المؤلفون: Loucera, Carlos, Perez-Florido, Javier, Casimiro-Soriguer, Carlos S., Ortuno, Francisco M., Carmona, Rosario, Bostelmann, Gerrit, Rodríguez-Baño, Jesús, Romero Gómez, Manuel, Lepe Jiménez, José Antonio, Dopazo, Joaquin

المساهمون: Universidad de Sevilla. Departamento de Medicina, Universidad de Sevilla. Departamento de Microbiología, Ministerio de Ciencia e Innovación (MICIN). España, Junta de Andalucía, Instituto de Salud Carlos III, European Commission (EC). Fondo Europeo de Desarrollo Regional (FEDER)

مصطلحات موضوعية: SARS-CoV-2, COVID-19, Survival, Virus genome, Phylogeny

Relation: Viruses, 14 (9), 1893.; PID2020- 117979RB-I00; COVID-0012-2020 and PS-2020-342; https://www.mdpi.com/1999-4915/14/9/1893; https://idus.us.es/handle//11441/147992

الاتاحة: https://idus.us.es/handle//11441/147992

المؤلفون: Pérez-Florido, Javier, Casimiro-Soriguer, Carlos S., Ortuño, Francisco M., Fernández-Rueda, José L., Aguado, Andrea, Lara, María, Riazzo, Cristina, Rodríguez-Iglesias, Manuel, Camacho‐Martínez, Pedro, Merino Díaz, Laura, Pupo Ledo, María Inmaculada, Salazar, Adolfo de, Viñuela, Laura, García-Fuentes, Ana, Chueca, Natalia, Andalusian Covid-Sequencing Initiative, García, Federico, Dopazo, Joaquín, Lepe, José A.

المساهمون: Ministerio de Ciencia e Innovación (España), European Commission, Instituto de Salud Carlos III, Junta de Andalucía

مصطلحات موضوعية: Surveillance, SARS-CoV-2, Co-infection, Epidemiology, Recombination

Relation: #PLACEHOLDER_PARENT_METADATA_VALUE#; info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/PID2020-117979RB-I00/ES/MEDICINA INTERCEPTIVA, DESCUBRIMIENTO DE DIANAS Y REUTILIZACION DE FARMACOS MEDIANTE MODELOS MECANISTICOS Y APRENDIZAJE SUPERVISADO/; Publisher's version; The underlying dataset has been published as supplementary material of the article in the publisher platform at DOI 10.3390/ijms24032419; https://doi.org/10.3390/ijms24032419; Sí; International Journal of Molecular Sciences 24(3): 2419 (2023); http://hdl.handle.net/10261/334143; http://dx.doi.org/10.13039/501100000780; http://dx.doi.org/10.13039/501100004587; http://dx.doi.org/10.13039/501100011011; http://dx.doi.org/10.13039/501100004837; 2-s2.0-85147894252; https://api.elsevier.com/content/abstract/scopus_id/85147894252

الاتاحة: http://hdl.handle.net/10261/334143
https://doi.org/10.3390/ijms24032419
https://doi.org/10.13039/501100000780
https://doi.org/10.13039/501100004587
https://doi.org/10.13039/501100011011
https://doi.org/10.13039/501100004837
https://api.elsevier.com/content/abstract/scopus_id/85147894252

المؤلفون: Carrillo-Perez, Francisco, Ortuno, Francisco M., Börjesson, Alejandro, Rojas, Ignacio, Herrera, Luis Javier

المساهمون: Ministerio de Ciencia e Innovación, Junta de Andalucía

المصدر: Cancer Imaging ; volume 23, issue 1 ; ISSN 1470-7330

الاتاحة: http://dx.doi.org/10.1186/s40644-023-00586-3
https://link.springer.com/content/pdf/10.1186/s40644-023-00586-3.pdf
https://link.springer.com/article/10.1186/s40644-023-00586-3/fulltext.html

المؤلفون: Carrillo-Perez, Francisco, Ortuno, Francisco M., Börjesson, Alejandro, Rojas, Ignacio, Herrera, Luis Javier

المصدر: Cancer Imaging ; volume 23, issue 1 ; ISSN 1470-7330

الاتاحة: https://doi.org/10.1186/s40644-023-00636-w
https://link.springer.com/content/pdf/10.1186/s40644-023-00636-w.pdf
https://link.springer.com/article/10.1186/s40644-023-00636-w/fulltext.html

المؤلفون: Peña-Chilet, María, Roldán, Gema, Perez-Florido, Javier, Ortuño, Francisco M., Carmona, Rosario, Antiñolo Gil, Guillermo, Dopazo, Joaquín

المساهمون: Universidad de Sevilla. Departamento de Cirugía

Relation: NUCLEIC ACIDS RESEARCH, 49 (D1), 1130-1137.; https://academic.oup.com/nar/article/49/D1/D1130/5912819#google_vignette; https://idus.us.es/handle//11441/136900

الاتاحة: https://idus.us.es/handle//11441/136900

المؤلفون: Loucera, Carlos, Ortuño, Francisco M., Martínez González, Luis Javier, Navarro Marí, José María, De Salazar, Adolfo, Viñuela, Laura, Lepe, José Antonio, García García, Federico, Andalusian COVID-19 Sequencing Initiative

مصطلحات موضوعية: SARS-CoV-2, COVID-19, Survival, Virus genome, Phylogeny

Relation: Loucera, C. [et al.]. Assessing the Impact of SARS-CoV-2 Lineages and Mutations on Patient Survival. Viruses 2022, 14, 1893. [https://doi.org/10.3390/v14091893]; https://hdl.handle.net/10481/77372

الاتاحة: https://hdl.handle.net/10481/77372
https://doi.org/10.3390/v14091893

المؤلفون: Ortuño, Francisco M.

Thesis Advisors: Rojas Ruiz, Ignacio, Universidad de Granada. Departamento de Arquitectura y Tecnología de Computadores

مصطلحات موضوعية: Bioinformática, Cadenas de aminoácidos, Secuencias, Análisis de información, Sistemas expertos

Time: 681.3, 1203.04

URL الوصول: http://hdl.handle.net/10481/34483

المؤلفون: Ortuño, Francisco M.

Thesis Advisors: Rojas Ruiz, Ignacio, Universidad de Granada. Departamento de Arquitectura y Tecnología de Computadores

مصطلحات موضوعية: Bioinformática, Cadenas de aminoácidos, Secuencias, Análisis de información, Sistemas expertos

Time: 681.3, 1203.04

URL الوصول: http://hdl.handle.net/10481/34483

المؤلفون: Mavillard, Fabiola, Perez-Florido, Javier, Ortuño, Francisco M., Valladares, Amador, Álvarez-Villegas, Miren L., Roldán, Gema, Carmona, Rosario, Soriano, Manuel, Susarte, Santiago, Fuentes, Pilar, López-López, Daniel, Nuñez-Negrillo, Ana María, Carvajal, Alejandra, Morgado, Yolanda, Arteaga, Daniel, Ufano, Rosa, Mir, Pablo, Gamella, Juan F., Dopazo, Joaquín, Paradas, Carmen, Cabrera-Serrano, Macarena

المساهمون: Instituto de Salud Carlos III, Gobierno de España Ministerio de Ciencia e Innovación, Junta de Andalucia Consejeria de Salud

المصدر: Journal of Genetics and Genomics ; ISSN 1673-8527

الاتاحة: http://dx.doi.org/10.1016/j.jgg.2024.03.006
https://api.elsevier.com/content/article/PII:S1673852724000596?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S1673852724000596?httpAccept=text/plain

المؤلفون: Peña-Chilet, María, Roldán Gema, Perez-Florido, Javier, Ortuño, Francisco M., Carmona, Rosario, Aquino, Virginia, Lopez-Lopez, Daniel, Loucera, Carlos, Fernandez-Rueda, Jose L., Gallego, Asunción, García-García, Francisco, González-Neira, Anna, Pita, Guillermo, Núñez-Torres, Rocío, Santoyo-López, Javier, Ayuso, Carmen, Minguez, Pablo, Avila-Fernandez, Almudena, Corton, Marta, Moreno-Pelayo, Miguel Ángel, Morin, Matías, Gallego-Martinez, Alvaro, Lopez-Escamez, Jose A., Borrego, Salud, Antiñolo, Guillermo, Amigo, Jorge, Salgado-Garrido, Josefa, Pasalodos-Sanchez, Sara, Morte, Beatriz, The Spanish Exome Crowdsourcing Consortium, Carracedo Álvarez, Ángel, Alonso, Ángel, Dopazo, Joaquín, Grinberg Vaisman, Daniel Raúl

المصدر: Articles publicats en revistes (Genètica, Microbiologia i Estadística)

مصطلحات موضوعية: Bases de dades, Població, Espanya, Genètica de poblacions humanes, Databases, Population, Spain, Human population genetics

وصف الملف: 1 p.; application/pdf

Relation: Reproducció del document publicat a: https://doi.org/10.1093/nar/gkaa794; Nucleic Acids Research, 2021, vol. 49, num. D1, p. D1130-D1137; https://doi.org/10.1093/nar/gkaa794; http://hdl.handle.net/2445/195162; 704141

الاتاحة: http://hdl.handle.net/2445/195162

المؤلفون: Garrido-Rodriguez, Martín, Lopez-Lopez, Daniel, Ortuno, Francisco M., Peña-Chilet, María, Muñoz, Eduardo, Calzado, Marco A., Dopazo, Joaquin

المساهمون: Garrido-Rodriguez,M, Lopez-Lopez,D, Ortuno,FM, Peña-Chilet,M, Dopazo,J Clinical Bioinformatics Area, Fundación Progreso y Salud (FPS), Hospital Virgen del Rocío, Sevilla, Spain. Garrido-Rodriguez,M, Calzado,MA Departamento de Biología Celular, Fisiología e Inmunología, Universidad de Córdoba, Córdoba, Spain. Garrido-Rodriguez,M, Muñoz,E, Calzado,MA Instituto Maimónides de Investigación Biomédica de Córdoba (IMIBIC), Córdoba, Spain. Garrido-Rodriguez,M, Calzado.MA Hospital Universitario Reina Sofía, Córdoba, Spain. Lopez-Lopez.D: Ortuno,FM, Dopazo,J Computational Systems Medicine, Institute of Biomedicine of Seville (IBIS), Sevilla, Spain. Peña-Chilet,M, Dopazo,J Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), FPS, Hospital Virgen del Rocío, Sevilla, Spain. Dopazo,J FPS/ELIXIR-es, Hospital Virgen del Rocío, Sevilla, Spain, JD has received these grants: SAF2017- 88908-R from the Ministerio de Economı´a y Competitividad and PT17/0009/0006 from the Instituto de Salud Carlos III, as well as an FP7 People Marie-Curie Actions 813533 and and Horizon 2020 Framework Programme 676559. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

مصطلحات موضوعية: Transcriptome, RNA massive sequencing, RNA-seq, Workflow, Signaling pathways, Transcriptoma, Flujo de trabajo, Secuenciación de escopeta completa del transcriptoma, Medical Subject Headings::Phenomena and Processes::Mathematical Concepts::Algorithms, Medical Subject Headings::Anatomy::Cells::Cells, Cultured::Cell Line::Cell Line, Tumor, Medical Subject Headings::Disciplines and Occupations::Natural Science Disciplines::Biological Science Disciplines::Biology::Computational Biology, Medical Subject Headings::Information Science::Information Science::Information Storage and Retrieval::Databases as Topic::Databases, Factual, Medical Subject Headings::Analytical, Diagnostic and Therapeutic Techniques and Equipment::Investigative Techniques::Genetic Techniques::Gene Expression Profiling, Diagnostic and Therapeutic Techniques and Equipment::Investigative Techniques::Genetic Techniques::Sequence Analysis::High-Throughput Nucleotide Sequencing, Medical Subject Headings::Organisms::Eukaryota::Animals::Chordata::Vertebrates::Mammals::Primates::Haplorhini::Catarrhini::Hominidae::Humans, Diagnostic and Therapeutic Techniques and Equipment::Investigative Techniques::Models, Theoretical, Medical Subject Headings::Phenomena and Processes::Genetic Phenomena::Genetic Variation::Mutation, Medical Subject Headings::Information Science::Information Science::Computing Methodologies::Software, Medical Subject Headings::Phenomena and Processes::Chemical Phenomena::Biochemical Phenomena::Biochemical Processes::Transcription, Genetic::Transcriptome, Medical Subject Headings::Information Science::Information Science::Systems Analysis::Workflow, Medical Subject Headings::Disciplines and Occupations::Natural Science Disciplines::Biological Science Disciplines::Biology::Genetics::Genomics, Medical Subject Headings::Phenomena and Processes::Chemical Phenomena::Biochemical Phenomena::Biochemical Processes::Signal Transduction

وصف الملف: application/pdf; application/vnd.openxmlformats-officedocument.spreadsheetml.sheet

Relation: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008748; Garrido-Rodriguez M, Lopez-Lopez D, Ortuno FM, Peña-Chilet M, Muñoz E, Calzado MA, et al. A versatile workflow to integrate RNA-seq genomic and transcriptomic data into mechanistic models of signaling pathways. PLoS Comput Biol. 2021 Feb 11;17(2):e1008748; http://hdl.handle.net/10668/4220; PMC7904194

الاتاحة: http://hdl.handle.net/10668/4220
https://doi.org/10.1371/journal.pcbi.1008748

المؤلفون: Ortuño, Francisco M., Loucera, Carlos, Casimiro-Soriguer, Carlos S., Lepe, José A., Camacho‐Martínez, Pedro, Merino Díaz, Laura, Salazar, Adolfo de, Chueca, Natalia, García, Federico, Pérez-Florido, Javier, Dopazo, Joaquín

المساهمون: Ministerio de Economía y Competitividad (España), Junta de Andalucía, European Commission

Relation: Publisher's version; https://doi.org/10.1093/gigascience/giab078; Sí; e-issn: 2047-217X; GigaScience 10(12): giab078 (2021); http://hdl.handle.net/10261/269507; http://dx.doi.org/10.13039/501100000780; http://dx.doi.org/10.13039/501100011011; http://dx.doi.org/10.13039/501100003329

الاتاحة: http://hdl.handle.net/10261/269507
https://doi.org/10.1093/gigascience/giab078
https://doi.org/10.13039/501100000780
https://doi.org/10.13039/501100011011
https://doi.org/10.13039/501100003329

المؤلفون: Almorox, Lucía, Antequera, Laura, Rojas, Ignacio, Herrera, Luis Javier, Ortuño, Francisco M.

المصدر: Genes; Mar2024, Vol. 15 Issue 3, p312, 19p

مصطلحات موضوعية: CERVICAL cancer, GENE expression, UTERINE cancer, SQUAMOUS cell carcinoma, DIAGNOSIS methods

المؤلفون: Galvez, Juan M., Castillo-Secilla, Daniel, Herrera, Luis J., Valenzuela, Olga, Caba, Octavio, Prados, Jose C., Ortuno, Francisco M., Rojas, Ignacio

المساهمون: Government of Andalusia, Government of Spain, Feder Andalusia Operational Program Framework

المصدر: IEEE Journal of Biomedical and Health Informatics ; volume 24, issue 7, page 2119-2130 ; ISSN 2168-2194 2168-2208

الاتاحة: http://dx.doi.org/10.1109/jbhi.2019.2953978
http://xplorestaging.ieee.org/ielx7/6221020/9130988/08939388.pdf?arnumber=8939388

المؤلفون: Ministerio de Ciencia e Innovación (España), European Commission, Instituto de Salud Carlos III, Junta de Andalucía, Pérez-Florido, Javier, Casimiro-Soriguer, Carlos S., Ortuño, Francisco M., Fernández-Rueda, José L., Aguado, Andrea, Lara, María, Riazzo, Cristina, Rodríguez-Iglesias, Manuel, Camacho‐Martínez, Pedro, Merino Díaz, Laura, Pupo Ledo, María Inmaculada, Salazar, Adolfo de, Viñuela, Laura, García-Fuentes, Ana, Chueca, Natalia, Andalusian Covid-Sequencing Initiative, García, Federico, Dopazo, Joaquín, Lepe, José A.

مصطلحات الفهرس: Surveillance, SARS-CoV-2, Co-infection, Epidemiology, Recombination, artículo

URL: http://hdl.handle.net/10261/334143
https://api.elsevier.com/content/abstract/scopus_id/85147894252
https://doi.org/10.3390/ijms24032419
Publisher's version
The underlying dataset has been published as supplementary material of the article in the publisher platform at DOI 10.3390/ijms24032419
https://doi.org/10.3390/ijms24032419
Sí
info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/PID2020-117979RB-I00/ES/MEDICINA INTERCEPTIVA, DESCUBRIMIENTO DE DIANAS Y REUTILIZACION DE FARMACOS MEDIANTE MODELOS MECANISTICOS Y APRENDIZAJE SUPERVISADO

المؤلفون: National Institutes of Health (US), Fondation Bertarelli, Remondi Family Foundation, Stojkovic, Miodrag, Ortuño, Francisco M., Han, Dongjun, Stojkovic, Petra, Dopazo, Joaquín, Stankovic, Konstantina M.

مصطلحات الفهرس: Pollution, Nanoplastics, Human induced pluripotent stem cells, RNA sequencing, DNA methylation, Human diseases, artículo

URL: http://hdl.handle.net/10261/352326
https://doi.org/10.1016/j.envpol.2022.120849
The underlying dataset has been published as supplementary material of the article in the publisher platform at https://doi.org/10.1016/j.envpol.2022.120849
https://doi.org/10.1016/j.envpol.2022.120849
Sí

المؤلفون: Galvez, Juan M, Castillo-Secilla, Daniel, Herrera, Luis J, Valenzuela, Olga, Caba, Octavio, Prados, Jose C, Ortuno, Francisco M, Rojas, Ignacio

مصطلحات موضوعية: Biomarkers, Tumor, Computational Biology, Diagnosis, Computer-Assisted, Gene Expression Profiling, Humans, Machine Learning, RNA-Seq, Skin Neoplasms

Relation: http://hdl.handle.net/10668/14873; https://ieeexplore.ieee.org/ielx7/6221020/9130988/08939388.pdf

الاتاحة: http://hdl.handle.net/10668/14873
https://doi.org/10.1109/JBHI.2019.2953978
https://ieeexplore.ieee.org/ielx7/6221020/9130988/08939388.pdf

المؤلفون: Stojkovic, Miodrag, Ortuño, Francisco M., Han, Dongjun, Stojkovic, Petra, Dopazo, Joaquín, Stankovic, Konstantina M.

المساهمون: National Institutes of Health (US), Fondation Bertarelli, Remondi Family Foundation

مصطلحات موضوعية: Pollution, Nanoplastics, Human induced pluripotent stem cells, RNA sequencing, DNA methylation, Human diseases

Relation: The underlying dataset has been published as supplementary material of the article in the publisher platform at https://doi.org/10.1016/j.envpol.2022.120849; https://doi.org/10.1016/j.envpol.2022.120849; Sí; Environmental Pollution 320: 120849 (2023); http://hdl.handle.net/10261/352326

الاتاحة: http://hdl.handle.net/10261/352326
https://doi.org/10.1016/j.envpol.2022.120849

المؤلفون: Irigoyen Medina, Antonio, Jiménez Luna, Cristina, Benavides, Manuel, Caba Pérez, Octavio, Gallego, Javier, Ortuño, Francisco M., Guillen-Ponce, Carmen, Rojas Ruiz, Ignacio, Aranda, Enrique, Torres, Carolina, Prados Salazar, José Carlos

Relation: Irigoyen A, Jimenez-Luna C, Benavides M, Caba O, Gallego J, Ortuño FM, et al. (2018) Integrative multi-platform meta-analysis of gene expression profiles in pancreatic ductal adenocarcinoma patients for identifying novel diagnostic biomarkers. PLoS ONE 13(4): e0194844. [http://hdl.handle.net/10481/51463]; http://hdl.handle.net/10481/51463

الاتاحة: http://hdl.handle.net/10481/51463
https://doi.org/10.1371/journal.pone.0194844

المؤلفون: Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Instituto de Salud Carlos III, European Commission, Junta de Andalucía, Loucera, Carlos [0000-0001-9598-6965], Carmona, Rosario [0000-0002-4235-2886], Bostelmann, Gerrit [0000-0002-1690-6347], Martínez-González, Luis Javier [0000-0003-2202-0662], Rodríguez-Baño, Jesús [0000-0001-6732-9001], Romero-Gómez, Manuel [0000-0001-8494-8947], García-León, Francisco Javier [0000-0003-3460-8818], Navarro-Marí, José María [0000-0002-5227-5167], Salazar, Adolfo de [0000-0002-4318-858X], Viñuela, Laura [0000-0003-1157-4299], Lepe, José A. [0000-0002-3635-4930], García, Federico [0000-0001-7611-781X], Dopazo, Joaquín [0000-0003-3318-120X], Loucera, Carlos, Pérez-Florido, Javier, Casimiro-Soriguer, Carlos S., Ortuño, Francisco M., Carmona, Rosario, Bostelmann, Gerrit, Martínez-González, Luis Javier, Muñoyerro-Muñiz, Dolores, Villegas-Portero, Román, Rodríguez-Baño, Jesús, Romero-Gómez, Manuel, Lorusso, Nicola, García-León, Francisco Javier, Navarro-Marí, José María, Camacho‐Martínez, Pedro, Merino Díaz, Laura, Salazar, Adolfo de, Viñuela, Laura, The Andalusian COVID-19 Sequencing Initiative, Lepe, José A., García, Federico, Dopazo, Joaquín

مصطلحات الفهرس: SARS-CoV-2, COVID-19, Survival, Virus genome, Phylogeny, artículo

URL: http://hdl.handle.net/10261/280741
https://doi.org/10.3390/v14091893
Publisher's version
The underlying dataset has been published as supplementary material of the article in the publisher platform at DOI 10.3390/v14091893
https://doi.org/10.3390/v14091893
Sí
info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/PID2020-117979RB-I00/ES/MEDICINA INTERCEPTIVA, DESCUBRIMIENTO DE DIANAS Y REUTILIZACION DE FARMACOS MEDIANTE MODELOS MECANISTICOS Y APRENDIZAJE SUPERVISADO
info:eu-repo/grantAgreement/EC/H2020/871075