المؤلفون: Juan Manuel Valverde, Geronimo Dubra, Michael Phillips, Austin Haider, Carlos Elena-Real, Aurélie Fournet, Emile Alghoul, Dhanvantri Chahar, Nuria Andrés-Sanchez, Matteo Paloni, Pau Bernadó, Guido van Mierlo, Michiel Vermeulen, Henk van den Toorn, Albert J. R. Heck, Angelos Constantinou, Alessandro Barducci, Kingshuk Ghosh, Nathalie Sibille, Puck Knipscheer, Liliana Krasinska, Daniel Fisher, Maarten Altelaar

المصدر: Nature Communications, Vol 14, Iss 1, Pp 1-23 (2023)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/e9908b9e43c84a22ae719efb78f9bc6b

المؤلفون: Paula M. Corsini, Sunjun Wang, Saima Rehman, Katherine Fenn, Amin Sagar, Slobodan Sirovica, Leanne Cleaver, Charlotte J. C. Edwards-Gayle, Giulia Mastroianni, Ben Dorgan, Lee M. Sewell, Steven Lynham, Dinu Iuga, W. Trent Franks, James Jarvis, Guy H. Carpenter, Michael. A. Curtis, Pau Bernadó, Vidya C. Darbari, James A. Garnett

المصدر: npj Biofilms and Microbiomes, Vol 8, Iss 1, Pp 1-16 (2022)

مصطلحات موضوعية: Microbial ecology, QR100-130

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2055-5008

URL الوصول: https://doaj.org/article/747f5f7c49064702a50bcc94f3a5b325

المؤلفون: Belén Chaves-Arquero, Santiago Martínez-Lumbreras, Nathalie Sibille, Sergio Camero, Pau Bernadó, M. Ángeles Jiménez, Silvia Zorrilla, José Manuel Pérez-Cañadillas

المصدر: Frontiers in Molecular Biosciences, Vol 9 (2022)

مصطلحات موضوعية: intrinsically disordered proteins (IDP), eIF4G1, Pab1, Pub1, NMR, structural ensemble, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmolb.2022.986121/full; https://doaj.org/toc/2296-889X

URL الوصول: https://doaj.org/article/7d78a4554f9246158f89bef1a4df1e84

المؤلفون: Ilinka Clerc, Amin Sagar, Alessandro Barducci, Nathalie Sibille, Pau Bernadó, Juan Cortés

المصدر: Computational and Structural Biotechnology Journal, Vol 19, Iss , Pp 3817-3828 (2021)

مصطلحات موضوعية: Intrinsically disordered proteins, Molecular interactions, Molecular dynamics simulations, Conformational sampling, Molecular recognition elements, Liquid-liquid phase separation, Biotechnology, TP248.13-248.65

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2001037021002695; https://doaj.org/toc/2001-0370

URL الوصول: https://doaj.org/article/30613164330e491497aac99f6eade2d8

المؤلفون: Pablo Mier, Carlos Elena-Real, Annika Urbanek, Pau Bernadó, Miguel A. Andrade-Navarro

المصدر: Computational and Structural Biotechnology Journal, Vol 18, Iss , Pp 306-313 (2020)

مصطلحات موضوعية: Homorepeat, polyQ, Glutamine, Sequence context, Codon usage, Biotechnology, TP248.13-248.65

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2001037019303605; https://doaj.org/toc/2001-0370

URL الوصول: https://doaj.org/article/958bef9fa3e44dd0801ad5a6e23a00a0

المؤلفون: Mariane Gonçalves-Kulik, Pablo Mier, Kristina Kastano, Juan Cortés, Pau Bernadó, Friederike Schmid, Miguel A. Andrade-Navarro

المصدر: Biomolecules, Vol 12, Iss 8, p 1098 (2022)

مصطلحات موضوعية: intrinsically disordered regions, low complexity regions, protein structure, homorepeats, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://www.mdpi.com/2218-273X/12/8/1098; https://doaj.org/toc/2218-273X

URL الوصول: https://doaj.org/article/20014d754a23449593daf21bb349a3fa

المؤلفون: Myriam Guillien, Assia Mouhand, Aurélie Fournet, Amandine Gontier, Aleix Martí Navia, Tiago N. Cordeiro, Frédéric Allemand, Aurélien Thureau, Jean-Louis Banères, Pau Bernadó, Nathalie Sibille

المصدر: Biomolecules, Vol 12, Iss 5, p 617 (2022)

مصطلحات موضوعية: GPCR, arrestin, intrinsically disordered proteins or regions (IDPs/IDRs), NMR, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://www.mdpi.com/2218-273X/12/5/617; https://doaj.org/toc/2218-273X

URL الوصول: https://doaj.org/article/1595edf4faf3410b84a10f7e944cbad6

المؤلفون: Guillermo Iruela, Alejandro Fernández, Amin Sagar, Francisco Javier Carvajal, Pau Bernadó, Miquel Pons

المصدر: Biosensors, Vol 12, Iss 2, p 96 (2022)

مصطلحات موضوعية: intrinsically disordered proteins (IDP), fuzzy complexes, high-throughput screening, c-Src, fluorescence, NMR, Biotechnology, TP248.13-248.65

وصف الملف: electronic resource

Relation: https://www.mdpi.com/2079-6374/12/2/96; https://doaj.org/toc/2079-6374

URL الوصول: https://doaj.org/article/fff2060aa07744fdb6aca0e04964b81c

المؤلفون: Anna Morató, Carlos A. Elena-Real, Matija Popovic, Aurélie Fournet, Karen Zhang, Frédéric Allemand, Nathalie Sibille, Annika Urbanek, Pau Bernadó

المصدر: Biomolecules, Vol 10, Iss 10, p 1458 (2020)

مصطلحات موضوعية: huntingtin protein, low-complexity regions, nuclear magnetic resonance (NMR), cell-free protein expression, isotopic labeling, site-specific isotopic labeling, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://www.mdpi.com/2218-273X/10/10/1458; https://doaj.org/toc/2218-273X

URL الوصول: https://doaj.org/article/d28061e9c75f424491a7f60eaa910fd2

المؤلفون: Alejandro Estaña, Malik Ghallab, Pau Bernadó, Juan Cortés

المصدر: Molecules, Vol 24, Iss 6, p 1150 (2019)

مصطلحات موضوعية: proteins, structural elements, conformational transitions, structural database, heuristic search algorithms, Organic chemistry, QD241-441

وصف الملف: electronic resource

Relation: https://www.mdpi.com/1420-3049/24/6/1150; https://doaj.org/toc/1420-3049

URL الوصول: https://doaj.org/article/98c603f308304d67b943e512d2468350

المؤلفون: Alain Ibáñez de Opakua, Nekane Merino, Maider Villate, Tiago N Cordeiro, Georgina Ormaza, Marta Sánchez-Carbayo, Tammo Diercks, Pau Bernadó, Francisco J Blanco

المصدر: PLoS ONE, Vol 12, Iss 2, p e0172507 (2017)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC5313212?pdf=render; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/94dd12eec9e64ff4b013fee69ad74490

المؤلفون: Rebeca García-Fandiño, Pau Bernadó, Sara Ayuso-Tejedor, Javier Sancho, Modesto Orozco

المصدر: PLoS Computational Biology, Vol 8, Iss 8, p e1002647 (2012)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/22927805/pdf/?tool=EBI; https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

URL الوصول: https://doaj.org/article/98e2b5b6f34847b29722140132b82605

المؤلفون: Tiago N Cordeiro, Holger Schmidt, Cristina Madrid, Antonio Juárez, Pau Bernadó, Christian Griesinger, Jesús García, Miquel Pons

المصدر: PLoS Pathogens, Vol 7, Iss 11, p e1002380 (2011)

مصطلحات موضوعية: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/22114557/?tool=EBI; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

URL الوصول: https://doaj.org/article/9365c281407946809a074e0fe918ae66

المؤلفون: Carlos A. Elena-Real, Amin Sagar, Annika Urbanek, Matija Popovic, Anna Morató, Alejandro Estaña, Aurélie Fournet, Christine Doucet, Xamuel L. Lund, Zhen-Dan Shi, Luca Costa, Aurélien Thureau, Frédéric Allemand, Rolf E. Swenson, Pierre-Emmanuel Milhiet, Ramon Crehuet, Alessandro Barducci, Juan Cortés, Davy Sinnaeve, Nathalie Sibille, Pau Bernadó

المساهمون: Centre de Biologie Structurale [Montpellier] (CBS), Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Équipe Robotique et InteractionS (LAAS-RIS), Laboratoire d'analyse et d'architecture des systèmes (LAAS), Université Toulouse Capitole (UT Capitole), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Université Toulouse - Jean Jaurès (UT2J), Université de Toulouse (UT)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université Toulouse Capitole (UT Capitole), Université de Toulouse (UT), Institut Laue-Langevin (ILL), National Institutes of Health [Bethesda] (NIH), Beamline SWING, Synchrotron SOLEIL, Synchrotron SOLEIL (SSOLEIL), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Institute for Advanced Chemistry of Catalonia (IQAC-CSIC), Institute for Advanced Chemistry of Catalonia, Biologie Structurale Intégrative (ERL 9002 - BSI ), Institut Pasteur de Lille, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Lille-Centre National de la Recherche Scientifique (CNRS), Facteurs de Risque et Déterminants Moléculaires des Maladies liées au Vieillissement - U 1167 (RID-AGE), Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Lille-Centre Hospitalier Régional Universitaire [Lille] (CHRU Lille), ANR-10-LABX-0012,EpiGenMed,From Genome and Epigenome to Molecular Medicine: turning new paradigms in biology into the therapeutic strategies of tomorrow(2010), ANR-17-CE11-0022,GPCteR,Mécanismes moléculaires des régions C-terminales désordonnées et fonctionnelles des RCPG et impact sur les voies de la signalisation cellulaire dépendantes de l'arrestine(2017), ANR-19-P3IA-0004,ANITI,Artificial and Natural Intelligence Toulouse Institute(2019), European Project: 648030,H2020,ERC-2014-CoG,chemREPEAT(2015), European Commission

المصدر: Nature Structural and Molecular Biology
Nature Structural and Molecular Biology, 2023, 30 (3), pp.309-320. ⟨10.1038/s41594-023-00920-0⟩

مصطلحات موضوعية: Huntington’s disease is a neurodegenerative disorder, poly-Q-related diseases, Pathogenic huntingtin, Structural Biology, [SDV]Life Sciences [q-bio], Proteins, Protein aggregation, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], HTT gene, Solution-state NMR, Molecular Biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::475f235bff342f0029f2acbf593fe718
https://doi.org/10.1038/s41594-023-00920-0

المؤلفون: Amin Sagar (473006), Cy M. Jeffries (9173851), Maxim V. Petoukhov (429835), Dmitri I. Svergun (25365), Pau Bernadó (2339062)

مصطلحات موضوعية: Biophysics, Biochemistry, Molecular Biology, Biotechnology, Inorganic Chemistry, Plant Biology, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, Information Systems not elsewhere classified, EOM, SAXS data, one-bead-per-residue coarse-grained., approach, Derive Intrinsically Disordered Pro., protein, form factors, Ensemble Optimization Method

Relation: https://figshare.com/articles/journal_contribution/Comment_on_the_Optimal_Parameters_to_Derive_Intrinsically_Disordered_Protein_Conformational_Ensembles_from_Small-Angle_X_ray_Scattering_Data_Using_the_Ensemble_Optimization_Method/14226545

الاتاحة: https://doi.org/10.1021/acs.jctc.1c00014.s001

المؤلفون: Nikola Arsic, Tania Slatter, Gilles Gadea, Etienne Villain, Aurelie Fournet, Marina Kazantseva, Frédéric Allemand, Nathalie Sibille, Martial Seveno, Sylvain de Rossi, Sunali Mehta, Serge Urbach, Jean-Christophe Bourdon, Pau Bernado, Andrey V. Kajava, Antony Braithwaite, Pierre Roux

المصدر: Nature Communications, Vol 12, Iss 1, Pp 1-18 (2021)

مصطلحات موضوعية: Science

Relation: https://doi.org/10.1038/s41467-021-25550-2; https://doaj.org/toc/2041-1723; https://doaj.org/article/68225466d9dc4ec1bb5844837f0a0ec8

الاتاحة: https://doi.org/10.1038/s41467-021-25550-2
https://doaj.org/article/68225466d9dc4ec1bb5844837f0a0ec8

المؤلفون: Aleix Tarrés-Solé, Federica Battistini, Joachim M Gerhold, Olivier Piétrement, Belén Martínez-García, Elena Ruiz-López, Sébastien Lyonnais, Pau Bernadó, Joaquim Roca, Modesto Orozco, Eric Le Cam, Juhan Sedman, Maria Solà

المصدر: Nucleic Acids Research.

مصطلحات موضوعية: Genetics

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::0d46d4f652aa6761f2e20702aceb586a
https://doi.org/10.1093/nar/gkad397

المؤلفون: Javier González-Delgado, Amin Sagar, Christophe Zanon, Kresten Lindorff-Larsen, Pau Bernadó, Pierre Neuvial, Juan Cortés

المساهمون: Institut de Mathématiques de Toulouse UMR5219 (IMT), Université Toulouse Capitole (UT Capitole), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Université Toulouse - Jean Jaurès (UT2J), Université de Toulouse (UT)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS), Équipe Robotique et InteractionS (LAAS-RIS), Laboratoire d'analyse et d'architecture des systèmes (LAAS), Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université Toulouse Capitole (UT Capitole), Université de Toulouse (UT), Centre de Biologie Structurale [Montpellier] (CBS), Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Service Informatique : Développement, Exploitation et Assistance (LAAS-IDEA), Linderstrøm-Lang Centre for Protein Science [Copenhagen], IT University of Copenhagen (ITU), ANR-19-P3IA-0004,ANITI,Artificial and Natural Intelligence Toulouse Institute(2019), ANR-11-LABX-0040,CIMI,Centre International de Mathématiques et d'Informatique (de Toulouse)(2011), ANR-10-LABX-0012,EpiGenMed,From Genome and Epigenome to Molecular Medicine: turning new paradigms in biology into the therapeutic strategies of tomorrow(2010), ANR-10-INBS-0005,FRISBI,Infrastructure Française pour la Biologie Structurale Intégrée(2010), European Project: 648030,H2020,ERC-2014-CoG,chemREPEAT(2015)

المصدر: Journal of Molecular Biology
Journal of Molecular Biology, 2023, pp.168053. ⟨10.1016/j.jmb.2023.168053⟩
González-Delgado, J, Sagar, A, Zanon, C, Lindorff-Larsen, K, Bernadó, P, Neuvial, P & Cortés, J 2023, ' WASCO : A Wasserstein-based Statistical Tool to Compare Conformational Ensembles of Intrinsically Disordered Proteins ', Journal of Molecular Biology, vol. 435, no. 14, 168053 . https://doi.org/10.1016/j.jmb.2023.168053

مصطلحات موضوعية: Wasserstein distance matrices, [SDV.BBM.BP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biophysics, [STAT]Statistics [stat], SAXS/NMR ensemble refinement, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM], Structural Biology, conformational ensembles, intrinsically disordered proteins, molecular dynamics simulations, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], Molecular Biology

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::044b1771ebe20c4002edcfd195858491
https://doi.org/10.1101/2022.12.01.518687

المؤلفون: Javier González-Delgado, Pablo Mier, Pau Bernadó, Pierre Neuvial, Juan Cortés

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::a87909fe4bffb721fe65659ca9c924f7
https://doi.org/10.1101/2022.11.29.518303

المؤلفون: Carlos A. Elena-Real, Amin Sagar, Annika Urbanek, Matija Popovic, Anna Morató, Alejandro Estaña, Aurélie Fournet, Xamuel L. Lund, Zhen-Dan Shi, Luca Costa, Aurélien Thureau, Frédéric Allemand, Rolf E. Swenson, Pierre-Emmanuel Milhiet, Alessandro Barducci, Juan Cortés, Davy Sinnaeve, Nathalie Sibille, Pau Bernadó

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::23483e7c4329f6acf67ec4472ca5d101
https://doi.org/10.1101/2022.10.25.513661