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1Academic Journal
المؤلفون: John Anders, Hannes Petruschke, Nico Jehmlich, Sven-Bastiaan Haange, Martin von Bergen, Peter F Stadler
المصدر: BMC Bioinformatics, Vol 22, Iss 1, Pp 1-20 (2021)
مصطلحات موضوعية: Small proteins, Metaproteogenomics, Peptide-spectrum matches, Microbial communitities, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5
وصف الملف: electronic resource
Relation: https://doaj.org/toc/1471-2105
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2Academic Journal
المصدر: JOURNAL OF PROTEOME RESEARCH ; ISSN: 1535-3893 ; ISSN: 1535-3907
مصطلحات موضوعية: Biology and Life Sciences, bioinformatics, data analysis, peptide identification, peptide-spectrum matches, proteomics
وصف الملف: application/pdf
Relation: https://biblio.ugent.be/publication/01GWKX4ABTQMSK000E4RXB11SK; http://doi.org/10.1021/acs.jproteome.2c00609; https://biblio.ugent.be/publication/01GWKX4ABTQMSK000E4RXB11SK/file/01GWKX9EAF10QAK4JFJSQ0DPYR
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3Academic Journal
المؤلفون: John Anders (10881093), Hannes Petruschke (10881096), Nico Jehmlich (425790), Sven-Bastiaan Haange (2029324), Martin von Bergen (6860861), Peter F Stadler (8196351)
مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Molecular Biology, Cancer, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, Small proteins, Metaproteogenomics, Peptide-spectrum matches, Microbial communitities
Relation: https://figshare.com/articles/journal_contribution/Additional_file_1_of_A_workflow_to_identify_novel_proteins_based_on_the_direct_mapping_of_peptide-spectrum-matches_to_genomic_locations/14684415
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4Academic Journal
المؤلفون: Abramova, Anastasiia, Korobeynikov, Anton
المساهمون: Anastasiia Abramova and Anton Korobeynikov
مصطلحات موضوعية: mass spectrometry, natural products, peptide spectrum matches, statistical significance
وصف الملف: application/pdf
Relation: Is Part Of LIPIcs, Volume 88, 17th International Workshop on Algorithms in Bioinformatics (WABI 2017); https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2017.14
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5
المؤلفون: Tomás Ruiz-Argüeso, José Manuel Palacios, David Durán, Marta Albareda, Ana-Isabel Marina, Carmen García
المساهمون: Ministerio de Ciencia, Innovación y Universidades (España)
المصدر: Molecular & Cellular Proteomics : MCP
Digital.CSIC. Repositorio Institucional del CSIC
instnameمصطلحات موضوعية: lens, pI, isoelectric point, Proteome, sHSPs, small heat-shock proteins, Biochemistry, bacteroids, Analytical Chemistry, Pisum, 03 medical and health sciences, proteomics, Symbiosis, Bacterial Proteins, Nitrogen Fixation, Molecular Biology, 030304 developmental biology, Plant Proteins, 0303 health sciences, Rhizobium leguminosarum, biology, NCR peptides, Research, ABC, ATP-binding cassette, TCA cycle, tricarboxylic acid cycle, USP, universal stress protein, 030302 biochemistry & molecular biology, IRLC, intergenic region-lacking clade, Peas, Nitrogenase, food and beverages, legume, biology.organism_classification, Plant cell, PSMs, peptide spectrum matches, PSP, periplasmic substrate–binding protein, Nitrogen fixation, Rhizobium, NCR peptide, nodule-specific cysteine-rich peptides, Lens Plant, Bacteria, iTRAQ, isobaric tags for relative and absolute quantitation
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6
المؤلفون: Lélia Delamarre, Christopher M. Rose, Craig Blanchette, Martine Darwish, Romain Bouziat, Jennie R. Lill, Samuel B. Pollock
المصدر: Molecular & Cellular Proteomics : MCP
مصطلحات موضوعية: Proteomics, TFF, tangential flow filtration, SPS, synchronous precursor selection, PTMs, post-translational modifications, Tandem mass tag, TOMAHAQ, Triggered by Offset, Multiplexed, Accurate-mass, High-resolution, and Absolute Quantification, Biochemistry, Mass Spectrometry, Analytical Chemistry, Workflow, Epitopes, Mice, MS, mass spectrometer, PSMs, peptide–spectrum matches, Routine analysis, 0303 health sciences, biology, β2M, beta-2 microglobulin, AMBIC, ammonium bicarbonate, pH 8, Chemistry, 030302 biochemistry & molecular biology, Technological Innovation and Resources, Transporter associated with antigen processing, DMP, dimethyl pimelimidate, Recombinant Proteins, major histocompatibility complex, TEA, triethanolamine, tandem mass tags (TMT), FWHM, full width at half maximum, IS-PRM, internal standard-triggered parallel reaction monitoring, FDR, false discovery rate, OG, octyl-beta-d glucopyranoside, Tumor cells, Computational biology, Major histocompatibility complex, Mass spectrometry, DSF, differential scanning fluorimetry, FAIMS, high-field asymmetric waveform ion mobility spectrometry, TFA, trifluoroacetic acid, 03 medical and health sciences, Special Issue: Immunopeptidomics, Cell Line, Tumor, MHC class I, Escherichia coli, Animals, MHC, major histocompatibility complex, mIFNγ, mouse interferon γ, TAP, transporter associated with antigen processing, Molecular Biology, 030304 developmental biology, automation, Histocompatibility Antigens Class I, CV, coefficient of variation, ERAP, endoplasmic reticulum aminopeptidases, TMT, tandem mass tag, ACN, acetonitrile, BCA, bicinchoninic acid, TBS, Tris-buffered saline, TCEP, Tris (2-carboxyethyl) phosphine, Targeted mass spectrometry, DTT, dithiothreitol, HCD, higher-energy collisional dissociation, biology.protein, IAA, iodoacetamide, Adpgk, ADP-dependent glucokinase
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7
المؤلفون: Ming, Liya, Zou, Yang, Zhao, Yiming, Zhang, Luna, He, Ningning, Chen, Zhen, Li, Shawn S.C., Li, Lei, Dhami, Li, Xing, Miyaji, Masaaki, Lajoie, Gilles, Chen, Benjamin, Li, Shawn Shun Cheng
المصدر: Paediatrics Publications
مصطلحات موضوعية: 0303 health sciences, Ms ms spectra, Computer science, Fragment (computer graphics), 030302 biochemistry & molecular biology, peptide-spectrum matches, bioinformatics, Computational biology, mass spectrometry liquid chromatography-MS/MS, Proteomics, File format, Biochemistry, Post Translational Modification Analysis, Mass spectrometric, 03 medical and health sciences, R package, Vector graphics, Batch processing, post-translational modification analysis, Molecular Biology, visualization, 030304 developmental biology
وصف الملف: application/pdf
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8
المؤلفون: Joey De Backer, Maksudbek Yusupov, Frank Sobott, Zainab Hafideddine, Dietmar Hammerschmid, Naresh Kumar, Sylvia Dewilde, Geert Van Raemdonck, Carl Mensch, Christian Johannessen, Sabine Van Doorslaer, Jamoliddin Razzokov, Annemie Bogaerts
المصدر: Redox Biology, Vol 19, Iss, Pp 1-10 (2018)
De Backer, J, Razzokov, J, Hammerschmid, D, Mensch, C, Hafideddine, Z, Kumar, N, Van Raemdonck, G, Yusupov, M, Van Doorslaer, S, Johannessen, C, Sobott, F, Bogaerts, A & Dewilde, S 2018, ' The effect of reactive oxygen and nitrogen species on the structure of cytoglobin: A potential tumor suppressor ', Redox Biology, vol. 19, pp. 1-10 . https://doi.org/10.1016/j.redox.2018.07.019
Redox Biologyمصطلحات موضوعية: 0301 basic medicine, Models, Molecular, Protein Conformation, CID, collision-induced dissociation, Clinical Biochemistry, medicine.disease_cause, 01 natural sciences, Biochemistry, chemistry.chemical_compound, Oxidative modifications, Neoplasms, CAP, Cold atmospheric plasma, Reactive oxygen and nitrogen species, IM, ion mobility, Heme, Protein secondary structure, CD, circular dichroism, lcsh:QH301-705.5, 010302 applied physics, lcsh:R5-920, Chemistry, Physics, Cytoglobin, Reactive Nitrogen Species, MD, molecular dynamics, Recombinant Proteins, PSM, peptide spectrum matches, TCEP, tris (2-carboxyethyl) phosphine, lcsh:Medicine (General), Oxidation-Reduction, Intracellular, Research Paper, CYGBSH…SH, (monomeric cytoglobin with free sulfhydryl groups on the cysteines), CYGB, human cytoglobin, Oxidative phosphorylation, CYGBS-S, (monomeric cytoglobin with intramolecular disulfide bridge forming cysteines), LC-MS/MS, liquid chromatography – tandem mass spectrometry, DTT, Dithiothreitol, RONS, reactive oxygen and nitrogen species, 03 medical and health sciences, ROS, reactive oxygen species, 0103 physical sciences, medicine, Humans, Globin, ESI, nano-electrospray ionization, Biology, Organic Chemistry, Cold atmospheric plasma, Disulfide bridges, Oxidative Stress, RR, resonance raman, 030104 developmental biology, MS, mass spectrometry, lcsh:Biology (General), Biophysics, Reactive Oxygen Species, Oxidative stress, Cysteine
وصف الملف: application/pdf; pdf
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9
المؤلفون: Parth A. Patel (11517744), Tae Jin Lee (11517747), Sai Karthik Kodeboyina (6398240), Garrett Jones (11517750), Kathryn Bollinger (5945738), Lane Ulrich (11517753), David Bogorad (11517756), Amy Estes (11517759), Wenbo Zhi (482439), Shruti Sharma (308114), Ashok Sharma (11517762)
مصطلحات موضوعية: Biochemistry, Medicine, peptide spectrum matches, human aqueous humor, heidelberg retinal tomography, specific alterations may, glaucomatous caucasian patients, low protein concentration, african american population, race revealed demographic, glaucoma incisional surgery, male poag patients, female poag patients, relative protein levels, apolipoprotein levels highlights, methods ah samples, apolipoprotein levels, specific variations, population variation, population differences, apolipoprotein family, ah ’, ah ), without poag, poag ), apoh levels, small volume, sample collection, race ), quantitative measure
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10Report
المؤلفون: Liang, Xijun, Xia, Zhonghang, Jian, Ling, Niu, Xinnan, Link, Andrew
مصطلحات موضوعية: Peptide identification, peptide spectrum matches (PSMs), classification, support vector machine
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11Report
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12
المؤلفون: Xijun Liang, Zhonghang Xia, Ling Jian, Andrew J. Link, Xinnan Niu
المصدر: BMC Genomics
مصطلحات موضوعية: Support Vector Machine, peptide spectrum matches (PSMs), PeptideProphet, Biology, 03 medical and health sciences, Search algorithm, Genetics, Humans, 030304 developmental biology, 0303 health sciences, Peptide identification, business.industry, Research, 030302 biochemistry & molecular biology, Rank (computer programming), Computational Biology, Pattern recognition, Support vector machine, Identification (information), classification, Artificial intelligence, Peptides, Decoy, business, Algorithms, Biotechnology, Cholesky decomposition, Optimal weight
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13Dissertation/ Thesis
المساهمون: Lin, Miin Sophia, Weir, Michael P.
مصطلحات موضوعية: peptide-spectrum matches, algorithms, confidence assessment, CID, mass spectrometry, Proteomics, yeast, parent protein profiling
وصف الملف: 75 pages; electronic
Relation: https://digitalcollections.wesleyan.edu/objectir-2535; https://doi.org/10.14418/wes01.2.30; https://digitalcollections.wesleyan.edu/sites/default/files/2023-03/16992-Thumbnail%20Image.png
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14
المؤلفون: Ivanov, Mark V., Levitsky, Lev I., Lobas, Anna A., Panic, Tanja, Laskay, Ünige A., Mitulovic, Goran, Schmid, Rainer, Pridatchenko, Marina L., Tsybin, Yury O., Gorshkov, Mikhail V.
مصطلحات موضوعية: proteomics, tandem mass spectrometry, peptide-spectrum matches, false discovery rate, peptide identification
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15
المؤلفون: Xinnan Niu, Fang-Xiang Wu, Hongwei Zhang, Xijun Liang, Li-Ping Pang, Andrew J. Link, Zhonghang Xia
المصدر: Proteome Science
مصطلحات موضوعية: 0106 biological sciences, Fuzzy classification, Computer science, Fuzzy silhouette, computer.software_genre, 01 natural sciences, Fuzzy logic, Biochemistry, Silhouette, 03 medical and health sciences, Search engine, Search algorithm, Cluster analysis, Molecular Biology, 030304 developmental biology, 0303 health sciences, Sequence database, Peptide identification, Research, Fuzzy support vector machine (SVM), Identification (information), ComputingMethodologies_PATTERNRECOGNITION, Peptide spectrum matches (PSMs), Data mining, computer, 010606 plant biology & botany
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16Electronic Resource
المؤلفون: Anders, J., Petruschke, Hannes, Jehmlich, Nico, Haange, Sven Bastiaan, von Bergen, Martin, Stadler, P.F.
المصدر: ISSN: 1471-2105
مصطلحات الفهرس: Small proteins, Metaproteogenomics, Peptide-spectrum matches, Microbial communitities
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