المؤلفون: Peifeng Ruan, Jamie L Todd, Hongyu Zhao, Yi Liu, Richard Vinisko, Julia F. Soellner, Ramona Schmid, Robert J. Kaner, Tracy R. Luckhardt, Megan L. Neely, Imre Noth, Mary Porteous, Rishi Raj, Zeenat Safdar, Mary E Strek, Christian Hesslinger, Scott M. Palmer, Thomas B. Leonard, Margaret L. Salisbury

المصدر: Respiratory Research, Vol 24, Iss 1, Pp 1-12 (2023)

مصطلحات موضوعية: Lung fibrosis, Cluster analysis, Biomarkers, Proteomics, RNA, Computational biology, Diseases of the respiratory system, RC705-779

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1465-993X

URL الوصول: https://doaj.org/article/54fbde245d2043679df55023d84fe8fb

المؤلفون: Yue Ren, Peifeng Ruan, Mark Segal, Mirela Dobre, Jeffrey R. Schelling, Upasana Banerjee, Tariq Shafi, Peter Ganz, Ruth F. Dubin

المصدر: PLoS ONE, Vol 18, Iss 12 (2023)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10712847/?tool=EBI; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/3dfc4e22ac264e30b96aa37c979b0728

المؤلفون: Yue Ren, Peifeng Ruan, Mark Segal, Mirela Dobre, Jeffrey R. Schelling, Upasana Banerjee, Tariq Shafi, Peter Ganz, Ruth F. Dubin

مصطلحات موضوعية: Biochemistry, Genetics, Biotechnology, Developmental Biology, Marine Biology, Cancer, Infectious Diseases, stage renal disease, evaluated 4849 aptamers, differential protein expression, currently lack markers, 82 ]), keratocan, quality control study, larger study using, like protein 1, 71 %[ 5, 38 %[ 1, dialysis , 72 ], long, 4607 unique proteins, 38 %[ 4, 5 year follow, raw aptamer data, modified aptamer assay, +somascan%22">xlink "> somascan, +patients%22">xlink "> patients, term biological variability, excellent technical variability

Relation: https://figshare.com/articles/journal_contribution/SomaScan_technical_information_/24788595

الاتاحة: https://doi.org/10.1371/journal.pone.0293945.s001
https://figshare.com/articles/journal_contribution/SomaScan_technical_information_/24788595

المؤلفون: Yue Ren, Peifeng Ruan, Mark Segal, Mirela Dobre, Jeffrey R. Schelling, Upasana Banerjee, Tariq Shafi, Peter Ganz, Ruth F. Dubin

مصطلحات موضوعية: Biochemistry, Genetics, Biotechnology, Developmental Biology, Marine Biology, Cancer, Infectious Diseases, stage renal disease, evaluated 4849 aptamers, differential protein expression, currently lack markers, 82 ]), keratocan, quality control study, larger study using, like protein 1, 71 %[ 5, 38 %[ 1, dialysis , 72 ], long, 4607 unique proteins, 38 %[ 4, 5 year follow, raw aptamer data, modified aptamer assay, +somascan%22">xlink "> somascan, +patients%22">xlink "> patients, term biological variability, excellent technical variability

Relation: https://figshare.com/articles/dataset/S2_File_-/24788598

الاتاحة: https://doi.org/10.1371/journal.pone.0293945.s002
https://figshare.com/articles/dataset/S2_File_-/24788598

المؤلفون: Yue Ren, Peifeng Ruan, Mark Segal, Mirela Dobre, Jeffrey R. Schelling, Upasana Banerjee, Tariq Shafi, Peter Ganz, Ruth F. Dubin

مصطلحات موضوعية: Biochemistry, Genetics, Biotechnology, Developmental Biology, Marine Biology, Cancer, Infectious Diseases, stage renal disease, evaluated 4849 aptamers, differential protein expression, currently lack markers, 82 ]), keratocan, quality control study, larger study using, like protein 1, 71 %[ 5, 38 %[ 1, dialysis , 72 ], long, 4607 unique proteins, 38 %[ 4, 5 year follow, raw aptamer data, modified aptamer assay, +somascan%22">xlink "> somascan, +patients%22">xlink "> patients, term biological variability, excellent technical variability

Relation: https://figshare.com/articles/figure/Technical_and_biological_variability_of_somascan_in_plasma_samples_of_patients_with_kidney_failure_/24788601

الاتاحة: https://doi.org/10.1371/journal.pone.0293945.g001
https://figshare.com/articles/figure/Technical_and_biological_variability_of_somascan_in_plasma_samples_of_patients_with_kidney_failure_/24788601

المؤلفون: Yue Ren, Peifeng Ruan, Mark Segal, Mirela Dobre, Jeffrey R. Schelling, Upasana Banerjee, Tariq Shafi, Peter Ganz, Ruth F. Dubin

مصطلحات موضوعية: Biochemistry, Genetics, Biotechnology, Developmental Biology, Marine Biology, Cancer, Infectious Diseases, stage renal disease, evaluated 4849 aptamers, differential protein expression, currently lack markers, 82 ]), keratocan, quality control study, larger study using, like protein 1, 71 %[ 5, 38 %[ 1, dialysis , 72 ], long, 4607 unique proteins, 38 %[ 4, 5 year follow, raw aptamer data, modified aptamer assay, +somascan%22">xlink "> somascan, +patients%22">xlink "> patients, term biological variability, excellent technical variability

Relation: https://figshare.com/articles/figure/Orthogonal_correlations_for_aptamer_and_traditional_assays_in_CERES_participants_/24788607

الاتاحة: https://doi.org/10.1371/journal.pone.0293945.g003
https://figshare.com/articles/figure/Orthogonal_correlations_for_aptamer_and_traditional_assays_in_CERES_participants_/24788607

المؤلفون: Yue Ren, Peifeng Ruan, Mark Segal, Mirela Dobre, Jeffrey R. Schelling, Upasana Banerjee, Tariq Shafi, Peter Ganz, Ruth F. Dubin

مصطلحات موضوعية: Biochemistry, Genetics, Biotechnology, Developmental Biology, Marine Biology, Cancer, Infectious Diseases, stage renal disease, evaluated 4849 aptamers, differential protein expression, currently lack markers, 82 ]), keratocan, quality control study, larger study using, like protein 1, 71 %[ 5, 38 %[ 1, dialysis , 72 ], long, 4607 unique proteins, 38 %[ 4, 5 year follow, raw aptamer data, modified aptamer assay, +somascan%22">xlink "> somascan, +patients%22">xlink "> patients, term biological variability, excellent technical variability

Relation: https://figshare.com/articles/dataset/Baseline_characteristics_of_40_participants_with_kidney_failure_/24788610

الاتاحة: https://doi.org/10.1371/journal.pone.0293945.t001
https://figshare.com/articles/dataset/Baseline_characteristics_of_40_participants_with_kidney_failure_/24788610

المؤلفون: Yue Ren, Peifeng Ruan, Mark Segal, Mirela Dobre, Jeffrey R. Schelling, Upasana Banerjee, Tariq Shafi, Peter Ganz, Ruth F. Dubin

مصطلحات موضوعية: Biochemistry, Genetics, Biotechnology, Developmental Biology, Marine Biology, Cancer, Infectious Diseases, stage renal disease, evaluated 4849 aptamers, differential protein expression, currently lack markers, 82 ]), keratocan, quality control study, larger study using, like protein 1, 71 %[ 5, 38 %[ 1, dialysis , 72 ], long, 4607 unique proteins, 38 %[ 4, 5 year follow, raw aptamer data, modified aptamer assay, +somascan%22">xlink "> somascan, +patients%22">xlink "> patients, term biological variability, excellent technical variability

Relation: https://figshare.com/articles/dataset/Fold_Change_FC_in_protein_levels_among_non-survivors_compared_to_survivors_in_40_CERES_participants_/24788616

الاتاحة: https://doi.org/10.1371/journal.pone.0293945.t003
https://figshare.com/articles/dataset/Fold_Change_FC_in_protein_levels_among_non-survivors_compared_to_survivors_in_40_CERES_participants_/24788616

المؤلفون: Yue Ren, Peifeng Ruan, Mark Segal, Mirela Dobre, Jeffrey R. Schelling, Upasana Banerjee, Tariq Shafi, Peter Ganz, Ruth F. Dubin

مصطلحات موضوعية: Biochemistry, Genetics, Biotechnology, Developmental Biology, Marine Biology, Cancer, Infectious Diseases, stage renal disease, evaluated 4849 aptamers, differential protein expression, currently lack markers, 82 ]), keratocan, quality control study, larger study using, like protein 1, 71 %[ 5, 38 %[ 1, dialysis , 72 ], long, 4607 unique proteins, 38 %[ 4, 5 year follow, raw aptamer data, modified aptamer assay, +somascan%22">xlink "> somascan, +patients%22">xlink "> patients, term biological variability, excellent technical variability

Relation: https://figshare.com/articles/figure/Biological_and_technical_variability_of_SomaScan_/24788604

الاتاحة: https://doi.org/10.1371/journal.pone.0293945.g002
https://figshare.com/articles/figure/Biological_and_technical_variability_of_SomaScan_/24788604

المؤلفون: Yue Ren, Peifeng Ruan, Mark Segal, Mirela Dobre, Jeffrey R. Schelling, Upasana Banerjee, Tariq Shafi, Peter Ganz, Ruth F. Dubin

مصطلحات موضوعية: Biochemistry, Genetics, Biotechnology, Developmental Biology, Marine Biology, Cancer, Infectious Diseases, stage renal disease, evaluated 4849 aptamers, differential protein expression, currently lack markers, 82 ]), keratocan, quality control study, larger study using, like protein 1, 71 %[ 5, 38 %[ 1, dialysis , 72 ], long, 4607 unique proteins, 38 %[ 4, 5 year follow, raw aptamer data, modified aptamer assay, +somascan%22">xlink "> somascan, +patients%22">xlink "> patients, term biological variability, excellent technical variability

Relation: https://figshare.com/articles/dataset/Proteins_meeting_significance_criteria_for_fold_change_in_CERES_participants_who_died_using_three_normalization_formats_/24788613

الاتاحة: https://doi.org/10.1371/journal.pone.0293945.t002
https://figshare.com/articles/dataset/Proteins_meeting_significance_criteria_for_fold_change_in_CERES_participants_who_died_using_three_normalization_formats_/24788613

المؤلفون: Peifeng Ruan, Shuang Wang, Hua Liang

المصدر: Bioinformatics. 36:4902-4909

مصطلحات موضوعية: Statistics and Probability, Computational biology, Biology, Biochemistry, 03 medical and health sciences, 0302 clinical medicine, Neoplasms, microRNA, medicine, Humans, Molecular Biology, 030304 developmental biology, Supplementary data, 0303 health sciences, Cancer, Patient survival, medicine.disease, Subtyping, Computer Science Applications, Identifier, MicroRNAs, Computational Mathematics, R package, Computational Theory and Mathematics, Method comparison, Research Design, 030220 oncology & carcinogenesis

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dbf0ce6d54b8407d178f898a197fd2dc
https://doi.org/10.1093/bioinformatics/btaa606

المؤلفون: Shuang Wang, Peifeng Ruan

المصدر: Briefings in Bioinformatics. 22

مصطلحات موضوعية: 0301 basic medicine, Candidate gene, Gene regulatory network, Disease, Computational biology, Biology, 03 medical and health sciences, 0302 clinical medicine, Neoplasms, Databases, Genetic, Gene expression, medicine, Humans, Gene Regulatory Networks, Molecular Biology, Gene, Cancer, Epistasis, Genetic, DNA, Neoplasm, DNA Methylation, medicine.disease, Gene Expression Regulation, Neoplastic, 030104 developmental biology, 030220 oncology & carcinogenesis, DNA methylation, Algorithms, Software, Biological network, Information Systems

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::db31c676fc99a08d6c5f2e12f1b9e969
https://doi.org/10.1093/bib/bbaa241

المؤلفون: Shuang Wang, Andrew E. Teschendorff, Min Qian, Ya Wang, Peifeng Ruan

المصدر: Methods in Molecular Biology ISBN: 9781071603000

مصطلحات موضوعية: 0301 basic medicine, Computational biology, Methylation, Biology, medicine.disease, 03 medical and health sciences, 030104 developmental biology, 0302 clinical medicine, Breast cancer, CpG site, 030220 oncology & carcinogenesis, DNA methylation, medicine, Epigenetics, Gene, Distance based, Genetic association

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::975287e66d32a1a18304980af5c55cc4
https://doi.org/10.1007/978-1-0716-0301-7_6

المؤلفون: Hua Liang, Peifeng Ruan, Hailin Huang, Jizi Shangguan

المصدر: Statistical Applications in Genetics and Molecular Biology. 18

مصطلحات موضوعية: Statistics and Probability, Computer science, Single-index model, Feature selection, Kaplan-Meier Estimate, High dimensional, Accelerated failure time model, 01 natural sciences, 010104 statistics & probability, 03 medical and health sciences, Genetics, Humans, Computer Simulation, 0101 mathematics, Melanoma, Molecular Biology, 030304 developmental biology, 0303 health sciences, Models, Statistical, Genomics, Prognosis, Sample (graphics), Computational Mathematics, Group selection, Feature (computer vision), Algorithm, Algorithms

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dd407f40f29abdbfe7cf4010b0e45c56
https://doi.org/10.1515/sagmb-2019-0016

المؤلفون: Ya Wang, Ronglai Shen, Peifeng Ruan, Shuang Wang

المصدر: Bioinformatics

مصطلحات موضوعية: Statistics and Probability, Computer science, Process (engineering), MEDLINE, computer.software_genre, Biochemistry, Genome, 03 medical and health sciences, 0302 clinical medicine, Similarity (network science), Neoplasms, Humans, Molecular Biology, 030304 developmental biology, 0303 health sciences, SIGNAL (programming language), Computational Biology, DNA Methylation, Original Papers, Computer Science Applications, Computational Mathematics, Computational Theory and Mathematics, 030220 oncology & carcinogenesis, DNA methylation, Noise (video), Data mining, computer

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d43972805f2bc8742cb189a9fb0268f3
https://pubmed.ncbi.nlm.nih.gov/30863842

المؤلفون: Peifeng Ruan

Relation: https://doi.org/10.5281/zenodo.1409748; https://doi.org/10.5281/zenodo.1409749; oai:zenodo.org:1409749

الاتاحة: https://doi.org/10.5281/zenodo.1409749

المؤلفون: Peifeng Ruan, Andrew E. Teschendorff, Ya Wang, Shuang Wang, Min Qian

المصدر: Nucleic Acids Research

مصطلحات موضوعية: Epigenomics, Breast Neoplasms, Genome-wide association study, Computational biology, Biology, Epigenesis, Genetic, 03 medical and health sciences, 0302 clinical medicine, Breast cancer, Genetics, medicine, Humans, Epigenetics, Early Detection of Cancer, 030304 developmental biology, Genetic association, Regulation of gene expression, 0303 health sciences, Methylation, DNA Methylation, Models, Theoretical, medicine.disease, Gene Expression Regulation, Neoplastic, CpG site, Case-Control Studies, DNA methylation, Disease Progression, Methods Online, CpG Islands, Female, 030217 neurology & neurosurgery, Genome-Wide Association Study

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0397a431e2b11f05f41e6d67ea03fd36
https://doi.org/10.1093/nar/gky882

المؤلفون: Peifeng Ruan, Jing Shen, Santella, Regina M., Shuigeng Zhou, Shuang Wang

المصدر: Nucleic Acids Research; 9/19/2016, Vol. 44 Issue 16, p1-12, 12p