المؤلفون: Shin, Jongoh, Zielinski, Daniel C, Palsson, Bernhard O

مصطلحات موضوعية: Biochemistry and Cell Biology, Biological Sciences, Genetics, Biotechnology, Generic health relevance, Environmental Sciences, Information and Computing Sciences, Developmental Biology, Biological sciences, Chemical sciences, Environmental sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/9wb0m6px
https://escholarship.org/content/qt9wb0m6px/qt9wb0m6px.pdf

المؤلفون: Shin, Jongoh, Zielinski, Daniel C, Palsson, Bernhard O

مصطلحات موضوعية: Microbiology, Biological Sciences, Nutrition, Genetics, Biotechnology, Independent component analysis, Machine learning, Nutritional response, Systems biology, Vibrio natriegens, iModulon, Industrial Biotechnology, Biochemistry and cell biology, Industrial biotechnology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2dk1m8vq
https://escholarship.org/content/qt2dk1m8vq/qt2dk1m8vq.pdf

المؤلفون: Shin, Jongoh, Rychel, Kevin, Palsson, Bernhard O

المصدر: Cell Reports. 42(6)

مصطلحات موضوعية: Biochemistry and Cell Biology, Genetics, Biological Sciences, Human Genome, 1.1 Normal biological development and functioning, Underpinning research, Transcriptome, Systems Biology, Data Science, Vibrio, Bacterial Proteins, CP: Genomics, CP: Microbiology, ICA, Vibrio natriegens, iModulon, independent component analysis, machine learning, natural competence, regulon discovery, systems biology, transcriptional regulation, Machine learning, Independent component analysis (, ICA), Vibrio natrigens, Regulon discovery, Medical Physiology, Biological sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/5gr5m43x
https://escholarship.org/content/qt5gr5m43x/qt5gr5m43x.pdf

المؤلفون: Bremer, Erhard, Calteau, Alexandra, Danchin, Antoine, Harwood, Colin, Helmann, John D, Médigue, Claudine, Palsson, Bernhard O, Sekowska, Agnieszka, Vallenet, David, Zuniga, Abril, Zuniga, Cristal

المصدر: Microbial Biotechnology. 16(6)

مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Genetics, Human Genome, Generic health relevance, Bacillus subtilis, Genomics, Genome, Bacterial, Microbiology, Industrial biotechnology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/82k2w37x

المؤلفون: Chowdhury, Sourav, Zielinski, Daniel C, Dalldorf, Christopher, Rodrigues, Joao V, Palsson, Bernhard O, Shakhnovich, Eugene I

المصدر: Nature communications. 14(1)

مصطلحات موضوعية: Tetrahydrofolate Dehydrogenase, Proteins, Anti-Bacterial Agents, Metabolomics, Power, Psychological, 2.1 Biological and endogenous factors, 5.1 Pharmaceuticals, Development of treatments and therapeutic interventions, Aetiology, Generic health relevance, Good Health and Well Being

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/08p2q20n
https://escholarship.org/content/qt08p2q20n/qt08p2q20n.pdf

المؤلفون: Akbari, Amir, Palsson, Bernhard O

المصدر: Proceedings of the National Academy of Sciences of the United States of America. 120(19)

مصطلحات موضوعية: Citric Acid Cycle, Metabolic Networks and Pathways, Carbon Cycle, Homeostasis, Carbon, origin of metabolism, carbon-fixing cycles, alkaline hydrothermal vents, metabolic homeostasis, emergent properties

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/4bq6257f

المؤلفون: Gao, Ye, Bang, Ina, Seif, Yara, Kim, Donghyuk, Palsson, Bernhard O

المصدر: Nucleic Acids Research. 51(8)

مصطلحات موضوعية: Genetics, Escherichia coli, Gene Expression Regulation, Bacterial, Iron, Regulon, Repressor Proteins, Escherichia coli Proteins, Transcription Factors, Environmental Sciences, Biological Sciences, Information and Computing Sciences, Developmental Biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/440753tw
https://escholarship.org/content/qt440753tw/qt440753tw.pdf

المؤلفون: Catoiu, Edward Alexander, Phaneuf, Patrick, Monk, Jonathan, Palsson, Bernhard O

المصدر: Proceedings of the National Academy of Sciences of the United States of America. 120(15)

مصطلحات موضوعية: Genetics, Human Genome, Biotechnology, Genetic Variation, Mutation, Escherichia coli, Genome, Bacterial, Amino Acid Sequence, alignment, allele, laboratory evolution, mutation, sequence

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/5jw6q1x4

المؤلفون: Kavvas, Erol S, Long, Christopher P, Sastry, Anand, Poudel, Saugat, Antoniewicz, Maciek R, Ding, Yang, Mohamed, Elsayed T, Szubin, Richard, Monk, Jonathan M, Feist, Adam M, Palsson, Bernhard O

المصدر: mSystems. 7(6)

مصطلحات موضوعية: Biotechnology, Human Genome, Genetics, 2.1 Biological and endogenous factors, Aetiology, Escherichia coli, NADP, Adaptation, Physiological, Genotype, Mutation, transcriptional regulatory network, adaptive evolution, metabolism, regulatory network, systems biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/1m54x08s
https://escholarship.org/content/qt1m54x08s/qt1m54x08s.pdf

المؤلفون: Yuan, Yuan, Seif, Yara, Rychel, Kevin, Yoo, Reo, Chauhan, Siddharth, Poudel, Saugat, Al-bulushi, Tahani, Palsson, Bernhard O, Sastry, Anand V

المصدر: mSystems. 7(6)

مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Biomedical and Clinical Sciences, Genetics, Microbiology, Clinical Sciences, Vaccine Related, Infectious Diseases, Digestive Diseases, Emerging Infectious Diseases, Human Genome, Prevention, Biotechnology, Biodefense, Foodborne Illness, 2.2 Factors relating to the physical environment, Aetiology, Infection, Humans, Salmonella enterica, Serogroup, Salmonella typhimurium, Gene Expression Regulation, Gene Expression Profiling, Salmonella, ICA, pan-genomics, pan-genome, Salmonella Typhimurium, systems biology, transcriptomics, gene regulation

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/9v79q5k1
https://escholarship.org/content/qt9v79q5k1/qt9v79q5k1.pdf

المؤلفون: Hyun, Jason C, Monk, Jonathan M, Palsson, Bernhard O

المصدر: BMC Genomics. 23(1)

مصطلحات موضوعية: Infectious Diseases, Human Genome, Genetics, Biotechnology, Aetiology, 2.2 Factors relating to the physical environment, Phylogeny, Pangenome, Core genome, Comparative genomics, Multispecies, Heaps' law, Functional diversity, Sequence diversity, Protein domains, Aminoacyl-tRNA synthetases, Heaps’ law, Biological Sciences, Information and Computing Sciences, Medical and Health Sciences, Bioinformatics

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2386m8dz
https://escholarship.org/content/qt2386m8dz/qt2386m8dz.pdf

المؤلفون: Rajput, Akanksha, Tsunemoto, Hannah, Sastry, Anand V, Szubin, Richard, Rychel, Kevin, Chauhan, Siddharth M, Pogliano, Joe, Palsson, Bernhard O

المصدر: Nucleic Acids Research. 50(17)

مصطلحات موضوعية: Lung, Antimicrobial Resistance, Rare Diseases, Infectious Diseases, Cystic Fibrosis, Genetics, 2.2 Factors relating to the physical environment, Development of treatments and therapeutic interventions, 5.1 Pharmaceuticals, Aetiology, 2.1 Biological and endogenous factors, Infection, Anti-Bacterial Agents, Bacterial Proteins, Biofilms, Gene Expression Profiling, Humans, Pseudomonas Infections, Pseudomonas aeruginosa, beta-Lactams, Environmental Sciences, Biological Sciences, Information and Computing Sciences, Developmental Biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2w18g2f4
https://escholarship.org/content/qt2w18g2f4/qt2w18g2f4.pdf

المؤلفون: Akbari, Amir, Palsson, Bernhard O

المصدر: PLoS computational biology. 18(8)

مصطلحات موضوعية: Minerals, Ion Channels, Biological Evolution, Artificial Cells, Mathematical Sciences, Biological Sciences, Information and Computing Sciences, Bioinformatics

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/0503v6tz
https://escholarship.org/content/qt0503v6tz/qt0503v6tz.pdf

المؤلفون: Fait, Anaëlle, Seif, Yara, Mikkelsen, Kasper, Poudel, Saugat, Wells, Jerry M, Palsson, Bernhard O, Ingmer, Hanne

المصدر: Proceedings of the National Academy of Sciences of the United States of America. 119(30)

مصطلحات موضوعية: Infectious Diseases, Antimicrobial Resistance, Emerging Infectious Diseases, Genetics, Biotechnology, Aetiology, 2.2 Factors relating to the physical environment, Infection, Anti-Bacterial Agents, Evolution, Molecular, Humans, Methicillin-Resistant Staphylococcus aureus, Microbial Sensitivity Tests, Oxacillin, Staphylococcal Infections, Staphylococcus aureus, Vancomycin, Vancomycin Resistance, Virulence, antibiotic resistance, adaptive laboratory evolution, transcriptional regulation, virulence

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/87v837h1

المؤلفون: Norsigian, Charles J, Danhof, Heather A, Brand, Colleen K, Midani, Firas S, Broddrick, Jared T, Savidge, Tor C, Britton, Robert A, Palsson, Bernhard O, Spinler, Jennifer K, Monk, Jonathan M

المصدر: Proceedings of the National Academy of Sciences of the United States of America. 119(18)

مصطلحات موضوعية: Genetics, Infectious Diseases, Human Genome, Infection, Clostridioides, Clostridioides difficile, Cross Infection, Genetic Variation, Humans, Systems Biology, systems biology, pangenomics, strain typing, metabolic profile

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/00m9m9zj
https://escholarship.org/content/qt00m9m9zj/qt00m9m9zj.pdf

المؤلفون: Rajput, Akanksha, Tsunemoto, Hannah, Sastry, Anand V, Szubin, Richard, Rychel, Kevin, Sugie, Joseph, Pogliano, Joe, Palsson, Bernhard O

المصدر: Nucleic Acids Research. 50(7)

مصطلحات موضوعية: Genetics, Rare Diseases, Lung, Biotechnology, Cystic Fibrosis, Aetiology, 2.2 Factors relating to the physical environment, Bacterial Proteins, Escherichia coli, Gene Expression Regulation, Bacterial, Machine Learning, Pseudomonas aeruginosa, Transcription Factors, Transcriptome, Environmental Sciences, Biological Sciences, Information and Computing Sciences, Developmental Biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/700389mn
https://escholarship.org/content/qt700389mn/qt700389mn.pdf

المؤلفون: Hidalgo, David, Martínez-Ortiz, César A, Palsson, Bernhard O, Jiménez, José I, Utrilla, José

المصدر: iScience. 25(3)

مصطلحات موضوعية: Microbiology, Biological Sciences, Genetics, Bacteriology, Bacterium, Cell biology, ribosomes, rRNA, Resource Allocation, fitness, RNA polymerase

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/3dp0k50b
https://escholarship.org/content/qt3dp0k50b/qt3dp0k50b.pdf

المؤلفون: Palsson, Bernhard O, Yurkovich, James T

المصدر: Molecular Systems Biology. 18(2)

مصطلحات موضوعية: Biochemistry and Cell Biology, Biological Sciences, Computer Simulation, Kinetics, Models, Biological, Other Biological Sciences, Bioinformatics, Biochemistry and cell biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2091t2p9
https://escholarship.org/content/qt2091t2p9/qt2091t2p9.pdf

المؤلفون: Decker, Katherine T, Gao, Ye, Rychel, Kevin, Bulushi, Tahani Al, Chauhan, Siddharth M, Kim, Donghyuk, Cho, Byung-Kwan, Palsson, Bernhard O

المصدر: Nucleic Acids Research. 50(D1)

مصطلحات موضوعية: Biotechnology, Genetics, Human Genome, 1.1 Normal biological development and functioning, Underpinning research, Generic health relevance, Binding Sites, Chromatin, Chromatin Immunoprecipitation, Databases, Genetic, Genome, Prokaryotic Cells, Protein Binding, Transcription Factors, Environmental Sciences, Biological Sciences, Information and Computing Sciences, Developmental Biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/9bw9q0q4
https://escholarship.org/content/qt9bw9q0q4/qt9bw9q0q4.pdf

المؤلفون: Hwang, Soonkyu, Lee, Namil, Choe, Donghui, Lee, Yongjae, Kim, Woori, Kim, Ji Hun, Kim, Gahyeon, Kim, Hyeseong, Ahn, Neung-Ho, Lee, Byoung-Hee, Palsson, Bernhard O, Cho, Byung-Kwan

مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Genetics, Underpinning research, 1.1 Normal biological development and functioning, Generic health relevance, Streptomyces, differential gene expression, regulatory elements, sigma factor, transcription factor, transcript 3 '-end positions, transcript 3′-end positions, Other Biological Sciences, Biomedical Engineering, Medical Biotechnology, Industrial biotechnology, Medical biotechnology, Biomedical engineering

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/98z0q8d9