbienne (UGM), Institut National de la Recherche Agronomique (INRA), Laboratoire de Génétique Microbienne, Université Joseph Fourier - Grenoble 1 (UJF), Unité de génétique microbienne

المصدر: ISSN: 0378-1097.

مصطلحات موضوعية: phage protein, Lactococcus lactis AbiD1, [SDV]Life Sciences [q-bio]

Relation: info:eu-repo/semantics/altIdentifier/pmid/12351244; PUBMED: 12351244

الاتاحة: https://hal.inrae.fr/hal-04310441
https://doi.org/10.1111/j.1574-6968.2002.tb11360.x

المؤلفون: UCL - SST/ELI/ELIM - Applied Microbiology, Adriaenssens, Evelien M, Krupovic, Mart, Knezevic, Petar, Ackermann, Hans-Wolfgang, Barylski, Jakub, Brister, J Rodney, Clokie, Martha R C, Duffy, Siobain, Dutilh, Bas E, Edwards, Robert A, Enault, Francois, Jang, Ho Bin, Klumpp, Jochen, Kropinski, Andrew M, Lavigne, Rob, Poranen, Minna M, Prangishvili, David, Rumnieks, Janis, Sullivan, Matthew B, Wittmann, Johannes, Oksanen, Hanna M, Gillis, Annika, Kuhn, Jens H

المصدر: Archives of Virology, Vol. 162, no.4, p. 1153-1157 (2017)

مصطلحات الفهرس: Viruses, Listeria, Major Capsid Protein, Phage Protein, Virus Community, Expansive Group, info:eu-repo/semantics/article

URL: http://hdl.handle.net/2078.1/204072