المؤلفون: Kyung Hyun Lee, Shervin Assassi, Chandra Mohan, Claudia Pedroza

المصدر: BMC Genomics, Vol 25, Iss 1, Pp 1-10 (2024)

مصطلحات موضوعية: Machine learning, Proteomics data, Performance metrics, Small sample sizes, Biotechnology, TP248.13-248.65, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1471-2164

URL الوصول: https://doaj.org/article/48f4ba0c5eee4a879611cc1b57ef34d4

المؤلفون: Javier Robles, Ananth Prakash, Juan Antonio Vizcaíno, J. Ignacio Casal

مصطلحات موضوعية: Biochemistry, Genetics, Immunology, Cancer, Science Policy, Virology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, two main objectives, concept study demonstrates, patient classification according, survival annotation data, public data repositories, potential clinical value, cancer biomarker field, div >< p, protein expression data, validation , protein expression, u ><, silico <, colorectal cancer, biomarker discovery, proteomics data, protein level, crc classification, vastly underused, useful resource, treatment response

Relation: https://figshare.com/articles/journal_contribution/List_of_the_proteins_identified_as_new_potential_biomarkers_/25043172

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011828.s002
https://figshare.com/articles/journal_contribution/List_of_the_proteins_identified_as_new_potential_biomarkers_/25043172

المؤلفون: Javier Robles, Ananth Prakash, Juan Antonio Vizcaíno, J. Ignacio Casal

مصطلحات موضوعية: Biochemistry, Genetics, Immunology, Cancer, Science Policy, Virology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, two main objectives, concept study demonstrates, patient classification according, survival annotation data, public data repositories, potential clinical value, cancer biomarker field, div >< p, protein expression data, validation , protein expression, u ><, silico <, colorectal cancer, biomarker discovery, proteomics data, protein level, crc classification, vastly underused, useful resource, treatment response

Relation: https://figshare.com/articles/journal_contribution/List_of_the_proteins_corresponding_to_the_SEC6_signature_/25043169

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011828.s001
https://figshare.com/articles/journal_contribution/List_of_the_proteins_corresponding_to_the_SEC6_signature_/25043169

المؤلفون: Aileen Bahl, Celine Ibrahim, Kristina Plate, Andrea Haase, Jörn Dengjel, Penny Nymark, Verónica I. Dumit

المصدر: Journal of Cheminformatics, Vol 15, Iss 1, Pp 1-17 (2023)

مصطلحات موضوعية: Proteomics, Harmonized proteomics data analysis, Meta-analysis, Mode-of-action (MoA), Adverse outcome pathways (AOP), Nanomaterials, Information technology, T58.5-58.64, Chemistry, QD1-999

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1758-2946

URL الوصول: https://doaj.org/article/edab0f66a8a0400898a23df3eb128876

المؤلفون: Wang, Hong, Dai, Chengxin, Pfeuffer, Julianus, Sachsenberg, Timo, Sanchez, Aniel, Bai, Mingze, Perez-Riverol, Yasset

المصدر: Proteomics. 23(20)

مصطلحات موضوعية: absolute protein expression, big data, LFQ, proteomics data reanalysis, public data, TMT, Naturvetenskap, Biologi, Biokemi och molekylärbiologi, Natural Sciences, Biological Sciences, Biochemistry and Molecular Biology

URL الوصول: https://lup.lub.lu.se/record/b3d079e4-68a2-4662-b708-6d4cebf2aa74
http://dx.doi.org/10.1002/pmic.202300188

المؤلفون: Xueyan Zhao, Wanli Jia, Jiying Wang, Shouwei Wang, Qiankun Zheng, Tizhong Shan

مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Immunology, Developmental Biology, Inorganic Chemistry, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, widely consumed source, muscle samples obtained, animal protein worldwide, sequencing data obtained, identify candidate genes, longissimus dorsi <, regulate imf deposition, 28 duroc pigs, proteomics data pork, proteomics data, pork plays, genes associated, tusc5 <, pparg <, fasn <, fabp4 <, cebpa <, relevant dap, potential role, oil red

Relation: https://figshare.com/articles/journal_contribution/Identification_of_a_Candidate_Gene_Regulating_Intramuscular_Fat_Content_in_Pigs_through_the_Integrative_Analysis_of_Transcriptomics_and_Proteomics_Data/24599882

الاتاحة: https://doi.org/10.1021/acs.jafc.3c05806.s001
https://figshare.com/articles/journal_contribution/Identification_of_a_Candidate_Gene_Regulating_Intramuscular_Fat_Content_in_Pigs_through_the_Integrative_Analysis_of_Transcriptomics_and_Proteomics_Data/24599882

المؤلفون: Doncheva, Nadezhda T, Morris, John H, Gorodkin, Jan, Jensen, Lars J

المصدر: Journal of Proteome Research. 18(2)

مصطلحات موضوعية: Networking and Information Technology R&D (NITRD), Bioengineering, 1.5 Resources and infrastructure (underpinning), Underpinning research, Generic health relevance, Computational Biology, Data Analysis, Internet, Protein Interaction Maps, Proteomics, Software, User-Computer Interface, protein networks, STRING database, Cytoscape, network analysis, network visualization, proteomics data, functional enrichment, Chemical Sciences, Biological Sciences, Biochemistry & Molecular Biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/0r73p14n

المؤلفون: Debrie, Elke, Malfait, Milan, Gabriels, Ralf, Declercq, Arthur, Sticker, Adriaan, Martens, Lennart, Clement, Lieven

المصدر: JOURNAL OF PROTEOME RESEARCH ; ISSN: 1535-3893 ; ISSN: 1535-3907

مصطلحات موضوعية: Biology and Life Sciences, Medicine and Health Sciences, Bioconductor, TDA assumptions, diagnostic plots, false discovery rate, mass spectrometry, peptide identification, peptide-to-spectrum match, proteomics data analysis, quality control, target decoy approach

وصف الملف: application/pdf

Relation: https://biblio.ugent.be/publication/01GWKVTXFYCFEXNVXFRNZPE6RD; http://doi.org/10.1021/acs.jproteome.2c00423; https://biblio.ugent.be/publication/01GWKVTXFYCFEXNVXFRNZPE6RD/file/01HKM5Y91R767KV7YNFRHZ09W0

الاتاحة: https://biblio.ugent.be/publication/01GWKVTXFYCFEXNVXFRNZPE6RD
http://hdl.handle.net/1854/LU-01GWKVTXFYCFEXNVXFRNZPE6RD
https://doi.org/10.1021/acs.jproteome.2c00423
https://biblio.ugent.be/publication/01GWKVTXFYCFEXNVXFRNZPE6RD/file/01HKM5Y91R767KV7YNFRHZ09W0

المؤلفون: Zheng, Yi

مصطلحات موضوعية: Statistics, Bioinformatics, Computer science, Multi-Modal Data Integration, Multi-Modal Variational Autoencoder, Single-cell data integration, Single-cell proteomics data alignment

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/7fs394pm

المؤلفون: Ivo Fierro-Monti, James C. Wright, Jyoti S. Choudhary, Juan Antonio Vizcaíno

المصدر: Frontiers in Molecular Biosciences, Vol 9 (2022)

مصطلحات موضوعية: proteogenomics, amino acid variants, protein variants, omics data analysis, RNA editing, proteomics data, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmolb.2022.1062031/full; https://doaj.org/toc/2296-889X

URL الوصول: https://doaj.org/article/865c5b529daa44ed99732d4eb47b78a0

المؤلفون: Nhung Pham, Finterly Hu, Chris T. Evelo, Martina Kutmon

المصدر: Frontiers in Immunology, Vol 13 (2022)

مصطلحات موضوعية: SARS-CoV-2, tissue-specific proteomics data, pathway activity, WikiPathways, COVID-19, Immunologic diseases. Allergy, RC581-607

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2022.963357/full; https://doaj.org/toc/1664-3224

URL الوصول: https://doaj.org/article/fc7aff5e6c1c43d683e0e629f87c5ef6

المؤلفون: Shiva Pirhadi, Keivan Maghooli, Niloofar Yousefi Moteghaed, Masoud Garshasbi, Seyed Jalaleddin Mousavirad

المصدر: Journal of Medical Signals and Sensors, Vol 11, Iss 2, Pp 108-119 (2021)

مصطلحات موضوعية: biomarker discovery, imperialist competitive algorithm, mass spectrometry high-throughput proteomics data, ovarian cancer, Medical technology, R855-855.5

وصف الملف: electronic resource

Relation: http://www.jmssjournal.net/article.asp?issn=2228-7477;year=2021;volume=11;issue=2;spage=108;epage=119;aulast=Pirhadi; https://doaj.org/toc/2228-7477

URL الوصول: https://doaj.org/article/397f4bbe559e43628fa267b4e630bf97

المؤلفون: Ananth Prakash (198483), David García-Seisdedos (14308083), Shengbo Wang (12890250), Deepti Jaiswal Kundu (12890256), Andrew Collins (63814), Nancy George (11407085), Pablo Moreno (410344), Irene Papatheodorou (112283), Andrew R. Jones (2217223), Juan Antonio Vizcaíno (1538299)

مصطلحات موضوعية: Biochemistry, Genetics, Molecular Biology, Immunology, Developmental Biology, Infectious Diseases, Biological Sciences not elsewhere classified, visualized either individually, structural region within, resource expression atlas, performed gene ontology, baseline protein expression, compared protein abundances, protein abundance results, healthy human individuals, make proteomics data, human tissues, also compared, 489 individuals, data provides, data generated, proteomics datasets, unprecedented large, recent years, public domain, proteins across, pride database, life scientists, key point, increased dramatically

Relation: https://figshare.com/articles/journal_contribution/Integrated_View_of_Baseline_Protein_Expression_in_Human_Tissues/21788460

الاتاحة: https://doi.org/10.1021/acs.jproteome.2c00406.s001

المؤلفون: Joseph Bloom (7535444), Aaron Triantafyllidis (11563535), Anna Quaglieri (9718088), Paula Burton Ngov (11563538), Giuseppe Infusini (829811), Andrew Webb (464690)

مصطلحات موضوعية: Inorganic Chemistry, Plant Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, wide dynamic range, verify experiment integrity, relative protein abundance, https :// app, available globally via, protein expression quantification, mass dynamics 1, shotgun proteomics data, easily publish results, proteomics data analysis, free data label, based analysis environment, free quantification, based environment, md 1, integrating label, based architecture, subsequent representation, streamlining collaboration, robust method, emulating perseus, com, benchmark datasets, automatically process, also annotate

Relation: https://figshare.com/articles/journal_contribution/Mass_Dynamics_1_0_A_Streamlined_Web-Based_Environment_for_Analyzing_Sharing_and_Integrating_Label-Free_Data/16810508

الاتاحة: https://doi.org/10.1021/acs.jproteome.1c00683.s001

المؤلفون: Janine Egert (10036126), Eva Brombacher (10907304), Bettina Warscheid (359980), Clemens Kreutz (315828)

مصطلحات موضوعية: Biochemistry, Science Policy, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, proteomics data sets, PRIDE, imputation algorithm, Imputation Algorithm Imputation, RMSE, MATLAB, performance, DIMA, github.com, proteomics data analysis pipelines, MV

Relation: https://figshare.com/articles/journal_contribution/DIMA_Data-Driven_Selection_of_an_Imputation_Algorithm/14714541

الاتاحة: https://doi.org/10.1021/acs.jproteome.1c00119.s001

المؤلفون: Hao Zhang, Ruisi Xu, Meng Ding, Ying Zhang

المصدر: Frontiers in Cell and Developmental Biology, Vol 9 (2021)

مصطلحات موضوعية: gastric cancer, protein, proteomics data, graph convolutional network, Xgboost, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcell.2021.739715/full; https://doaj.org/toc/2296-634X

URL الوصول: https://doaj.org/article/6e0b70caa3b4452c868e656d2302736d

المؤلفون: George Minadakis, Kleitos Sokratous, George M. Spyrou

المصدر: Computational and Structural Biotechnology Journal, Vol 18, Iss , Pp 1695-1703 (2020)

مصطلحات موضوعية: Differential protein expression analysis, Differential gene expression analysis, Protein co-expression networks, Gene co-expression networks, Proteomics data post-processing, Transcriptomic data post-processing, Biotechnology, TP248.13-248.65

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2001037020303251; https://doaj.org/toc/2001-0370

URL الوصول: https://doaj.org/article/90b1299aaef0478b8c9270e25b79b301

المؤلفون: Van Den Bossche, Tim, Kunath, Benoit J., Schallert, Kay, Schäpe, Stephanie S., Abraham, Paul E., Armengaud, Jean, Arntzen, Magnus Ø., Bassignani, Ariane, Benndorf, Dirk, Fuchs, Stephan, Giannone, Richard J., Griffin, Timothy J., Hagen, Live H., Halder, Rashi, Henry, Céline, Hettich, Robert L., Heyer, Robert, Jagtap, Pratik, Jehmlich, Nico, Jensen, Marlene, Juste, Catherine, Kleiner, Manuel, Langella, Olivier, Lehmann, Theresa, Leith, Emma, May, Patrick, Mesuere, Bart, Miotello, Guylaine, Peters, Samantha L., Pible, Olivier, Queiros, Pedro T., Reichl, Udo, Renard, Bernhard Y., Schiebenhoefer, Henning, Sczyrba, Alexander, Tanca, Alessandro, Trappe, Kathrin, Trezzi, Jean-Pierre, Uzzau, Sergio, Verschaffelt, Pieter, von Bergen, Martin, Wilmes, Paul, Wolf, Maximilian, Martens, Lennart, Muth, Thilo

المصدر: NATURE COMMUNICATIONS ; ISSN: 2041-1723

مصطلحات موضوعية: Biology and Life Sciences, metaproteomics, proteomics, microbiome, MULTIPLE SEARCH ENGINES, PROTEIN INFERENCE, MICROBIAL COMMUNITIES, EXTRACTION METHODS, SEQUENCE DATABASE, MASS-SPECTROMETRY, PROTEOMICS DATA, IDENTIFICATION, PEPTIDE, GENOMES

وصف الملف: application/pdf

Relation: https://biblio.ugent.be/publication/8730913; https://biblio.ugent.be/publication/8730913/file/8730916

الاتاحة: https://biblio.ugent.be/publication/8730913
http://hdl.handle.net/1854/LU-8730913
https://doi.org/10.1038/s41467-021-27542-8
https://biblio.ugent.be/publication/8730913/file/8730916

المؤلفون: William E. Fondrie (8457924), Wout Bittremieux (1609138), William S. Noble (453112)

مصطلحات موضوعية: Biochemistry, Genetics, Cancer, Inorganic Chemistry, Science Policy, Space Science, Information Systems not elsewhere classified, ppx package, Proteomics Data Repositories, command line tool, Python package, PRIDE, MIT, access, mass spectrometry data, modification search tool ANN-SoLo

Relation: https://figshare.com/articles/journal_contribution/ppx_Programmatic_Access_to_Proteomics_Data_Repositories/15097853

الاتاحة: https://doi.org/10.1021/acs.jproteome.1c00454.s001

المؤلفون: Hareram Birla (11662576), Chetan Keswani (565996), Saumitra Sen Singh (7406945), Walia Zahra (11662579), Hagera Dilnashin (11662582), Aaina Singh Rathore (11178059), Richa Singh (470456), Monika Rajput (2900840), Priyanka Keshri (11662585), Surya Pratap Singh (7406948)

مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Neuroscience, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, treat neurodegenerative diseases, target genes correlating, parkinsonian mouse model, new therapeutic targets, exert therapeutic effects, clinical use due, check motor functions, associated proinflammatory cytokines, multiple side effects, control vs pd, tc via inhibition, report 800 deps, regulating multiple pathways, intoxicated parkinsonian mice, proteomics approach stress, neuroprotective molecular mechanism, proteomics approach, molecular pathways, multiple drugs, pd pathways, proteomics data

Relation: https://figshare.com/articles/journal_contribution/Unraveling_the_Neuroprotective_Effect_of_Tinospora_cordifolia_in_a_Parkinsonian_Mouse_Model_through_the_Proteomics_Approach/16955551

الاتاحة: https://doi.org/10.1021/acschemneuro.1c00481.s001